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For: Smith PE, Tanner JJ. Conformations of nicotinamide adenine dinucleotide (NAD(+)) in various environments. J Mol Recognit 2000;13:27-34. [PMID: 10679894 DOI: 10.1002/(sici)1099-1352(200001/02)13:1<27::aid-jmr483>3.0.co;2-8] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Number Cited by Other Article(s)
1
Smith HE, Mackenzie AM, Seddon C, Mould R, Kalampouka I, Malakar P, Needham SR, Beis K, Bell JD, Nunn A, Botchway SW. The use of NADH anisotropy to investigate mitochondrial cristae alignment. Sci Rep 2024;14:5980. [PMID: 38472304 DOI: 10.1038/s41598-024-55780-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Accepted: 02/26/2024] [Indexed: 03/14/2024]  Open
2
Smolin AG. Ab Initio Studies of NMNH(2-) Conformers in Water-Methanol Solutions: Comparative Analysis of the Biexponential Fluorescence Signals for NMNH(2-) and NADH. J Phys Chem B 2022;126:10870-10881. [PMID: 36524597 DOI: 10.1021/acs.jpcb.2c08220] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
3
Gorbunova IA, Sasin ME, Beltukov YM, Semenov AA, Vasyutinskii OS. Anisotropic relaxation in NADH excited states studied by polarization-modulation pump-probe transient spectroscopy. Phys Chem Chem Phys 2020;22:18155-18168. [PMID: 32766648 DOI: 10.1039/d0cp02496a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
4
Gorbunova IA, Sasin ME, Rubayo-Soneira J, Smolin AG, Vasyutinskii OS. Two-Photon Excited Fluorescence Dynamics in NADH in Water-Methanol Solutions: The Role of Conformation States. J Phys Chem B 2020;124:10682-10697. [PMID: 33175534 DOI: 10.1021/acs.jpcb.0c07620] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
5
Cadena-Caicedo A, Gonzalez-Cano B, López-Arteaga R, Esturau-Escofet N, Peon J. Ultrafast Fluorescence Signals from β-Dihydronicotinamide Adenine Dinucleotide: Resonant Energy Transfer in the Folded and Unfolded Forms. J Phys Chem B 2020;124:519-530. [PMID: 31876417 DOI: 10.1021/acs.jpcb.9b10012] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
6
Cuaran-Acosta D, Londoño-Larrea P, Zaballos-García E, Pérez-Prieto J. Reversible pH-induced fluorescence colour change of gold nanoclusters based on pH-regulated surface interactions. Chem Commun (Camb) 2019;55:1604-1606. [DOI: 10.1039/c8cc06664g] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
7
Molano-Arevalo JC, Gonzalez W, Jeanne Dit Fouque K, Miksovska J, Maitre P, Fernandez-Lima F. Insights from ion mobility-mass spectrometry, infrared spectroscopy, and molecular dynamics simulations on nicotinamide adenine dinucleotide structural dynamics: NAD+vs. NADH. Phys Chem Chem Phys 2018;20:7043-7052. [PMID: 29473073 DOI: 10.1039/c7cp05602h] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
8
Peng HL, Callender R. Mechanistic Analysis of Fluorescence Quenching of Reduced Nicotinamide Adenine Dinucleotide by Oxamate in Lactate Dehydrogenase Ternary Complexes. Photochem Photobiol 2017;93:1193-1203. [PMID: 28391608 PMCID: PMC5603363 DOI: 10.1111/php.12775] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Accepted: 03/11/2017] [Indexed: 11/27/2022]
9
Foloppe N, Chen IJ. Towards understanding the unbound state of drug compounds: Implications for the intramolecular reorganization energy upon binding. Bioorg Med Chem 2016;24:2159-89. [PMID: 27061672 DOI: 10.1016/j.bmc.2016.03.022] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2016] [Revised: 03/09/2016] [Accepted: 03/12/2016] [Indexed: 01/24/2023]
10
Giangreco I, Packer MJ. Pharmacophore binding motifs for nicotinamide adenine dinucleotide analogues across multiple protein families: a detailed contact-based analysis of the interaction between proteins and NAD(P) cofactors. J Med Chem 2013;56:6175-89. [PMID: 23889609 DOI: 10.1021/jm400644z] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
11
The mechanism of discrimination between oxidized and reduced coenzyme in the aldehyde dehydrogenase domain of Aldh1l1. Chem Biol Interact 2013;202:62-9. [PMID: 23295222 DOI: 10.1016/j.cbi.2012.12.015] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Revised: 12/11/2012] [Accepted: 12/15/2012] [Indexed: 11/20/2022]
12
Study on nicotinamide adenine dinucleotide adsorbed at nano-boehmite/water and nano-corundum/water interfaces. Colloids Surf B Biointerfaces 2012;102:398-404. [PMID: 23006575 DOI: 10.1016/j.colsurfb.2012.07.029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2012] [Revised: 07/21/2012] [Accepted: 07/24/2012] [Indexed: 11/22/2022]
13
Kuppuraj G, Sargsyan K, Hua YH, Merrill AR, Lim C. Linking distinct conformations of nicotinamide adenine dinucleotide with protein fold/function. J Phys Chem B 2011;115:7932-9. [PMID: 21612228 DOI: 10.1021/jp1118663] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
14
Yarus M. Getting past the RNA world: the initial Darwinian ancestor. Cold Spring Harb Perspect Biol 2011;3:cshperspect.a003590. [PMID: 20719875 DOI: 10.1101/cshperspect.a003590] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
15
Kahraman A, Morris RJ, Laskowski RA, Favia AD, Thornton JM. On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins. Proteins 2010;78:1120-36. [PMID: 19927322 DOI: 10.1002/prot.22633] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
16
Link A, Heidler P, Kaiser M, Brun R. Parallel synthesis of a series of non-functional ATP/NAD analogs with activity against trypanosomatid parasites. Mol Divers 2009;14:215-24. [PMID: 19484371 DOI: 10.1007/s11030-009-9160-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2009] [Accepted: 05/09/2009] [Indexed: 11/29/2022]
17
Schroeder EK, Basso LA, Santos DS, de Souza ON. Molecular dynamics simulation studies of the wild-type, I21V, and I16T mutants of isoniazid-resistant Mycobacterium tuberculosis enoyl reductase (InhA) in complex with NADH: toward the understanding of NADH-InhA different affinities. Biophys J 2005;89:876-84. [PMID: 15908576 PMCID: PMC1366637 DOI: 10.1529/biophysj.104.053512] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
18
Mort CJW, Migaud ME, Galione A, Potter BVL. Aplysia californica mediated cyclisation of novel 3'-modified NAD+ analogues: a role for hydrogen bonding in the recognition of cyclic adenosine 5'-diphosphate ribose. Bioorg Med Chem 2004;12:475-87. [PMID: 14723966 DOI: 10.1016/j.bmc.2003.10.012] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
19
Perola E, Charifson PS. Conformational Analysis of Drug-Like Molecules Bound to Proteins:  An Extensive Study of Ligand Reorganization upon Binding. J Med Chem 2004;47:2499-510. [PMID: 15115393 DOI: 10.1021/jm030563w] [Citation(s) in RCA: 326] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
20
van den Heuvel RHH, Westphal AH, Heck AJR, Walsh MA, Rovida S, van Berkel WJH, Mattevi A. Structural studies on flavin reductase PheA2 reveal binding of NAD in an unusual folded conformation and support novel mechanism of action. J Biol Chem 2003;279:12860-7. [PMID: 14703520 DOI: 10.1074/jbc.m313765200] [Citation(s) in RCA: 65] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
21
Lau SK, Chass GA, Penke B, Csizmadia IG. An exploratory ab initio conformational analysis of selected fragments of nicotinamide adenine dinucleotide (NAD+). Part II: adenosine. ACTA ACUST UNITED AC 2003. [DOI: 10.1016/j.theochem.2003.08.118] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
22
Bottoms CA, Smith PE, Tanner JJ. A structurally conserved water molecule in Rossmann dinucleotide-binding domains. Protein Sci 2002;11:2125-37. [PMID: 12192068 PMCID: PMC2373605 DOI: 10.1110/ps.0213502] [Citation(s) in RCA: 108] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
23
Vistoli G, Pedretti A, Villa L, Testa B. The solute-solvent system: solvent constraints on the conformational dynamics of acetylcholine. J Am Chem Soc 2002;124:7472-80. [PMID: 12071756 DOI: 10.1021/ja0119999] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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