1
|
Martín-Fernández C, Montero-Campillo MM, Alkorta I. Hydrogen Bonds Are Never of an "Anti-electrostatic" Nature: A Brief Tour of a Misleading Nomenclature. J Phys Chem Lett 2024; 15:4105-4110. [PMID: 38634115 PMCID: PMC11033937 DOI: 10.1021/acs.jpclett.4c00779] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2024] [Revised: 04/02/2024] [Accepted: 04/03/2024] [Indexed: 04/19/2024]
Abstract
A large amount of scientific works have contributed through the years to rigorously reflect the different forces leading to the formation of hydrogen bonds, the electrostatic and polarization ones being the most important among them. However, we have witnessed lately with the emergence of a new terminology, anti-electrostatic hydrogen bonds (AEHBs), that seems to contradict this reality. This nomenclature is used in the literature to describe hydrogen bonds between equally charged systems to justify the existence of these species, despite numerous proofs showing that AEHBs are, as any other hydrogen bond between neutral species, mostly due to electrostatic forces. In this Viewpoint, we summarize the state of the art regarding this issue, try to explain why this terminology is very misleading, and strongly recommend avoiding its use based on the hydrogen bond physical grounds.
Collapse
Affiliation(s)
| | - M. Merced Montero-Campillo
- Departamento
de Química (Módulo 13, Facultad de Ciencias),
Campus de Excelencia UAM-CSIC, Universidad
Autónoma de Madrid, 28049 Madrid, Spain
| | - Ibon Alkorta
- Instituto
de Química Médica (CSIC), 28006 Madrid, Spain
| |
Collapse
|
2
|
Martín-Fernández C, Ferrer M, Alkorta I, Montero-Campillo MM, Elguero J, Mandado M. Metastable Charged Dimers in Organometallic Species: A Look into Hydrogen Bonding between Metallocene Derivatives. Inorg Chem 2023; 62:16523-16537. [PMID: 37755334 DOI: 10.1021/acs.inorgchem.3c02355] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/28/2023]
Abstract
Multiply charged complexes bound by noncovalent interactions have been previously described in the literature, although they were mostly focused on organic and main group inorganic systems. In this work, we show that similar complexes can also be found for organometallic systems containing transition metals and deepen in the reasons behind the existence of these species. We have studied the structures, binding energies, and dissociation profiles in the gas phase of a series of charged hydrogen-bonded dimers of metallocene (Ru, Co, Rh, and Mn) derivatives isoelectronic with the ferrocene dimer. Our results indicate that the carboxylic acid-containing dimers are more strongly bonded and present larger barriers to dissociation than the amide ones and that the cationic complexes tend to be more stable than the anionic ones. Additionally, we describe for the first time the symmetric proton transfer that can occur while in the metastable phase. Finally, we use a density-based energy decomposition analysis to shine light on the nature of the interaction between the dimers.
Collapse
Affiliation(s)
| | - Maxime Ferrer
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid, Spain
- PhD Programme in Theoretical Chemistry and Computational Modelling, Doctoral School, Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - Ibon Alkorta
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid, Spain
| | - M Merced Montero-Campillo
- Departamento de Química (Módulo 13, Facultad de Ciencias), Campus de Excelencia UAM-CSIC, Universidad Autónoma de Madrid, Cantoblanco, 28049 Madrid, Spain
| | - José Elguero
- Instituto de Química Médica (CSIC), Juan de la Cierva, 3, 28006 Madrid, Spain
| | - Marcos Mandado
- Departamento de Química Física, Universidade de Vigo, Lagoas-Marcosende s/n, 36310 Vigo, Spain
| |
Collapse
|
3
|
Dash SG, Thakur TS. Cation⋯cation hydrogen bonds in synephrine salts: a typical interaction in an unusual environment. Phys Chem Chem Phys 2019; 21:20647-20660. [DOI: 10.1039/c9cp03164b] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
Computational studies of hydrogen-bonded cationic species observed in the synephrine salts point towards the stabilizing nature of hydrogen bonds and highlights their contribution in reducing destabilization caused by coulombic repulsion.
Collapse
Affiliation(s)
- Sibananda G. Dash
- Academy of Scientific and Innovative Research (AcSIR)
- CSIR-Central Drug Research Institute (CSIR-CDRI) campus
- Lucknow 226 031
- India
- Molecular and Structural Biology Division
| | - Tejender S. Thakur
- Academy of Scientific and Innovative Research (AcSIR)
- CSIR-Central Drug Research Institute (CSIR-CDRI) campus
- Lucknow 226 031
- India
- Molecular and Structural Biology Division
| |
Collapse
|
4
|
Emami M, Ślepokura KA, Trzebiatowska M, Noshiranzadeh N, Kinzhybalo V. Oxyanion clusters with antielectrostatic hydrogen bonding (AEHB) in tetraalkylammonium hypodiphosphates. CrystEngComm 2018. [DOI: 10.1039/c8ce00880a] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Organic–inorganic salts of hypodiphosphoric acid with tetraalkylammonium cations have been synthesized and characterized by X-ray crystallography and IR spectroscopy.
Collapse
Affiliation(s)
- Marzieh Emami
- Department of Chemistry
- Faculty of Sciences
- University of Zanjan
- Zanjan
- Iran
| | | | - Monika Trzebiatowska
- Institute of Low Temperature and Structure Research
- Polish Academy of Sciences
- 50-422 Wrocław
- Poland
| | | | - Vasyl Kinzhybalo
- Institute of Low Temperature and Structure Research
- Polish Academy of Sciences
- 50-422 Wrocław
- Poland
| |
Collapse
|
5
|
McNally JS, Wang XP, Hoffmann C, Wilson AD. Self-assembly of molecular ions via like-charge ion interactions and through-space defined organic domains. Chem Commun (Camb) 2017; 53:10934-10937. [DOI: 10.1039/c7cc06401b] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Select tertiary ammonium bicarbonates self-assemble assisted by the first bicarbonate like-charge hydrogen-bonded ion pairs documented in an aqueous solution.
Collapse
Affiliation(s)
- J. S. McNally
- Idaho National Laboratory (INL) P.O. Box
- Idaho Falls
- USA
| | - X. P. Wang
- Chemical and Engineering Materials Division, Oak Ridge National Laboratory (ORNL) Institution Oak Ridge
- USA
| | - C. Hoffmann
- Chemical and Engineering Materials Division, Oak Ridge National Laboratory (ORNL) Institution Oak Ridge
- USA
| | - A. D. Wilson
- Idaho National Laboratory (INL) P.O. Box
- Idaho Falls
- USA
| |
Collapse
|
6
|
Şerb MD, Kalf I, Englert U. Biguanide and squaric acid as pH-dependent building blocks in crystal engineering. CrystEngComm 2014. [DOI: 10.1039/c4ce01643b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Biguanides and squaric acid are attractive partners for crystal engineering: they incorporate multiple sites that can donate or accept hydrogen bonds. Protonation equilibria in their solutions and the outcome of crystallization experiments are pH dependent: 10 different salts have been obtained from N,N-dimethylbiguanide, N-phenylbiguanide and N-o-tolylbiguanide.
Collapse
Affiliation(s)
- Mihaela-Diana Şerb
- Faculty of Applied Chemistry and Materials Science
- University Politehnica of Bucharest
- 011061 Bucharest, Romania
| | - Irmgard Kalf
- Institute of Inorganic Chemistry
- RWTH Aachen University
- Aachen 52074, Germany
| | - Ulli Englert
- Institute of Inorganic Chemistry
- RWTH Aachen University
- Aachen 52074, Germany
| |
Collapse
|
7
|
Braga D, d’Agostino S, Grepioni F. Shape Takes the Lead: Templating Organic 3D-Frameworks around Organometallic Sandwich Compounds. Organometallics 2012. [DOI: 10.1021/om200837t] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Affiliation(s)
- Dario Braga
- Dipartimento di Chimica G. Ciamician, Alma Mater Studiorum Università di Bologna,Via Selmi
2, 40126 Bologna, Italy
| | - Simone d’Agostino
- Dipartimento di Chimica G. Ciamician, Alma Mater Studiorum Università di Bologna,Via Selmi
2, 40126 Bologna, Italy
| | - Fabrizia Grepioni
- Dipartimento di Chimica G. Ciamician, Alma Mater Studiorum Università di Bologna,Via Selmi
2, 40126 Bologna, Italy
| |
Collapse
|
8
|
Ramachandran C, Ruckenstein E. Density functional theoretical studies of the isomers of croconic acid and their dimers. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.06.024] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
|
9
|
The role of subphase chemistry in controlling monolayer behaviour. J Colloid Interface Sci 2009; 331:206-13. [DOI: 10.1016/j.jcis.2008.11.046] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2008] [Revised: 11/18/2008] [Accepted: 11/19/2008] [Indexed: 11/20/2022]
|
10
|
D'Oria E, Novoa JJ. On the hydrogen bond nature of the C–H⋯F interactions in molecular crystals. An exhaustive investigation combining a crystallographic database search and ab initio theoretical calculations. CrystEngComm 2008. [DOI: 10.1039/b717276c] [Citation(s) in RCA: 109] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
11
|
Gavilan E, Audebrand N. Calcium croconate and calcium oxalato-croconate complexes with 2D and 3D crystal structures. Polyhedron 2007. [DOI: 10.1016/j.poly.2007.08.018] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
|
12
|
Braga D, Giaffreda SL, Grepioni F, Maini L, Polito M. Design, synthesis, characterization and utilization of hydrogen bonded networks based on functionalized organometallic sandwich compounds and the occurrence of crystal polymorphism. Coord Chem Rev 2006. [DOI: 10.1016/j.ccr.2005.11.014] [Citation(s) in RCA: 70] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
13
|
The nature of the AuI ... AuI Interactions between Cationic [AuL2]+ Complexes in the Solid State. Theor Chem Acc 2006. [DOI: 10.1007/s00214-006-0083-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
|
14
|
Solvent-mediated intermolecular bonds: cation–cation and anion–anion interactions in solution showing the signature of chemical bonds. ACTA ACUST UNITED AC 2005. [DOI: 10.1016/j.theochem.2005.01.055] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
15
|
D'Oria E, Novoa JJ. The strength–length relationship at the light of ab initio computations: does it really hold? CrystEngComm 2004. [DOI: 10.1039/b406743f] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
16
|
Braga D, Curzi M, Maini L, Polito M, Grepioni F. Crystal synthesis of hybrid organometallic–inorganic hydrogen bonded salts of acid oxoanions. Dalton Trans 2004:2432-7. [PMID: 15303155 DOI: 10.1039/b400667d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Partially deprotonated inorganic oxoanions derived from sulfuric and phosphoric acids have been used to assemble organometallic cations in inorganic-organometallic hybrid systems. The organometallic sandwich cations [(eta(5)-C(5)H(5))(2)Co]+, [(eta(5)-C(5)Me(5))(2)Co]+ and [(eta(5)-C(5)Me(5))(2)Fe]+ have been used because they do not interfere with hydrogen bonding formation forcing self-assembling of the inorganic acids anions HSO(4)(-) and H(2)PO(4)(-) into hydrogen bonded mono- and bi-dimensional networks.
Collapse
Affiliation(s)
- Dario Braga
- Dipartimento di Chimica G. Ciamician, Universita di Bologna, Via Selmi 2, 40126 Bologna, Italy.
| | | | | | | | | |
Collapse
|
17
|
Larsson K, Öhrström L. Cobalt 2,2′-biimidazole complexes co-crystallised with di-acids — synthesis, structure and quantum chemical calculations. CrystEngComm 2004. [DOI: 10.1039/b406518b] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
18
|
Braga D, Maini L, Polito M, Tagliavini E, Grepioni F. Design of hydrogen bonded networks based on organometallic sandwich compounds. Coord Chem Rev 2003. [DOI: 10.1016/s0010-8545(03)00108-5] [Citation(s) in RCA: 100] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
19
|
Anion-directed structural diversity in the complexes of Cd(II)-arylazoimidazole: synthesis, spectral characterization and crystal structure. Polyhedron 2003. [DOI: 10.1016/j.poly.2003.07.006] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
20
|
Ray U, Chand B, Kumar Dasmahapatra A, Mostafa G, Lu TH, Sinha C. 1D and 2D network of ReO4− bonded azoimidazoles. INORG CHEM COMMUN 2003. [DOI: 10.1016/s1387-7003(03)00058-3] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
21
|
Braga D, Emiliani D, Cojazzi G, Maini L, Polito M, Grepioni F. The reaction of the organometallic acid [(η5-C5H4COOH)2CoIII]+ with HBr and HI. Preparation and characterisation of [(η5-C5H4COOH)2CoIII]Br and [(η5-C5H4COOH)2CoIII]I and hydrogen bridges between cations. J Mol Struct 2003. [DOI: 10.1016/s0022-2860(02)00508-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
|
22
|
Kawata S, Adachi K, Sugiyama Y, Kabir MK, Kaizaki S. Proton-transfer-mediated crystal engineering using 1,4,5,6-tetrahydro-5,6-dioxo-2,3-pyrazinedicarbonitrile with 4,4′-bipyridine. CrystEngComm 2002. [DOI: 10.1039/b205927b] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
23
|
Novoa JJ, Lafuente P, Del Sesto RE, Miller JS. On the existence of long C–C bonds between pairs of anions which repel: when and why? A test case on the [TCNE]22−dimers found in ionic crystals. CrystEngComm 2002. [DOI: 10.1039/b202400b] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
24
|
Kumara Swamy KC, Kumaraswamy S, Kommana P. Very strong C-H...O, N-H...O, and O-H...O hydrogen bonds involving a cyclic phosphate. J Am Chem Soc 2001; 123:12642-9. [PMID: 11741429 DOI: 10.1021/ja010713x] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Very short C-H...O, N-H...O, and O-H...O hydrogen bonds have been generated utilizing the cyclic phosphate [CH2(6-t-Bu-4-Me-C6H2O)2]P(O)OH (1). X-ray structures of (i) 1 (unsolvated, two polymorphs), 1...EtOH, and 1...MeOH, (ii) [imidazolium](+)[CH2(6-t-Bu-4-Me-C6H2O)2PO2](-)...MeOH [2], (iii) [HNC5H4-N=N-C5H4NH](2+)[(CH2(6-t-Bu-4-Me-C6H2O)2PO2)2](2-)...4CH3CN...H2O [3], (v) [K, 18-crown-6](+)[(CH2(6-t-Bu-4-Me-C6H2O)2P(O)OH)(CH2(6-t-Bu-4-Me-C6H2O)2PO2)](-)...2THF [4], (vi) 1...cytosine...MeOH [5], (vii) 1...adenine...1/2MeOH [6], and (viii) 1...S-(-)-proline [7] have been determined. The phosphate 1 in both its forms is a hydrogen-bonded dimer with a short O-H...O distance of 2.481(2) [triclinic form] or 2.507(3) A [monoclinic form]. Compound 2 has a helical structure with a very short C-H...O hydrogen bond involving an imidazolyl C-H and methanol in addition to N-H...O hydrogen bonds. A helical motif is also seen in 5. In 3, an extremely short N-H...O hydrogen bond [N...O 2.558(4) A] is observed. Compounds 6 and 7 also exhibit short N-H...O hydrogen bonds. In 1...EtOH, a 12-membered hydrogen-bonded ring motif, with one of the shortest known O-H...O hydrogen bonds [O...O 2.368(4) A], is present. 1...MeOH is a similar dimer with a very short O(-H)...O bond [2.429(3) A]. In 4, the deprotonated phosphate (anion) and the parent acid are held together by a hydrogen bond on one side and a coordinate/covalent bond to potassium on the other; the O-H...O bond is symmetrical and very strong [O...O 2.397(3) A].
Collapse
Affiliation(s)
- K C Kumara Swamy
- School of Chemistry, University of Hyderabad, Hyderabad-500046, AP, India
| | | | | |
Collapse
|
25
|
Braga D, Maini L, Paganelli F, Tagliavini E, Casolari S, Grepioni F. Organometallic building blocks for crystal engineering. Synthesis, structure and hydrogen bonding interactions in [Fe(η5-C5H4CH2(CH3)OH)2], [Fe(η5-C5H3(CH3)COOH)2], [Fe(η5-C5H4CH(CH3)NH(η5-C5H4CH(CH3))] and in the diaminecyclohexane salt [Fe(η5-C5H4COO)2]2−[(1S,2S)-(NH3)2C6H10]2+·2[H2O]. J Organomet Chem 2001. [DOI: 10.1016/s0022-328x(01)00977-9] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
26
|
Braga D, Maini L, Grepioni F, Elschenbroich C, Paganelli F, Schiemann O. Novel Organometallic Building Blocks for Crystal Engineering. Synthesis and Structural Characterization of the Dicarboxylic Acid [Cr0(η6-C6H5COOH)2], of Two Polymorphs of Its Oxidation Derivative [CrI(η6-C6H5COOH)2]+[PF6]-, and of the Zwitterionic Form [CrI(η6-C6H5COOH)(η6-C6H5COO)]. Organometallics 2001. [DOI: 10.1021/om0010722] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
| | | | - Fabrizia Grepioni
- Dipartimento di Chimica, Università di Sassari, Via Vienna 2, 07100 Sassari, Italy
| | | | | | | |
Collapse
|
27
|
Braga D, Cojazzi G, Maini L, Grepioni F. Reversible solid-state interconversion of rhodizonic acid H2C6O6into H6C6O8and the solid-state structure of the rhodizonate dianion C6O62−(aromatic or non-aromatic?). NEW J CHEM 2001. [DOI: 10.1039/b107317f] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
28
|
Grepioni F, Rossini M, Braga D. Hydrogen bonding competition between the polyprotic acid cation [(η5-C5H4COOH)2Co]+ and the polyprotic acid anion [H2PO4]−. CrystEngComm 2001. [DOI: 10.1039/b009265g] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|