Fluorescence sensing of ionic analytes in water: from transition metal ions to vitamin B13

The Strange Case of Orotic Acid: The Different Expression of Pyrimidines Biosynthesis in Healthy Males and Females

Orotic acid (OA) is an intermediate metabolite of pyrimidine nucleotide biosynthesis and represents a minor diet constituent. The measurement of urinary orotic acid is useful in confirming the diagnosis of hereditary metabolic diseases. Moreover, it could be of interest to know how the physiological concentration of this metabolite changes in relation to different conditions of clinical normality. The purpose of this study was to determine the orotic acid concentration in the urine of healthy patients, to observe normal oroticuria and to evaluate if the expression of pyrimidine intermediate biosynthesis differs between healthy males and females. The orotic acid concentration in urine was performed via the ICH M10-validated analytical method. Unexpectedly, females showed a greater oroticuria than males in pediatric age (0-10); conversely, we did not find significant differences until 70 years of age. The LC-MS/MS method was suitable for use in the differential diagnosis of hereditary metabolic disease and metabolic monitoring of anticancer drug-induced toxicity. The analytical protocol was found to be rapid and ideal, and was used in the routine analysis of a clinical chemistry laboratory. The biochemical aspects related to the expression of pyrimidine biosynthesis should be further investigated in light of the obtained results.

Structural characterization and bioimaging of Zn2+ using meta-benziporphodimethene analogue

"Prevention is better than cure, especially when something has no cure." Cancer, in most patients is detected at the stage beyond which it becomes non-curative. Thus, the early detection of cancer cells can play a crucial role in enhancing the chances of a patient's survival. In this light, we present a non-fluorescent receptor employed for the detection of Zn²⁺ ion in MDA-MB-231 carcinoma cells that exhibits fluorescence turn-on behaviour upon binding with the metal ion. In this work, the synthesis of 11,16-bis(2,6-difluorobenzene)-6,6,21,21-tetramethyl-meta-benziporpho-6,21-dimethene and its Zn²⁺ chloride complex have been reported. The compounds were fully characterized using UV-Visible, NMR, IR and mass spectrometry. Furthermore, the X-ray polymorphs of meta-benziporphodimethene analogue have been added. The study of its bioimaging applications in MDA-MB-231 breast cancer cells for the detection of Zn²⁺ ions have been reported.

Switching on the Fluorescence Emission of Polypyridine Ligands by Simultaneous Zinc(II) Binding and Protonation

The synthesis and characterization of the two new open-chain ligands 1,15-bis-[6-(2,2'-bipyridyl)]-2,5,8,11,14-pentaaza-octadecane (L1) and 1,15-bis-[2-(1,10-phenanthroline)-9-methyl]-2,5,8,11,14-pentaazaoctadecane (L2), both featuring a tetraethylenpentaamine chain linking via methylene bridges the 6 and 2 positions of two identical 2,2'-bipyridyl (bpy) and 9-methyl-1,10-phenanthroline (9-methyl-phen) moieties respectively, are reported. Their protonation and binding ability for Cu²⁺ , Zn²⁺ , Cd²⁺ and Pb²⁺ have been studied by coupling potentiometric titrations with UV-vis absorption and fluorescence emission measurements in water. L1 and L2 afford stable mono- and dinuclear complexes, in which the metal ion is bound by a single bpy or 9-methyl-phen unit and the amine groups on the aliphatic chain. However, L1 displays a greater binding ability for Cu²⁺ and Zn²⁺ with respect to L2, the stability constants of the [ML1]²⁺ complexes being 21.8 (Cu²⁺ ) and 19.4 (Zn²⁺ ) log units vs 20.34 and 16.8 log. units for the corresponding L2 species. Among all the metal ions tested, only the Zn²⁺ complex with L2 features an enhanced fluorescence emission at neutral pH, thanks to the simultaneous binding of one Zn²⁺ ion and H⁺ ion(s), that inhibits any possible photoinduced electron transfer (PET) process from the amine donors to the excited phen moiety. Binding of a second metal switches off the emission again.

G. S, Suvina V, Sakar M, Balakrishna RG. Perovskite nanomaterials as optical and electrochemical sensors

The perovskite family is comprised of a great number of members because of the possible and flexible substitution of numerous ions in its system.

Synthesis and Molecular Structure of a Head-to-Tail [4+4] Dimer of a Hexa-Substituted Anthracene

Two hexa-substituted anthracenes have been synthesised; the molecular structure of a [4+4] head-to-tail anthracene dimer has also been determined by X-ray diffraction analysis.

Recent Advances in Macrocyclic Fluorescent Probes for Ion Sensing

Small-molecule fluorescent probes play a myriad of important roles in chemical sensing. Many such systems incorporating a receptor component designed to recognise and bind a specific analyte, and a reporter or transducer component which signals the binding event with a change in fluorescence output have been developed. Fluorescent probes use a variety of mechanisms to transmit the binding event to the reporter unit, including photoinduced electron transfer (PET), charge transfer (CT), Förster resonance energy transfer (FRET), excimer formation, and aggregation induced emission (AIE) or aggregation caused quenching (ACQ). These systems respond to a wide array of potential analytes including protons, metal cations, anions, carbohydrates, and other biomolecules. This review surveys important new fluorescence-based probes for these and other analytes that have been reported over the past five years, focusing on the most widely exploited macrocyclic recognition components, those based on cyclam, calixarenes, cyclodextrins and crown ethers; other macrocyclic and non-macrocyclic receptors are also discussed.

Selective recognition of oxalate in water: effect of pH on binding strength and sensing mechanisms

New anthracene-containing azacryptands can selectively detect oxalate in a buffered aqueous solution at pH 6.2 showing a 10-fold fluorescence enhancement.

Understanding Stacking Interactions between an Aromatic Ring and Nucleobases in Aqueous Solution: Experimental and Theoretical Study

Stacking interactions between aromatic compounds and nucleobases are crucial in recognition of nucleotides and nucleic acids, but a comprehensive understanding of the strength and selectivity of these interactions in aqueous solution has been elusive. To this end, model complexes have been designed and analyzed by experiment and theory. For the first time, stacking free energies between five nucleobases and anthracene were determined experimentally from thermodynamic double mutant cycles. Three different experimental methods were proposed and evaluated. The dye prefers to bind nucleobases in the order (kcal/mol): G (1.3) > T (0.9) > U (0.8) > C (0.5) > A (0.3). The respective trend of interaction free energies extracted from DFT calculations correlates to that obtained experimentally. Analysis of the data suggests that stacking interactions dominate over hydrophobic effects in an aqueous solution and can be predicted with DFT calculations.

Tri-color emission and colorimetric recognition of acetate using semicarbazide and thio-semicarbazide derivatives: Experimental and computational studies

Two new fluorescence probes having semicarbazide (DSC) and thio-semicarbazide (DTSC) units have been derived upon reaction with 2-hydroxy-5-methylbenzene-1,3-dialdehyde. Both the probes show excellent selectivity for acetate ion in DMSO medium whereby DTSC generates tricolor emission. The association constants of DSC and DTSC for acetate are 6.6×10(4)M(-1) and 2×10(3)M(-1) respectively with corresponding detection limits, 1.06×10(-7)M and 2.5×10(-6)M. Density functional theoretical (DFT) studies nicely demonstrate the interaction between the DTSC and acetate ion.

A pyrene based Schiff base probe for selective fluorescence turn-on detection of Hg2+ ions with live cell application

A novel pyrene based free thiol containing a Schiff base derivative PT1 was synthesized and reported as a fluorescence turn-on sensor for Hg²⁺ ions, via CHEF and excimer (PT1-PT1*) formation with live cell imaging.

Synthesis, photophysical, electrochemical and laser properties of anthracene conjugated glycodendrimers with triazole as a bridging unit

Blue light emitting glycodendrimers 1, 2 and 3 were successfully synthesized by click reaction and the higher generation glycodendrimers showed enhanced optical, photophysical, laser and electrochemical properties.

Simple pyridyl-salicylimine-based fluorescence "turn-on" sensors for distinct detections of Zn2+, Al3+ and OH- ions in mixed aqueous media

Simple pyridyl-salicylimine derivatives (F1, F2 and F3) are reported for the first time as fluorescence "turn-on" sensors for distinct detections of Zn(2+), Al(3+) and OH(-) ions in mixed-aqueous media CH3CN/H2O with volume ratios of 6/4 and 3/7 (at pH = 7 and 25 °C) via internal charge transfer (ICT), chelation enhanced fluorescence (CHEF), and deprotonation mechanisms. F1 and F2 show diverse turn-on sensing applications to Zn(2+), Al(3+) and OH(-) ions, but F3 exhibited the fluorescence turn-on sensing to Al(3+) and OH(-) ions in CH3CN/H2O (6/4; vol/vol). F1+Zn(2+) and F2+Zn(2+) complexes revealed the reversibilities and ratiometric displacements of Zn(2+) with ethylene diamine tetra acetic acid (EDTA) and Al(3+) ions, respectively, in CH3CN/H2O (6/4; vol/vol). On the other hand, F1, F2 and F3 in CH3CN/H2O (3/7; vol/vol) showed sensitivities only to Al(3+) ions but negligible selectivities to OH(-) ions. Stoichiometry of all sensor complexes were calculated as 1 : 1 by job's plots based on UV/Vis and PL titrations. The complex formation and binding sites of all sensor materials were well characterized by (1)H, (13)C NMR, and mass (FAB) spectral analysis. Detection limits were calculated from standard deviations and linear fitting calculations. The association constant (log K(a)) values of sensor complexes were evaluated from the fluorescence binding isotherms. The fluorescence decay constant (τ) values were estimated from time resolved fluorescence studies. Time, temperature, pH and solvent concentration effects towards sensor responses were fully investigated in this report.

Colorimetric Recognition of Oxalate in Water by a New Carbazole-Zn(II) Based Chemosensing Ensemble

A chemosensing ensemble consisting of a carbazole-containing dinuclear zinc(II) complex and chromeazurol S displays colorimetric recognition of oxalate in water at pH 7.0. Upon addition of oxalate, the ensemble solution exhibits a naked eye detectable colour change from blue to yellow. The oxalate sensing process is hardly affected by other dicarboxylates; addition of dicarboxylates such as malonate, succinate, glutarate, adipate, phthalate, isophthalate and terephthalate does not induce significant colour changes.

Self-assembled arene-ruthenium-based rectangles for the selective sensing of multi-carboxylate anions

Novel arene-ruthenium [2+2] metalla-rectangles 4 and 5 have been synthesized by self-assembly using dipyridyl amide ligand 3 and arene-ruthenium acceptors (arene: benzoquinone (1), naphthacenedione (2)) and characterized by NMR spectroscopy and ESI-MS. The solid-state structure of 5 was determined by X-ray diffraction and shows encapsulated diethyl ether molecule in the rectangular cavity of 5. The luminescent 5 was further used for anion sensing with the amidic linkage serving as a hydrogen-bond donor site for anions and the ruthenium moiety serving as a signaling unit. A UV/Vis titration study demonstrated that although 5 interacts very weakly with common monoanions as well as with flexible dicarboxylate anions such as malonate and succinate, it displays significant binding affinity (K>10(3) in MeOH) for rigid multi-carboxylate anions such as oxalate, citrate, and tartrate, exhibiting a 1:1 stoichiometry. It has been suggested that 1:1 bidentate hydrogen bonding assisted by appropriate geometrical complementarity is mainly responsible for the increased affinity of 5 towards such anions. A fluorescence titration study revealed a large fluorescence enhancement of 5 upon binding to multi-carboxylate anions, which can be attributed to the blocking of the photoinduced electron-transfer process from the arene-Ru moiety to the amidic donor in 5 as a result of hydrogen bonding between the donor and the anion.

Differentiating between fluorescence-quenching metal ions with polyfluorophore sensors built on a DNA backbone

A common problem in detecting metal ions with fluorescentchemosensors is the emission-suppressing effects of fluorescence-quenching metal ions. This quenching tendency makes it difficult to design sensors with turn-on signal, and differentiate between several metal ions that may yield a strong quenching response. To address these challenges, we investigate a new sensor design strategy, incorporating fluorophores and metal ligands as DNA base replacements in DNA-like oligomers, for generating a broader range of responses for quenching metal ions. The modular molecular design enabled rapid synthesis and discovery of sensors from libraries on PEG-polystyrene beads. Using this approach, water-soluble sensors 1-5 were identified as strong responders to a set of eight typically quenching metal ions (Co(2+), Ni(2+), Cu(2+), Hg(2+), Pb(2+), Ag(+), Cr(3+), and Fe(3+)). They were synthesized and characterized for sensing responses in solution. Cross-screening with the full set of metal ions showed that they have a wide variety of responses, including emission enhancements and red- and blue-shifts. The diversity of sensor responses allows as few as two sensors (1 and 2) to be used together to successfully differentiate these eight metals. As a test, a set of unknown metal ion solutions in blind studies were also successfully identified based on the response pattern of the sensors. The modular nature of the sensor design strategy suggests a broadly applicable approach to finding sensors for differentiating many different cations by pattern-based recognition, simply by varying the sequence and composition of ligands and fluorophores on a DNA synthesizer.

Selective and sensitive “turn-on” fluorescent Zn2+ sensors based on di- and tripyrrins with readily modulated emission wavelengths

Di- and tripyrrin Zn²⁺ sensors exhibit CHEF-type fluorescence enhancement by factors up to 72, with tunable emission colours.

Chemomechanical Polymers as Sensors and Actuators for Biological and Medicinal Applications

Changes in the chemical environment can trigger large motions in chemomechanical polymers. The unique feature of such intelligent materials, mostly in the form of hydrogels, is therefore, that they serve as sensors and actuators at the same time, and do not require any measuring devices, transducers or power supplies. Until recently the most often used of these materials responded to changes in pH. Chemists are now increasingly using supramolecular recognition sites in materials, which are covalently bound to the polymer backbone. This allows one to use a nearly unlimited variety of guest (or effector) compounds in the environment for a selective response by automatically triggered size changes. This is illustrated with non-covalent interactions of effectors comprising of metal ions, isomeric organic compounds, including enantiomers, nucleotides, aminoacids, and peptides. Two different effector molecules can induce motions as functions of their concentration, thus representing a logical AND gate. This concept is particularly fruitful with effector compounds such as peptides, which only trigger size changes if, e.g. copper ions are present in the surroundings. Another principle relies on the fast formation of covalent bonds between an effector and the chemomechanical polymer. The most promising application is the selective interaction of covalently fixed boronic acid residues with glucose, which renders itself not only for sensing, but eventually also for delivery of drugs such as insulin. The speed of the responses can significantly increase by increasing the surface to volume ratio of the polymer particles. Of particular interest is the sensitivity increase which can be reached by downsizing the particle volume.

A Highly Fluorescent Anthracene-Containing Hybrid Material Exhibiting Tunable Blue–Green Emission Based on the Formation of an Unusual “T-Shaped” Excimer

A series of flexible bis(9-anthryldiamine) ligands (L1-L3) linked with alkyl spacers of different chain length was synthesized and characterized, in order to investigate the coordination behavior of these diamine ligands with metal ions (Zn2+, etc.) based on fluorescence measurements. The results showed that, in the case of anthryldiamine ligands bearing two- or four-carbon links, the zinc ion induced a chelation-enhanced fluorescence (CHEF) effect in aqueous media, while a trace amount of water could selectively quench the blue emission of the Zn(II) complex with a three-carbon-linked ligand (1). Meanwhile, the introduction of more water (concentration >11 %) resulted in the formation of a new green luminescent species; the luminescence intensity was enhanced stepwise to a maximum with addition of approximately 30 % water in THF solution. The peak position (centered at approximately 500 nm) and the lifetime measurement (tau=19.59 ns) indicated that the green luminescence was attributable to a novel edge-to-face dimeric conformation ("T-shaped" conformation) of anthracene, and not to the more common face-to-face dimeric conformation. Accordingly, 1H NMR spectroscopic studies in nonaqueous or aqueous solution confirmed this T-shaped conformation, which is consistent with the results of single-crystal X-ray structure analysis and solid-state photoluminescence studies.

Supramolecular Chemistry in Water

Supramolecular chemistry in water is a constantly growing research area because noncovalent interactions in aqueous media are important for obtaining a better understanding and control of the major processes in nature. This Review offers an overview of recent advances in the area of water-soluble synthetic receptors as well as self-assembly and molecular recognition in water, through consideration of the functionalities that are used to increase the water solubility, as well as the supramolecular interactions and approaches used for effective recognition of a guest and self-assembly in water. The special features and applications of supramolecular entities in aqueous media are also described.