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Lam YH, Abramov Y, Ananthula RS, Elward JM, Hilden LR, Nilsson Lill SO, Norrby PO, Ramirez A, Sherer EC, Mustakis J, Tanoury GJ. Applications of Quantum Chemistry in Pharmaceutical Process Development: Current State and Opportunities. Org Process Res Dev 2020. [DOI: 10.1021/acs.oprd.0c00222] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yu-hong Lam
- Computational and Structural Chemistry, Merck & Co., Inc., Rahway, New Jersey 07065, United States
| | - Yuriy Abramov
- Pfizer Worldwide Research & Development, Groton, Connecticut 06340, United States
| | - Ravi S. Ananthula
- Small Molecule Design and Development, Eli Lilly and Company, Bangalore 560103, India
| | - Jennifer M. Elward
- Molecular Design, Data and Computational Sciences, GlaxoSmithKline, Collegeville, Pennsylvania 19426, United States
| | - Lori R. Hilden
- Small Molecule Design and Development, Eli Lilly and Company, Indianapolis, Indiana 46221, United States
| | - Sten O. Nilsson Lill
- Early Product Development and Manufacturing, Pharmaceutical Sciences, R&D, AstraZeneca Gothenburg, Mölndal 431 50, Sweden
| | - Per-Ola Norrby
- Data Science & Modelling, Pharmaceutical Sciences, R&D, AstraZeneca Gothenburg, Mölndal 431 50 Sweden
| | - Antonio Ramirez
- Chemical and Synthetic Development, Bristol-Myers Squibb Company, One Squibb Drive, New Brunswick, New Jersey 08903, United States
| | - Edward C. Sherer
- Computational and Structural Chemistry, Merck & Co., Inc., Rahway, New Jersey 07065, United States
| | - Jason Mustakis
- Pfizer Worldwide Research & Development, Groton, Connecticut 06340, United States
| | - Gerald J. Tanoury
- Process Chemistry, Vertex Pharmaceuticals, 50 Northern Avenue, Boston, Massachusetts 02210, United States
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Koppaka A, Park SH, Hashiguchi BG, Gunsalus NJ, King CR, Konnick MM, Ess DH, Periana RA. Selective C-H Functionalization of Methane and Ethane by a Molecular Sb V Complex. Angew Chem Int Ed Engl 2019; 58:2241-2245. [PMID: 30589173 DOI: 10.1002/anie.201809159] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2018] [Revised: 10/23/2018] [Indexed: 11/10/2022]
Abstract
Owing to the strong nonpolar bonds involved, selective C-H functionalization of methane and ethane to esters remains a challenge for molecular homogeneous chemistry. We report that the computationally predicted main-group p-block SbV (TFA)5 complex selectively functionalizes the C-H bonds of methane and ethane to the corresponding mono and/or diol trifluoroacetate esters at 110-180 °C with yields for ethane of up to 60 % with over 90 % selectivity. Experimental and computational studies support a unique mechanism that involves SbV -mediated C-H activation followed by functionalization of a SbV -alkyl intermediate.
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Affiliation(s)
- Anjaneyulu Koppaka
- The Scripps Energy and Materials Center, Department of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA
| | - Sae Hume Park
- The Scripps Energy and Materials Center, Department of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA
| | - Brian G Hashiguchi
- Hyconix Incorporation, 205 North Michigan Avenue, Suite 2930, Chicago, IL, 60601, USA
| | - Niles J Gunsalus
- The Scripps Energy and Materials Center, Department of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA
| | - Clinton R King
- Department of Chemistry and Biochemistry, Brigham Young University (BYU), Provo, UT, 84602, USA
| | - Michael M Konnick
- Hyconix Incorporation, 205 North Michigan Avenue, Suite 2930, Chicago, IL, 60601, USA
| | - Daniel H Ess
- Department of Chemistry and Biochemistry, Brigham Young University (BYU), Provo, UT, 84602, USA
| | - Roy A Periana
- The Scripps Energy and Materials Center, Department of Chemistry, The Scripps Research Institute, Jupiter, FL, 33458, USA
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Koppaka A, Park SH, Hashiguchi BG, Gunsalus NJ, King CR, Konnick MM, Ess DH, Periana RA. Selective C−H Functionalization of Methane and Ethane by a Molecular Sb
V
Complex. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201809159] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Anjaneyulu Koppaka
- The Scripps Energy and Materials Center Department of Chemistry The Scripps Research Institute Jupiter FL 33458 USA
| | - Sae Hume Park
- The Scripps Energy and Materials Center Department of Chemistry The Scripps Research Institute Jupiter FL 33458 USA
| | - Brian G. Hashiguchi
- Hyconix Incorporation 205 North Michigan Avenue, Suite 2930 Chicago IL 60601 USA
| | - Niles J. Gunsalus
- The Scripps Energy and Materials Center Department of Chemistry The Scripps Research Institute Jupiter FL 33458 USA
| | - Clinton R. King
- Department of Chemistry and Biochemistry Brigham Young University (BYU) Provo UT 84602 USA
| | - Michael M. Konnick
- Hyconix Incorporation 205 North Michigan Avenue, Suite 2930 Chicago IL 60601 USA
| | - Daniel H. Ess
- Department of Chemistry and Biochemistry Brigham Young University (BYU) Provo UT 84602 USA
| | - Roy A. Periana
- The Scripps Energy and Materials Center Department of Chemistry The Scripps Research Institute Jupiter FL 33458 USA
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Ivanov SD, Witt A, Marx D. Theoretical spectroscopy using molecular dynamics: theory and application to CH5+ and its isotopologues. Phys Chem Chem Phys 2013; 15:10270-99. [DOI: 10.1039/c3cp44523b] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Dinér P. Superacid-Promoted Ionization of Alkanes Without Carbonium Ion Formation: A Density Functional Theory Study. J Phys Chem A 2012; 116:9979-84. [DOI: 10.1021/jp306319s] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Peter Dinér
- Department of Chemistry—BMC, Uppsala University, Box 576, S-751 23 Uppsala, Sweden
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Sophy KB, Kuo JL. Structure and vibrational spectra of H+(HF)n (n=2–9) clusters: An ab initio study. J Chem Phys 2009; 131:224307. [DOI: 10.1063/1.3268502] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022] Open
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8
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Olesen SG, Hammerum S. Hydrogen Bonding to Alkanes: Computational Evidence. J Phys Chem A 2009; 113:7940-4. [DOI: 10.1021/jp9030392] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Solveig Gaarn Olesen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Steen Hammerum
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
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Tanarro I, Herrero VJ, Islyaikin AM, Méndez I, Tabarés FL, Tafalla D. Ion Chemistry in Cold Plasmas of H2 with CH4 and N2. J Phys Chem A 2007; 111:9003-12. [PMID: 17722894 DOI: 10.1021/jp073569w] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The distributions of ions and neutrals in low-pressure (approximately 10(-2) mbar) DC discharges of pure hydrogen and hydrogen with small admixtures (5%) of CH(4) and N(2) have been determined by mass spectrometry. Besides the mentioned plasma precursors, appreciable amounts of NH(3) and C(2)H(x) hydrocarbons, probably mostly from wall reactions, are detected in the gas phase. Primary ions, formed by electron impact in the glow region, undergo a series of charge transfer and reactive collisions that determine the ultimate ion distribution in the various plasmas. A comparison of the ion mass spectra for the different mixtures, taking into account the mass spectra of neutrals, provides interesting information on the key reactions among ions. The prevalent ion is H3+ in all cases, and the ion chemistry is dominated by protonation reactions of this ion and some of its derivatives. Besides the purely hydrogenic ions, N(2)H+, NH(4)+, and CH(5)+ are found in significant amounts. The only mixed C/N ion clearly identified is protonated acetonitrile C(2)H(4)N+. The results suggest that very little HCN is formed in the plasmas under study.
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Affiliation(s)
- I Tanarro
- Instituto de Estructura de la Materia, CSIC, Serrano 123, 28006 Madrid, Spain. itanarro@ iem.cfmac.csic.es
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Akhrem I, Orlinkov A. Polyhalomethanes Combined with Lewis Acids in Alkane Chemistry. Chem Rev 2007; 107:2037-79. [PMID: 17488061 DOI: 10.1021/cr970005n] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Irena Akhrem
- A.N.Nesmeyanov Institute of Organoelement Compounds, Russian Academy of Sciences, 28 Vavilova Street, 117813 Moscow, Russia.
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12
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Walspurger S, Sun Y, Souna Sido AS, Sommer J. Neopentane and Solid Acids: Direct Hydron Exchange before Cracking. J Phys Chem B 2006; 110:18368-73. [PMID: 16970460 DOI: 10.1021/jp0621676] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The hydrogen/deuterium exchange reaction of 2,2-dimethylpropane (neopentane) over D(2)O-exchanged zeolites (MOR, FAU, BEA, MFI) using a batch recirculation reactor was studied by means of gas chromatography coupled with mass spectrometer. In the temperature range 473-573 K, H/D exchange proceeds without side reaction such as cracking at short contact times. Indeed the C-H bond has appeared favorably involved in the activation of neopentane compared to the less accessible C-C bond. The transition state allowing hydron exchange is most likely a carbonium species (pentacoordinated carbon) as in the case of the H/D exchange between methane and solid acid. The activation energies of the H/D exchange between neopentane and zeolites are the same for all zeolites indicating a common carbonium ion type transition state. On the basis of previous results in the case of the exchange between methane and liquid superacids, the deuterium exchange rates in neopentane were tentatively related to the acidity of the solids. However the order of activity MOR > MFI > BEA > FAU seems to be related to the size of the pores, which may suggest the involvement of a confinement effect in the zeolites cavities. Moreover we found that H/D exchange takes also place between neopentane and deuterated sulfated zirconia (SZ) emphasizing its strong acidity.
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Affiliation(s)
- Stéphane Walspurger
- Laboratoire de Physicochimie des Hydrocarbures, UMR 7513, Faculté de Chimie, Université Louis Pasteur, 4 rue Blaise Pascal, 67000 Strasbourg, France.
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Kumar P P, Marx D. Understanding hydrogen scrambling and infrared spectrum of bare CH5+based on ab initio simulations. Phys Chem Chem Phys 2006; 8:573-86. [PMID: 16482299 DOI: 10.1039/b513089c] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
A comprehensive study of the properties of protonated methane obtained from ab initio molecular dynamics simulations is presented. Comparing computed infrared spectra to the measured one gives further support to the high fluxionality of bare CH(5)(+). The computational trick to partially freezing out large-amplitude motion, in particular hydrogen scrambling and internal rotation of the H(2) moiety, leads to an understanding of the measured IR spectrum despite the underlying rapid hydrogen scrambling motion that interconverts dynamically structures of different symmetry and chemical bonding pattern. In particular, the fact that C-H stretching modes involving the carbon nucleus and those protons that form the H(2) moiety and the CH(3) tripod, respectively, result in distinct peaks is arguably experimental support for three-center two-electron bonding being operative at experimental conditions. It is proposed that hydrogen scrambling is associated with the softening of a mode that involves the bending of the H(2) moiety relative to the CH(3) tripod, which characterizes the C(s) ground-state structure. The potential energy surface that is mapped on to a two dimensional subspace of internal coordinates provides insight into the dynamical mechanism for exchange of hydrogens between CH(3) tripod and the three-center bonded H(2) moiety that eventually leads to full hydrogen scrambling.
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Affiliation(s)
- Padma Kumar P
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, Germany
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Walspurger S, Goeppert A, Haouas M, Sommer J. H/D isotope exchange between methane and magic acid (HSO3F–SbF5): an in situ NMR study. NEW J CHEM 2004. [DOI: 10.1039/b309362j] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Schreiner PR, Fokin AA. Selective alkane C?H-bond functionalizations utilizing oxidative single-electron transfer and organocatalysis. CHEM REC 2004; 3:247-57. [PMID: 14762825 DOI: 10.1002/tcr.10070] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
Alkane C-H-bond functionalization methods not utilizing metal-catalysis are discussed based on experimental and computational data, beginning with molecule-induced homolysis (reactions of alkanes with dioxiranes). Electrophilic reactions are elaborated next with an emphasis on mechanistic details that reveal that many so-called electrophilic C-H or C-C-bond insertions can be rationalized by electron-transfer reactions (inner sphere, H-coupled, and outer sphere). Finally, radical functionalizations utilizing carbon-centered (relatively stable) radicals generated under organocatalytic (phase-transfer catalysis, PTC) conditions are presented as valuable alternatives to other radical-chain alkane functionalizations. The remarkable chemo- and regioselectivities of these PTC radical reactions and the tolerance of high strain in certain aliphatic hydrocarbons make them particularly useful for laboratory-scale halogenations, in particular, iodinations of unactivated alkane C-H-bonds.
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Affiliation(s)
- Peter R Schreiner
- Institut für Organische Chemie, Justus-Liebig-University, Heinrich-Buff-Ring 58, D-35392 Giessen, Germany.
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Hunter KC, Seitz C, East ALL. A Mechanistic Study of the Brønsted-Acid Catalysis of n-Hexane → Propane + Propene, Featuring Carbonium Ions. J Phys Chem A 2002. [DOI: 10.1021/jp021881u] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ken C. Hunter
- Department of Chemistry and Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
| | - Christa Seitz
- Department of Chemistry and Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
| | - Allan L. L. East
- Department of Chemistry and Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
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17
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Raugei S, Klein ML. Hydrocarbon Reactivity in the Superacid SbF5/HF: an ab Initio Molecular Dynamics Study. J Phys Chem B 2002. [DOI: 10.1021/jp026395l] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Simone Raugei
- International School for Advanced Studies (SISSA/ISAS), via Beirut 4, 34014 Trieste, Italy, and Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
| | - Michael L. Klein
- International School for Advanced Studies (SISSA/ISAS), via Beirut 4, 34014 Trieste, Italy, and Center for Molecular Modeling and Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323
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Hunter KC, East ALL. Properties of C−C Bonds in n-Alkanes: Relevance to Cracking Mechanisms. J Phys Chem A 2002. [DOI: 10.1021/jp0129030] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ken C. Hunter
- Department of Chemistry and Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
| | - Allan L. L. East
- Department of Chemistry and Biochemistry, University of Regina, Regina, Saskatchewan S4S 0A2, Canada
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Goeppert A, Sommer J. H/D exchange, protolysis and oxidation of C3–C5alkanes in HF–SbF5. σ-Basicity vs. reactivity of C–H bonds. NEW J CHEM 2002. [DOI: 10.1039/b201437h] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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