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Korten T, Tavkin E, Scharrel L, Kushwaha VS, Diez S. An automated in vitro motility assay for high-throughput studies of molecular motors. LAB ON A CHIP 2018; 18:3196-3206. [PMID: 30204813 PMCID: PMC6180315 DOI: 10.1039/c8lc00547h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2018] [Accepted: 07/31/2018] [Indexed: 05/05/2023]
Abstract
Molecular motors, essential to force-generation and cargo transport within cells, are invaluable tools for powering nanobiotechnological lab-on-a-chip devices. These devices are based on in vitro motility assays that reconstitute molecular transport with purified motor proteins, requiring a deep understanding of the biophysical properties of motor proteins and thorough optimization to enable motility under varying environmental conditions. Until now, these assays have been prepared manually, severely limiting throughput. To overcome this limitation, we developed an in vitro motility assay where sample preparation, imaging and data evaluation are fully automated, enabling the processing of a 384-well plate within less than three hours. We demonstrate the automated assay for the analysis of peptide inhibitors for kinesin-1 at a wide range of concentrations, revealing that the IAK domain responsible for kinesin-1 auto-inhibition is both necessary and sufficient to decrease the affinity of the motor protein for microtubules, an aspect that was hidden in previous experiments due to scarcity of data.
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Affiliation(s)
- Till Korten
- B CUBE - Center for Molecular Bioengineering
, Technische Universität Dresden
,
01069 Dresden
, Germany
.
- Max Planck Institute of Molecular Cell Biology and Genetics
,
01307 Dresden
, Germany
| | - Elena Tavkin
- B CUBE - Center for Molecular Bioengineering
, Technische Universität Dresden
,
01069 Dresden
, Germany
.
- Max Planck Institute of Molecular Cell Biology and Genetics
,
01307 Dresden
, Germany
| | - Lara Scharrel
- B CUBE - Center for Molecular Bioengineering
, Technische Universität Dresden
,
01069 Dresden
, Germany
.
- Max Planck Institute of Molecular Cell Biology and Genetics
,
01307 Dresden
, Germany
| | - Vandana Singh Kushwaha
- B CUBE - Center for Molecular Bioengineering
, Technische Universität Dresden
,
01069 Dresden
, Germany
.
- Max Planck Institute of Molecular Cell Biology and Genetics
,
01307 Dresden
, Germany
| | - Stefan Diez
- B CUBE - Center for Molecular Bioengineering
, Technische Universität Dresden
,
01069 Dresden
, Germany
.
- Max Planck Institute of Molecular Cell Biology and Genetics
,
01307 Dresden
, Germany
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2
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Böhm KJ. Toxic effects of zinc ions on kinesin - Potential molecular cause of impaired intracellular transport. Toxicol Lett 2017; 268:58-62. [PMID: 28122263 DOI: 10.1016/j.toxlet.2017.01.013] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2016] [Revised: 01/18/2017] [Accepted: 01/19/2017] [Indexed: 01/09/2023]
Abstract
In healthy organisms the metabolism of the trace element zinc is well balanced. If this balance becomes destroyed the free zinc level might increase and cause toxic effects. The present study demonstrates that under definite conditions zinc ions are able to inhibit the ATPase activity of neuron-specific KIF5A (kinesin-1). Correspondingly, the motility activity of KIF5A also decreased. The inhibition rates have been found to depend on the magnesium ion concentration. Lowering the magnesium concentration weakens the inhibition. In addition, also decreases of temperature or increasing the ATP concentration result in reduced inhibition. Zinc ion-mediated inhibition of KIF5A activity might be one molecular cause contributing to impaired transport processes within brain and other organs in cases of zinc dyshomeostasis.
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Affiliation(s)
- Konrad J Böhm
- Leibniz Institute on Aging - Fritz Lipmann Institute, Beutenbergstraße 11, D-07745 Jena, Germany.
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3
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The Ca2+ sensor protein swiprosin-1/EFhd2 is present in neurites and involved in kinesin-mediated transport in neurons. PLoS One 2014; 9:e103976. [PMID: 25133820 PMCID: PMC4136728 DOI: 10.1371/journal.pone.0103976] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Accepted: 07/08/2014] [Indexed: 01/10/2023] Open
Abstract
Swiprosin-1/EFhd2 (EFhd2) is a cytoskeletal Ca2+ sensor protein strongly expressed in the brain. It has been shown to interact with mutant tau, which can promote neurodegeneration, but nothing is known about the physiological function of EFhd2 in the nervous system. To elucidate this question, we analyzed EFhd2−/−/lacZ reporter mice and showed that lacZ was strongly expressed in the cortex, the dentate gyrus, the CA1 and CA2 regions of the hippocampus, the thalamus, and the olfactory bulb. Immunohistochemistry and western blotting confirmed this pattern and revealed expression of EFhd2 during neuronal maturation. In cortical neurons, EFhd2 was detected in neurites marked by MAP2 and co-localized with pre- and post-synaptic markers. Approximately one third of EFhd2 associated with a biochemically isolated synaptosome preparation. There, EFhd2 was mostly confined to the cytosolic and plasma membrane fractions. Both synaptic endocytosis and exocytosis in primary hippocampal EFhd2−/− neurons were unaltered but transport of synaptophysin-GFP containing vesicles was enhanced in EFhd2−/− primary hippocampal neurons, and notably, EFhd2 inhibited kinesin mediated microtubule gliding. Therefore, we found that EFhd2 is a neuronal protein that interferes with kinesin-mediated transport.
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Nicholas MP, Rao L, Gennerich A. An improved optical tweezers assay for measuring the force generation of single kinesin molecules. Methods Mol Biol 2014; 1136:171-246. [PMID: 24633799 PMCID: PMC4254714 DOI: 10.1007/978-1-4939-0329-0_10] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Numerous microtubule-associated molecular motors, including several kinesins and cytoplasmic dynein, produce opposing forces that regulate spindle and chromosome positioning during mitosis. The motility and force generation of these motors are therefore critical to normal cell division, and dysfunction of these processes may contribute to human disease. Optical tweezers provide a powerful method for studying the nanometer motility and piconewton force generation of single motor proteins in vitro. Using kinesin-1 as a prototype, we present a set of step-by-step, optimized protocols for expressing a kinesin construct (K560-GFP) in Escherichia coli, purifying it, and studying its force generation in an optical tweezers microscope. We also provide detailed instructions on proper alignment and calibration of an optical trapping microscope. These methods provide a foundation for a variety of similar experiments.
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Affiliation(s)
- Matthew P Nicholas
- Department of Anatomy and Structural Biology, Gruss Lipper Biophotonics Center, Albert Einstein College of Medicine, 1300 Morris Park Avenue, Bronx, NY, 10461, USA
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Prots I, Veber V, Brey S, Campioni S, Buder K, Riek R, Böhm KJ, Winner B. α-Synuclein oligomers impair neuronal microtubule-kinesin interplay. J Biol Chem 2013; 288:21742-54. [PMID: 23744071 DOI: 10.1074/jbc.m113.451815] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Early α-synuclein (α-Syn)-induced alterations are neurite pathologies resulting in Lewy neurites. α-Syn oligomers are a toxic species in synucleinopathies and are suspected to cause neuritic pathology. To investigate how α-Syn oligomers may be linked to aberrant neurite pathology, we modeled different stages of α-Syn aggregation in vitro and investigated the interplay of α-Syn aggregates with proteins involved in axonal transport. The interaction of wild type α-Syn (WTS) and α-Syn variants (E57K, A30P, and aSyn(30-110)) with kinesin, tubulin, and the microtubule (MT)-associated proteins, MAP2 and Tau, is stronger for multimers than for monomers. WTS seeds but not α-Syn oligomers significantly and dose-dependently reduced Tau-promoted MT assembly in vitro. In contrast, MT gliding velocity across kinesin-coated surfaces was significantly decreased in the presence of α-Syn oligomers but not WTS seeds or fibrils (aSyn(30-110) multimers). In a human dopaminergic neuronal cell line, mild overexpression of the oligomerizing E57K α-Syn variant significantly impaired neurite network morphology without causing profound cell death. In accordance with these findings, MT stability, neuritic kinesin, and neuritic kinesin-dependent cargoes were significantly reduced by the presence of α-Syn oligomers. In summary, different α-Syn species act divergently on the axonal transport machinery. These findings provide new insights into α-Syn oligomer-driven neuritic pathology as one of the earliest events in synucleinopathies.
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Affiliation(s)
- Iryna Prots
- Junior Research Group III, Nikolaus Fiebiger Centre for Molecular Medicine, Universitaetsklinikum Erlangen, Glueckstrasse 6, 91054 Erlangen, Germany
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Maloney A, Herskowitz LJ, Koch SJ. Effects of surface passivation on gliding motility assays. PLoS One 2011; 6:e19522. [PMID: 21674032 PMCID: PMC3108588 DOI: 10.1371/journal.pone.0019522] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2010] [Accepted: 04/06/2011] [Indexed: 11/18/2022] Open
Abstract
In this study, we report differences in the observed gliding speed of
microtubules dependent on the choice of bovine casein used as a surface
passivator. We observed differences in both speed and support of microtubules in
each of the assays. Whole casein, comprised of αs1,
αs2, β, and κ casein, supported motility and averaged
speeds of 966±7 nm/s. Alpha casein can be purchased as a combination of
αs1 and αs2 and supported gliding motility and
average speeds of 949±4 nm/s. Beta casein did not support motility very
well and averaged speeds of 870±30 nm/s. Kappa casein supported motility
very poorly and we were unable to obtain an average speed. Finally, we observed
that mixing alpha, beta, and kappa casein with the proportions found in bovine
whole casein supported motility and averaged speeds of 966±6 nm/s.
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Affiliation(s)
- Andy Maloney
- Department of Physics and Astronomy and Center for High Technology Materials, University of New Mexico, Albuquerque, New Mexico, United States of America.
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Dráberová E, Sulimenko V, Sulimenko T, Böhm KJ, Dráber P. Recovery of tubulin functions after freeze-drying in the presence of trehalose. Anal Biochem 2010; 397:67-72. [DOI: 10.1016/j.ab.2009.10.016] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2009] [Revised: 09/22/2009] [Accepted: 10/08/2009] [Indexed: 10/20/2022]
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Chang CH, Peng CH, Chen KC, Huang HB, Chiu WT, Peng RY. Shock membrane electropotential drops and limited diffusive distance of β-amyloids in cerebral neurons are detrimental enhancement to Alzheimer's diseases. Colloids Surf B Biointerfaces 2009; 73:339-45. [DOI: 10.1016/j.colsurfb.2009.06.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2009] [Revised: 05/29/2009] [Accepted: 06/02/2009] [Indexed: 12/20/2022]
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Greene AC, Trent AM, Bachand GD. Controlling kinesin motor proteins in nanoengineered systems through a metal-binding on/off switch. Biotechnol Bioeng 2008; 101:478-86. [DOI: 10.1002/bit.21927] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Macůrek L, Dráberová E, Richterová V, Böhm KJ, Dráber P. Monoclonal antibodies KN-02 and KN-03 against the heavy chain of kinesin. HYBRIDOMA AND HYBRIDOMICS 2002; 21:457-62. [PMID: 12573109 DOI: 10.1089/153685902321043981] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
The present paper describes two new monoclonal antibodies (MAbs) KN-02 and KN-03 against the heavy chain of conventional kinesin. The kinesin was purified from porcine brain by a combined procedure of ion exchange chromatography, tripolyphosphate-supported microtubule affinity-binding, and gel filtration. Hybridoma cell lines producing antibodies were obtained after immunization of a Balb/c mouse with kinesin and subsequent fusion of the spleen cells with Sp2/0 myeloma cells. The specificity was verified by enzyme-linked immunosorbent assay (ELISA) and further confirmed by immunoblotting and immunoprecipitation analysis. The antibodies recognize different epitopes on the heavy chain of the kinesin molecule as demonstrated by chymotryptic cleavage of kinesin followed by immunoblotting. Differential location of relevant epitopes was also documented by in vitro binding experiments with purified kinesin and taxol-stabilized microtubules. While the KN-03 antibody decorated microtubules, no such staining was observed with KN-02 antibody. The antibodies have a lower affinity to sodium dodecyl sulfate (SDS)-denatured kinesin, but immunofluorescence on fixed cells gave strong dot-like staining characteristic for localization of kinesin on vesicles. The same staining pattern was observed in different cell types. Double-label fluorescence with polyclonal anti-tubulin antibody revealed a co-distribution of stained vesicles with microtubules on the cell periphery. The antibodies KN-02 and KN-03 are therefore valuable tools for localization of kinesins in cells of different tissue origin.
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Affiliation(s)
- Libor Macůrek
- Institute of Molecular Genetics, Academy of Sciences of the Czech Republic, Vídenská 1083, 142 20 Prague 4, Czech Republic
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Böhm KJ, Stracke R, Baum M, Zieren M, Unger E. Effect of temperature on kinesin-driven microtubule gliding and kinesin ATPase activity. FEBS Lett 2000; 466:59-62. [PMID: 10648812 DOI: 10.1016/s0014-5793(99)01757-3] [Citation(s) in RCA: 68] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
DeCuevas et al. [J. Cell Biol. 116 (1992) 957-965] demonstrated by circular dichroism spectroscopy for the kinesin stalk fragment that shifting temperature from 25 to 30 degrees C caused a conformational transition. To gain insight into functional consequences of such a transition, we studied the temperature dependence of a full-length kinesin by measuring both the velocity of microtubule gliding across kinesin-coated surfaces and microtubule-promoted kinesin ATPase activity in solution. The corresponding Arrhenius plots revealed distinct breaks at 27 degrees C, corroborating the temperature-dependent conformational transition for a motility-competent full-length kinesin. Microtubules were found to glide up to 45 degrees C; at higher temperatures, kinesin was irreversibly damaged.
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Affiliation(s)
- K J Böhm
- Institute of Molecular Biotechnology, Research Group of Molecular Cytology/Electron Microscopy, Beutenbergstrasse 11, D-07745, Jena, Germany.
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Böhm KJ, Vater W, Russwurm S, Reinhart K, Unger E. Lipopolysaccharide-caused fragmentation of individual microtubules in vitro observed by video-enhanced differential interference contrast microscopy. FEBS Lett 1998; 425:134-6. [PMID: 9541022 DOI: 10.1016/s0014-5793(98)00220-8] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Microtubule disassembly is commonly believed to be a process of endwise tubulin dimer release. The present study demonstrates by video interference contrast microscopy that Escherichia coli lipopolysaccharide (LPS) caused microtubule disassembly in vitro by both endwise shortening and fragmentation. In contrast, the microtubules were only shortened from their ends in the presence of DNA, used as another example of a macromolecular microtubule effector. LPS-caused microtubule fragmentation was confirmed by transmission electron microscopy. Because of its ability to induce both fragmentation and endwise shortening, LPS, which is involved in sepsis pathogenesis, has to be regarded as a highly active microtubule-destabilizing agent.
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Affiliation(s)
- K J Böhm
- Institute of Molecular Biotechnology, Department of Molecular Cytology/Electron Microscopy, Jena, Germany.
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