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Wang Y, Liu K, Ma Q, Tan Y, Du W, Lv Y, Tian Y, Wang H. Pancreatic cancer biomarker detection by two support vector strategies for recursive feature elimination. Biomark Med 2019; 13:105-121. [PMID: 30767554 DOI: 10.2217/bmm-2018-0273] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022] Open
Abstract
AIM Pancreatic cancer is one of the worst malignant tumors in prognosis. Therefore, to reduce the mortality rate of pancreatic cancer, early diagnosis and prompt treatment are particularly important. RESULTS We put forward a new feature-selection method that was used to find clinical markers for pancreatic cancer by combination of Support Vector Machine Recursive Feature Elimination (SVM-RFE) and Large Margin Distribution Machine Recursive Feature Elimination (LDM-RFE) algorithms. As a result, seven differentially expressed genes were predicted as specific biomarkers for pancreatic cancer because of their highest accuracy of classification on cancer and normal samples. CONCLUSION Three (MMP7, FOS and A2M) out of the seven predicted gene markers were found to encode proteins secreted into urine, providing potential diagnostic evidences for pancreatic cancer.
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Affiliation(s)
- Yan Wang
- Key Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.,Cancer Systems Biology Center, China-Japan Union Hospital, Jilin University, Changchun 130033, PR China
| | - Keke Liu
- Key Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China
| | - Qin Ma
- Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA
| | - Yongfei Tan
- Basic Medicine School, Jilin University, Changchun 130021, PR China
| | - Wei Du
- Key Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.,Cancer Systems Biology Center, China-Japan Union Hospital, Jilin University, Changchun 130033, PR China
| | - Yidan Lv
- Key Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China
| | - Yuan Tian
- Key Laboratory of Symbol Computation & Knowledge Engineering of Ministry of Education, College of Computer Science & Technology, Jilin University, Changchun 130012, PR China.,School of Artificial Intelligence, Jilin University, Changchun 130021, PR China
| | - Hao Wang
- Department of Hepatopancreatobiliary Surgery, Second Affiliated Hospital of Harbin Medical University, Harbin 150086, PR China
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Xue F, Qu F, Han W, Xia L, You J. Aggregation-induced emission enhancement of gold nanoclusters triggered by silicon nanoparticles for ratiometric detection of protamine and trypsin. Anal Chim Acta 2018; 1046:170-178. [PMID: 30482296 DOI: 10.1016/j.aca.2018.09.033] [Citation(s) in RCA: 39] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2018] [Revised: 09/12/2018] [Accepted: 09/17/2018] [Indexed: 12/21/2022]
Abstract
Metal nanoclusters protected by glutathione (GSH) have attracted a wide attention due to the unique aggregation-induced emission (AIE) feature. However, the "trigger" effects of ethanol, temperature, pH values, and metal ions may restrict the application of these particles. In this work, the amino modified silicon nanoparticles (SiNPs) and GSH-capped gold nanoclusters (GSH-AuNCs) can self-assemble into well-defined spherical particles due to the electrostatic interaction. As a result, the unique aggregation-induced emission enhancement (AIEE) of GSH-AuNCs arises at 570 nm, and the SiNPs keep their own blue fluorescence at 450 nm, so a novel nanohybrid probe (SiNPs@GSH-AuNCs) with dual-emission property has been constructed. When protamine is added to SiNPs@GSH-AuNCs, the cationic protamine can compete with SiNPs and absorb onto the surface of GSH-AuNCs, which inhibits the self-assembly and leads to the fluorescence quenching of GSH-AuNCs; while trypsin can catalyze the hydrolysis of protamine, the self-assembly starts again, producing the AIEE recovery. In the whole process, the SiNPs act as an internal standard and their emission stays constant. By means of the fluorescence intensity ratios I570/I450, the linear range of protamine is from 0.15 to 3.00 μg mL-1 with the limit of detection (LOD) of 0.07 μg mL-1, and trypsin shows a linear response in the range from 10 to 100 ng mL-1 with LOD of 4.50 ng mL-1. Furthermore, this strategy exhibits good sensitivity and selectivity, and has been further validated by applying it for the determination of protamine and trypsin in serum samples.
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Affiliation(s)
- Fangfang Xue
- The Key Laboratory of Life-Organic Analysis, Qufu Normal University, Qufu, 273165, Shandong, China; Key Laboratory of Pharmaceutical Intermediates and Analysis of Natural Medicine, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Fei Qu
- The Key Laboratory of Life-Organic Analysis, Qufu Normal University, Qufu, 273165, Shandong, China; Key Laboratory of Pharmaceutical Intermediates and Analysis of Natural Medicine, Qufu Normal University, Qufu, 273165, Shandong, China.
| | - Wenli Han
- Laboratory Animal Center, Chongqing Medical University, Chongqing, China
| | - Lian Xia
- The Key Laboratory of Life-Organic Analysis, Qufu Normal University, Qufu, 273165, Shandong, China; Key Laboratory of Pharmaceutical Intermediates and Analysis of Natural Medicine, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Jinmao You
- The Key Laboratory of Life-Organic Analysis, Qufu Normal University, Qufu, 273165, Shandong, China; Key Laboratory of Pharmaceutical Intermediates and Analysis of Natural Medicine, Qufu Normal University, Qufu, 273165, Shandong, China; Northwest Institute of Plateau Biology, Chinese Academy of Sciences, Xining, 810001, China
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Tang B, Yang Y, Wang G, Yao Z, Zhang L, Wu HC. A simple fluorescent probe based on a pyrene derivative for rapid detection of protamine and monitoring of trypsin activity. Org Biomol Chem 2015; 13:8708-12. [PMID: 26178260 DOI: 10.1039/c5ob01034a] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
We report the synthesis of a simple pyrene derivative and its application in protamine detection and monitoring of trypsin activity. This assay can be conducted in aqueous solution and features rapid response, visual detection, high sensitivity and selectivity. The limit of detection of protamine was 0.5 μg mL(-1). The IC50 value of a soybean trypsin inhibitor was estimated to be 0.51 U mL(-1).
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Affiliation(s)
- Baiyang Tang
- Key Laboratory for Biomedical Effects of Nanomaterials & Nanosafety, Institute of High Energy Physics, Chinese Academy of Sciences, Beijing 100049, China.
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Dugernier T, Laterre PF, Reynaert M, Deby-Dupont G. Compartmentalization of the protease-antiprotease balance in early severe acute pancreatitis. Pancreas 2005; 31:168-73. [PMID: 16025004 DOI: 10.1097/01.mpa.0000170681.89652.95] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 12/10/2022]
Abstract
OBJECTIVE To assess the balance between trypsin and protease inhibitors simultaneously in the systemic circulation and in the thoracic lymph and peritoneal exudate. METHODS Twenty patients with early severe acute pancreatitis were studied. Enzymatically active and immunoreactive trypsin in conjunction with its major inhibitors were measured in the 3 compartments at the onset of end-organ failure(s). The molecular forms of trypsin were determined in the lymph and ascites by gel filtration chromatography to separate trypsinogen and free-and inhibitor-bound trypsin. RESULTS Both enzymatically active trypsin and immunoreactive trypsin levels were highest in ascites and lymph compared with the systemic circulation. Intracompartmental alpha1- protease inhibitor gradient moved in the opposite direction, whereas alpha2 macroglobulin concentration was highest in ascites and lowest in the lymph. Although most of the enzymatically and immunoreactive material in ascites and lymph consisted of trypsin complexed with alpha2 macroglobulin and trypsinogen, respectively, free active trypsin was detected in more than 80% of the samples. CONCLUSIONS In patients with early severe acute pancreatitis, there is a significant trypsinogen activation resulting in protease-antiprotease imbalance and thereby free enzymatically active trypsin in the 2 body fluid compartments in close vicinity to the inflammatory process. This may be involved in the pathophysiology of local and distant tissue damage.
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Affiliation(s)
- Thierry Dugernier
- Department of Intensive Care, St. Luc University Hospital, Brussels, Belgium.
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