1
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Song LC, Wang YP, Dong YX, Yang XY. Functionalized nickel(II)-iron(II) dithiolates as biomimetic models of [NiFe]-H 2ases. Dalton Trans 2023; 52:3755-3768. [PMID: 36857705 DOI: 10.1039/d3dt00039g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/16/2023]
Abstract
To develop the structural and functional modeling chemistry of [NiFe]-H2ases, a series of new biomimetics for the active site of [NiFe]-H2ases have been prepared by various synthetic methods. Treatment of the mononuclear Ni complex (pnp)NiCl2 (pnp = (Ph2PCH2)2NPh) with (dppv)Fe(CO)2(pdt) (dppv = 1,2-(Ph2P)2C2H2, pdt = 1,3-propanedithiolate) and KPF6 gave the dicarbonyl complex [(pnp)Ni(pdt)Fe(CO)2(dppv)](PF6)2 ([1](PF6)2). Further treatment of [1](PF6)2 and [(dppe)Ni(pdt)Fe(CO)2(dppv)](BF4)2 (dppe = 1,2-(Ph2P)2C2H4) with the decarbonylation agent Me3NO and pyridine afforded the novel sp3 C-Fe bond-containing complexes [(pnp)Ni(SCH2CH2CHS)Fe(CO)(dppv)]PF6 ([2]PF6) and [(dppe)Ni(SCH2CH2CHS)Fe(CO)(dppv)]BF4 ([3]BF4). More interestingly, the first t-carboxylato complexes [(pnp)Ni(pdt)Fe(CO)(t-O2CR)(dppv)]PF6 ([4]PF6, R = H; [5]PF6, R = Me; [6]PF6, R = Ph) could be prepared by reactions of [1]PF6 with the corresponding carboxylic acids RCO2H in the presence of Me3NO, whereas further reactions of [4]PF6-[6]PF6 with aqueous HPF6 and 1.5 MPa H2 gave rise to the μ-hydride complex [(pnp)Ni(pdt)Fe(CO)(μ-H)(dppv)]PF6 ([7]PF6). Except for H2 activation by t-carboxylato complexes [4]PF6-[6]PF6 to give a μ-hydride complex ([7]PF6), the sp3 C-Fe bond-containing complex [2]PF6 was found to be a catalyst for proton reduction to H2 under CV conditions. Furthermore, the chemical reactivity of the μ-hydride complex [7]PF6 displayed in the e- transfer reaction with FcPF6 in the presence of CO, the H2 evolution reaction with the protonic acid HCl, and the H- transfer reaction with N-methylacridinium hexafluorophosphate ([NMA]PF6) was systematically studied. As a result, a series of the expected products such as H2, ferrocene, the dicarbonyl complex [1](PF6)2, the μ-chloro complex [(pnp)Ni(pdt)Fe(CO)(μ-Cl)(dppv)]PF6 ([8]PF6), the t-MeCN-coordinated complex [(pnp)Ni(pdt)Fe(CO)(t-MeCN)(dppv)](PF6)2 ([9](PF6)2) and the H- transfer product AcrH2 were produced. While all the newly prepared model complexes were structurally characterized by spectroscopic methods, the molecular structures of some of their representatives were confirmed by X-ray crystallography.
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Affiliation(s)
- Li-Cheng Song
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
| | - Yin-Peng Wang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
| | - Yi-Xiong Dong
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
| | - Xi-Yue Yang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China.
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2
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Synthesis, Structures and Chemical Reactivity of Dithiolato-Bridged Ni-Fe Complexes as Biomimetics for the Active Site of [NiFe]-Hydrogenases. INORGANICS 2022. [DOI: 10.3390/inorganics10070090] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
To develop the structural and functional modeling chemistry of [NiFe]-H2ases, we have carried out a study regarding the synthesis, structural characterization and reactivity of a new series of [NiFe]-H2ase model complexes. Thus, treatment of diphosphine dppb-chelated Ni complex (dppb)NiCl2 (dppb = 1,2-(Ph2P)2C6H4) with (dppv)Fe(CO)2(pdt) (dppv = 1,2-(Ph2P)2C2H2, pdt = 1,3-propanedithiolate) and NaBF4 gave dicarbonyl complex [(dppb)Ni(pdt)Fe(CO)2(dppv)](BF4)2 ([A](BF4)2). Further treatment of [A](BF4)2 with Me3NO and Bu4NCN or KSCN afforded t-cyanido and t-isothiocyanato complexes [(dppb)Ni(pdt)Fe(CO)(t-R)(dppv)]BF4 ([1]BF4, R = CN; [2]BF4, R = NCS), respectively. While azadiphosphine MeN(CH2PPh2)2-chelated t-hydride complex [MeN(CH2PPh2)2Ni(pdt)Fe(CO)(t-H)(dppv)]BF4 ([3]BF4) was prepared by treatment of dicarbonyl complex [MeN(CH2PPh2)2Ni(pdt)Fe(CO)2(dppv)](BF4)2 ([B](BF4)2) with Me3NO and 1.5 MPa of H2, treatment of dicarbonyl complex [B](BF4)2 with Me3NO (without H2) in pyridine resulted in formation of a novel monocarbonyl complex [MeN(CH2PPh2)2Ni(SCHCH2CH2S)Fe(CO)(dppv)]BF4 ([4]BF4) via the unexpected sp3 C-H bond activation reaction. Furthermore, azadiphosphine PhN(CH2PPh2)2-chelated µ-mercapto complex [PhN(CH2PPh2)2Ni(pdt)Fe(CO)(µ-SH)(dppv)]BF4 ([5]BF4) was prepared by treatment of dicarbonyl complex [PhN(CH2PPh2)2Ni(pdt)Fe(CO)2(dppv)](BF4)2 ([C](BF4)2) with Me3NO and H2S gas, whereas treatment of azadiphosphine Ph2CHN(CH2PPh2)2-chelated dicarbonyl complex [Ph2CHN(CH2PPh2)2Ni(pdt)Fe(CO)2(dppe)](BF4)2 ([D](BF4)2, dppe = 1,2-(Ph2P)2C2H4) with Me3NO⋅2H2O gave rise to µ-hydroxo complex [Ph2CHN(CH2PPh2)2Ni(pdt)Fe(CO)(µ-OH)(dppe)]BF4 ([6]BF4). All the possible pathways for formation of the new model complexes are briefly discussed, and their structures were fully characterized by various spectroscopic techniques and for six of them by X-ray crystallography.
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3
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Murueta‐Cruz BA, Berlanga‐Vázquez A, Martínez‐Otero D, Benitez LN, Castillo I, Mondragón‐Díaz A. Planar or Bent? Redox Modulation of Hydrogenase Bimetallic Models by the [Ni
2
(μ‐SAr)
2
] Core Conformation. Eur J Inorg Chem 2021. [DOI: 10.1002/ejic.202100105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Brenda A. Murueta‐Cruz
- Departamento de Química Facultad de Ciencias Universidad del Valle Ciudad Universitaria Meléndez Calle 13 # 100-00 Cali Colombia
| | - Armando Berlanga‐Vázquez
- Instituto de Química Universidad Nacional Autónoma de México Ciudad Universitaria 04510 Ciudad de México México
| | - Diego Martínez‐Otero
- Centro Conjunto de Investigación en Química Sustentable UAEM-UNAM Carretera Toluca-Atlacomulco km 14.5 Toluca 50200 Estado de México México
| | - Luis Norberto Benitez
- Departamento de Química Facultad de Ciencias Universidad del Valle Ciudad Universitaria Meléndez Calle 13 # 100-00 Cali Colombia
| | - Ivan Castillo
- Instituto de Química Universidad Nacional Autónoma de México Ciudad Universitaria 04510 Ciudad de México México
| | - Alexander Mondragón‐Díaz
- Departamento de Química Facultad de Ciencias Universidad del Valle Ciudad Universitaria Meléndez Calle 13 # 100-00 Cali Colombia
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4
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Song LC, Feng L, Lu Y, Yang XY. Synthesis, Structures, and Reactivity of [NiFe]-H 2ase Mimics Containing One Square-Planar N 2S 2 Ligand Bridged between Their Ni/Fe Centers through One or Two S Atoms. Organometallics 2021. [DOI: 10.1021/acs.organomet.0c00778] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Li-Cheng Song
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, China
| | - Li Feng
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Yu Lu
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Xi-Yue Yang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
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5
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Song LC, Zhang ZQ, Gu ZC, Jiang KY. Cysteine residue-bridged dinuclear Ni–Fe complexes related to [NiFe]-H 2ases. NEW J CHEM 2021. [DOI: 10.1039/d1nj03872a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Cysteine residue-containing [NiFe]-H2ase models 1–6 have been prepared for the first time and some of them were found to be catalysts for H2 production from HOAc under CV conditions.
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Affiliation(s)
- Li-Cheng Song
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Zhen-Qing Zhang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Zhen-Chao Gu
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Kai-Yu Jiang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
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6
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Song LC, Liu BB, Liu WB, Tan ZL. Heterodinuclear nickel(ii)-iron(ii) azadithiolates as structural and functional models for the active site of [NiFe]-hydrogenases. RSC Adv 2020; 10:32069-32077. [PMID: 35518169 PMCID: PMC9056516 DOI: 10.1039/d0ra04344c] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Accepted: 08/20/2020] [Indexed: 11/30/2022] Open
Abstract
To develop the biomimetic chemistry of [NiFe]-H2ases, the first azadithiolato-bridged NiFe model complexes [CpNi{(μ-SCH2)2NR}Fe(CO)(diphos)]BF4 (5, R = Ph, diphos = dppv; 6, 4-ClC6H4, dppv; 7, 4-MeC6H4, dppv; 8, CO2CH2Ph, dppe; 9, H, dppe) have been synthesized via well-designed synthetic routes. Thus, treatment of RN[CH2S(O)CMe]2 with t-BuONa followed by reaction of the resulting intermediates RN(CH2SNa)2 with (dppv)Fe(CO)2Cl2 or (dppe)Fe(CO)2Cl2 gave the N-substituted azadithiolato-chelated Fe complexes [RN(CH2S)2]Fe(CO)2(diphos) (1, R = Ph, diphos = dppv; 2, 4-ClC6H4, dppv; 3, 4-MeC6H4, dppv; 4, CO2CH2Ph, dppe). Further treatment of 1–4 with nickelocene in the presence of HBF4·Et2O afforded the corresponding N-substituted azadithiolato-bridged NiFe model complexes 5–8, while treatment of 8 with HBF4·Et2O resulted in formation of the parent azadithiolato-bridged model complex 9. While all the new complexes 1–9 were characterized by elemental analysis and spectroscopy, the molecular structures of model complexes 6–8 were confirmed by X-ray crystallographic study. In addition, model complexes 7 and 9 were found to be catalysts for H2 production with moderate icat/ip and overpotential values from TFA under CV conditions. The first azadithiolato-bridged NiFe model complexes with a general formula [CpNi{(μ-SCH2)2NR}Fe(CO)(diphos)]BF4 have been synthesized, characterized, and for some of them found to be catalysts for proton reduction to H2 under CV conditions.![]()
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Affiliation(s)
- Li-Cheng Song
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University Tianjin 300071 China .,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin) Tianjin 300072 China
| | - Bei-Bei Liu
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University Tianjin 300071 China
| | - Wen-Bo Liu
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University Tianjin 300071 China
| | - Zheng-Lei Tan
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University Tianjin 300071 China
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7
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Song LC, Chen W, Feng L. Two heterodinuclear NiFe-based sulfenate complexes mimicking an S-oxygenated intermediate of an O 2-tolerant [NiFe]-H 2ase: synthesis, structures, and reactivity. NEW J CHEM 2020. [DOI: 10.1039/d0nj02586k] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Two biomimetic models for an O2-tolerant [NiFe]-H2ase are successfully prepared by reactions of sulfenate complex 2 with Fe2(CO)9 and CpFe(CO)2BF4.
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Affiliation(s)
- Li-Cheng Song
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University
- Tianjin 300071
- China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin)
- Tianjin 300072
| | - Wei Chen
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University
- Tianjin 300071
- China
| | - Li Feng
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University
- Tianjin 300071
- China
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8
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Song LC, Zhang LD, Zhang WW, Liu BB. Heterodinuclear Ni/M (M = Mo, W) Complexes Relevant to the Active Site of [NiFe]-Hydrogenases: Synthesis, Characterization, and Electrocatalytic H 2 Evolution. Organometallics 2018. [DOI: 10.1021/acs.organomet.8b00228] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Li-Cheng Song
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, China
| | - Long-Duo Zhang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Wei-Wei Zhang
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
| | - Bei-Bei Liu
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, College of Chemistry, Nankai University, Tianjin 300071, China
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9
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Song LC, Gao XY, Liu WB, Zhang HT, Cao M. Synthesis, Characterization, and Reactions of Functionalized Nickel–Iron Dithiolates Related to the Active Site of [NiFe]-Hydrogenases. Organometallics 2018. [DOI: 10.1021/acs.organomet.8b00050] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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10
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Song LC, Han XF, Chen W, Li JP, Wang XY. Dithiolato- and halogenido-bridged nickel–iron complexes related to the active site of [NiFe]-H2ases: preparation, structures, and electrocatalytic H2 production. Dalton Trans 2017; 46:10003-10013. [DOI: 10.1039/c7dt02203d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new series of [NiFe]-H2ase mimics (5a,b–7a,b) has been prepared and structurally characterized; particularly, they have been found to be pre-catalysts for H2 production from Cl2CHCO2H under CV conditions.
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Affiliation(s)
- Li-Cheng Song
- Department of Chemistry
- State Key Laboratory of Elemento-Organic Chemistry
- College of Chemistry
- Nankai University
- Tianjin 300071
| | - Xiao-Feng Han
- Department of Chemistry
- State Key Laboratory of Elemento-Organic Chemistry
- College of Chemistry
- Nankai University
- Tianjin 300071
| | - Wei Chen
- Department of Chemistry
- State Key Laboratory of Elemento-Organic Chemistry
- College of Chemistry
- Nankai University
- Tianjin 300071
| | - Jia-Peng Li
- Department of Chemistry
- State Key Laboratory of Elemento-Organic Chemistry
- College of Chemistry
- Nankai University
- Tianjin 300071
| | - Xu-Yong Wang
- Department of Chemistry
- State Key Laboratory of Elemento-Organic Chemistry
- College of Chemistry
- Nankai University
- Tianjin 300071
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11
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Song LC, Lu Y, Cao M, Yang XY. Reactions of dinuclear Ni 2complexes [Ni(RN PyS 4)] 2(RN PyS 4= 2,6-bis(2-mercaptophenylthiomethyl)-4-R-pyridine) with Fe(CO) 3(BDA) (BDA = benzylidene acetone) leading to heterodinuclear NiFe and mononuclear Fe complexes related to the active sites of [NiFe]- and [Fe]-hydrogenases. RSC Adv 2016. [DOI: 10.1039/c6ra07488j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
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12
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Yang D, Li Y, Su L, Wang B, Qu J. Versatile Reactivity of CH3CN-Coordinated Nickel-Iron Heterodimetallic Complexes with Cp* Ligand on Diazadithiolate (N2S2) or Dithiadithiolate (S4) Platforms. Eur J Inorg Chem 2015. [DOI: 10.1002/ejic.201500304] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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13
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Song LC, Cao M, Wang YX. Novel reactions of homodinuclear Ni2 complexes [Ni(RNPyS4)]2 with Fe3(CO)12 to give heterotrinuclear NiFe2 and mononuclear Fe complexes relevant to [NiFe]- and [Fe]-hydrogenases. Dalton Trans 2015; 44:6797-808. [PMID: 25747808 DOI: 10.1039/c5dt00067j] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The homodinuclear complexes [Ni(RNPyS4)]2 (; RNPyS4 = 2,6-bis(2-mercaptophenylthiomethyl)-4-R-pyridine; R = H, MeO, Cl, Br, i-Pr) were found to be prepared by reactions of the in situ generated Li2[Ni(1,2-S2C6H4)2] with 2,6-bis[(tosyloxy)methyl]pyridine and its substituted derivatives 2,6-bis[(tosyloxy)methyl]-4-R-pyridine. Further reactions of with Fe3(CO)12 gave both heterotrinuclear complexes NiFe2(RNPyS4)(CO)5 () and mononuclear complexes Fe(RNPyS4)(CO) (), unexpectedly. Interestingly, complexes and could be regarded as models for the active sites of [NiFe]- and [Fe]-hydrogenases, respectively. All the prepared complexes were characterized by elemental analysis, spectroscopy, and particularly for some of them, by X-ray crystallography. In addition, the electrochemical properties of and as well as the electrocatalytic H2 production catalyzed by and were investigated by CV techniques.
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Affiliation(s)
- Li-Cheng Song
- Department of Chemistry, State Key Laboratory of Elemento-Organic Chemistry, Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Nankai University, Tianjin 300071, China.
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14
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Song LC, Tan H, Luo FX, Wang YX, Ma Z, Niu Z. Synthesis, Structural Characterization, and Catalytic H2 Production of Ferrocenyl (Fc) Group Containing Complexes [Ni(PFc2NAr2)2](BF4)2 (Ar = Ph, p-BrC6H4). Organometallics 2014. [DOI: 10.1021/om500571n] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Li-Cheng Song
- Department of Chemistry,
State Key Laboratory of Elemento-Organic Chemistry, Nankai University, 94
Weijin Road, Tianjin 300071, People’s Republic of China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, People’s Republic of China
| | - Hao Tan
- Department of Chemistry,
State Key Laboratory of Elemento-Organic Chemistry, Nankai University, 94
Weijin Road, Tianjin 300071, People’s Republic of China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, People’s Republic of China
| | - Fei-Xian Luo
- Department of Chemistry,
State Key Laboratory of Elemento-Organic Chemistry, Nankai University, 94
Weijin Road, Tianjin 300071, People’s Republic of China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, People’s Republic of China
| | - Yong-Xiang Wang
- Department of Chemistry,
State Key Laboratory of Elemento-Organic Chemistry, Nankai University, 94
Weijin Road, Tianjin 300071, People’s Republic of China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, People’s Republic of China
| | - Zhen Ma
- Department of Chemistry,
State Key Laboratory of Elemento-Organic Chemistry, Nankai University, 94
Weijin Road, Tianjin 300071, People’s Republic of China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, People’s Republic of China
| | - Zheng Niu
- Department of Chemistry,
State Key Laboratory of Elemento-Organic Chemistry, Nankai University, 94
Weijin Road, Tianjin 300071, People’s Republic of China
- Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin 300072, People’s Republic of China
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15
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Song LC, Sun XJ, Jia GJ, Wang MM, Song HB. Synthesis, structural characterization, and electrochemical properties of (diphosphine)Ni-bridged butterfly Fe2E2 (E = S, Se, Te) cluster complexes related to [NiFe]-hydrogenases. J Organomet Chem 2014. [DOI: 10.1016/j.jorganchem.2014.03.004] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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16
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Weber K, Erdem ÖF, Bill E, Weyhermüller T, Lubitz W. Modeling the Active Site of [NiFe] Hydrogenases and the [NiFeu] Subsite of the C-Cluster of Carbon Monoxide Dehydrogenases: Low-Spin Iron(II) Versus High-Spin Iron(II). Inorg Chem 2014; 53:6329-37. [DOI: 10.1021/ic500910z] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
- Katharina Weber
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Özlen F. Erdem
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Eckhard Bill
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Thomas Weyhermüller
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
| | - Wolfgang Lubitz
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim an der Ruhr, Germany
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17
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Ogo S. H2and O2Activation-A Remarkable Insight into Hydrogenase. CHEM REC 2014; 14:397-409. [DOI: 10.1002/tcr.201402010] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/27/2014] [Indexed: 12/15/2022]
Affiliation(s)
- Seiji Ogo
- International Institute for Carbon-Neutral Energy Research (WPI-I2CNER); Kyushu University; 744 Moto-oka, Nishi-ku Fukuoka 819-0395 Japan
- Department of Chemistry and Biochemistry; Graduate School of Engineering; Kyushu University; 744 Moto-oka, Nishi-ku Fukuoka 819-0395 Japan
- Core Research for Evolutional Science and Technology (CREST); Japan Science and Technology Agency (JST); Kawaguchi Center Building; 4-1-8 Honcho Kawaguchi-shi Saitama 332-0012 Japan
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18
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Ohki Y. Synthetic Analogues of the Active Sites of Nitrogenase and [NiFe] Hydrogenase. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2014. [DOI: 10.1246/bcsj.20130207] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Yasuhiro Ohki
- Department of Chemistry, Graduate School of Science, Nagoya University
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19
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Song LC, Li JP, Xie ZJ, Song HB. Synthesis, Structural Characterization, and Electrochemical Properties of Dinuclear Ni/Mn Model Complexes for the Active Site of [NiFe]-Hydrogenases. Inorg Chem 2013; 52:11618-26. [DOI: 10.1021/ic401978h] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Li-Cheng Song
- Department of Chemistry,
State Key Laboratory
of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Jia-Peng Li
- Department of Chemistry,
State Key Laboratory
of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Zhao-Jun Xie
- Department of Chemistry,
State Key Laboratory
of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
| | - Hai-Bin Song
- Department of Chemistry,
State Key Laboratory
of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China
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20
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Jugder BE, Welch J, Aguey-Zinsou KF, Marquis CP. Fundamentals and electrochemical applications of [Ni–Fe]-uptake hydrogenases. RSC Adv 2013. [DOI: 10.1039/c3ra22668a] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
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21
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Weber K, Krämer T, Shafaat HS, Weyhermüller T, Bill E, van Gastel M, Neese F, Lubitz W. A Functional [NiFe]-Hydrogenase Model Compound That Undergoes Biologically Relevant Reversible Thiolate Protonation. J Am Chem Soc 2012. [DOI: 10.1021/ja309563p] [Citation(s) in RCA: 96] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Katharina Weber
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
| | - Tobias Krämer
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
| | - Hannah S. Shafaat
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
| | - Thomas Weyhermüller
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
| | - Eckhard Bill
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
| | - Maurice van Gastel
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
| | - Frank Neese
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
| | - Wolfgang Lubitz
- Max Planck Institute for Chemical Energy Conversion, Stiftstrasse 34-36, D-45470 Mülheim
an der Ruhr, Germany
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22
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Song LC, Sun XJ, Zhao PH, Li JP, Song HB. Synthesis, characterization and some properties of mononuclear Ni and trinuclear NiFe2 complexes related to the active site of [NiFe]-hydrogenases. Dalton Trans 2012; 41:8941-50. [DOI: 10.1039/c2dt30609c] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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23
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Fontecave M, Artero V. Bioinspired catalysis at the crossroads between biology and chemistry: A remarkable example of an electrocatalytic material mimicking hydrogenases. CR CHIM 2011. [DOI: 10.1016/j.crci.2010.01.013] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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24
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Lozan V. Stabilization of Unusual Substrate Coordination Modes in Dinuclear Macrocyclic Complexes. CHEMISTRY JOURNAL OF MOLDOVA 2010. [DOI: 10.19261/cjm.2010.05(1).02] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022] Open
Abstract
The steric protection offered by the macrobinucleating hexaazaditiophenolateligand (L) allows for the preparation of the first stable dinuclear nickel(II) borohydride bridged complex, which reacts rapidly with elemental sulphur producing a tetranuclear nickel(II) complex [{(L)Ni2}2(μ-S6)]2+ bearing a helical μ4-hexa- sulfide ligand. The [(L)CoII 2]2+ fragment have been able to trap a monomethyl orthomolybdate in the binding pocket. Unusual coordination modes of substrate in dinuclear macrocyclic compounds was demonstrated.
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25
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Zheng C, Kim K, Matsumoto T, Ogo S. The useful properties of H2O as a ligand of a hydrogenase mimic. Dalton Trans 2010; 39:2218-25. [PMID: 20162194 DOI: 10.1039/b921273f] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This paper investigates the required properties of Ru-coordinated ligands of a Ni-Ru based hydrogenase mimic. A series of ligands, including MeCN, pyridine, H(2)O and OH(-) were coordinated to Ru, with H(2)O being the only ligand to promote H(2)-activation. In addition, a tethered pyridyl moiety was synthesised and found to completely inhibit H(2)-activation. We conclude, therefore, that H(2)O is the ideal ligand for this mimic as a result of both its mild basicity and the availability of two lone pairs for simultaneous binding to Ru and H(2).
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Affiliation(s)
- Chunbai Zheng
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 744 Moto-oka, Nishi-ku, Fukuoka 819-0395, Japan
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26
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Ohki Y, Yasumura K, Ando M, Shimokata S, Tatsumi K. A model for the CO-inhibited form of [NiFe] hydrogenase: synthesis of CO3Fe(micro-StBu)3Ni{SC6H3-2,6-(mesityl)2} and reversible CO addition at the Ni site. Proc Natl Acad Sci U S A 2010; 107:3994-7. [PMID: 20147622 PMCID: PMC2840173 DOI: 10.1073/pnas.0913399107] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
A [NiFe] hydrogenase model compound having a distorted trigonal-pyramidal nickel center, (CO)(3)Fe(micro-S(t)Bu)(3)Ni(SDmp), 1 (Dmp = C(6)H(3)-2,6-(mesityl)(2)), was synthesized from the reaction of the tetranuclear Fe-Ni-Ni-Fe complex [(CO)(3)Fe(micro-S(t)Bu)(3)Ni](2)(micro-Br)(2), 2 with NaSDmp at -40 degrees C. The nickel site of complex 1 was found to add CO or CN(t)Bu at -40 degrees C to give (CO)(3)Fe(S(t)Bu)(micro-S(t)Bu)(2)Ni(CO)(SDmp), 3, or (CO)(3)Fe(S(t)Bu)(micro-S(t)Bu)(2)Ni(CN(t)Bu)(SDmp), 4, respectively. One of the CO bands of 3, appearing at 2055 cm(-1) in the infrared spectrum, was assigned as the Ni-CO band, and this frequency is comparable to those observed for the CO-inhibited forms of [NiFe] hydrogenase. Like the CO-inhibited forms of [NiFe] hydrogenase, the coordination of CO at the nickel site of 1 is reversible, while the CN(t)Bu adduct 4 is more robust.
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Affiliation(s)
- Yasuhiro Ohki
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Kazunari Yasumura
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Masaru Ando
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Satoko Shimokata
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Kazuyuki Tatsumi
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
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27
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Pal S, Ohki Y, Yoshikawa T, Kuge K, Tatsumi K. Dithiolate-bridged Fe-Ni-Fe trinuclear complexes consisting of Fe(CO)(3-n)(CN)(n) (n = 0, 1) components relevant to the active site of [NiFe] hydrogenase. Chem Asian J 2009; 4:961-968. [PMID: 19130447 DOI: 10.1002/asia.200800434] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
A dithiolate-bridged Fe-Ni-Fe trinuclear carbonyl complex [(CO)(3)Fe(mu-ndt)Ni(mu-ndt)Fe(CO)(3)] (1, ndt = norbornane-exo-2,3-dithiolate) has been synthesized from the reaction of [Fe(CO)(4)I(2)] and Li(2)[Ni(ndt)(2)]. This reaction was found to occur with concomitant formation of a tetranuclear cluster [Ni(3)(mu-ndt)(4)FeI] (2). Treatment of 1 with Na[N(SiMe(3))(2)] transforms some of the CO ligands into CN(-), and the monocyanide complex (PPh(4))[(CO)(2)(CN)Fe(mu-ndt)Ni(mu-ndt)Fe(CO)(3)] (3) and the dicyanide complex (PPh(4))(2)[(CO)(2)(CN)Fe(mu-ndt)Ni(mu-ndt)Fe(CO)(2)(CN)] (4) were isolated. X-ray structural analyses of the trinuclear complexes revealed a Fe-Ni-Fe array in which the metal centers are connected by the ndt sulfur bridges and direct Fe-Ni bonds. Hydrogen bonding between the CN ligand in 3 and cocrystallized ethanol was found in the solid-state structure. The monocyanide complex 3 and dicyanide complex 4 reacted with acids such as HOTf or HCl generating insoluble materials, whereas complex 1 did not react.
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Affiliation(s)
- Satyanarayan Pal
- Department of Chemistry, Graduate School of Science and Research Center for Materials, Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
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28
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Tard C, Pickett CJ. Structural and functional analogues of the active sites of the [Fe]-, [NiFe]-, and [FeFe]-hydrogenases. Chem Rev 2009; 109:2245-74. [PMID: 19438209 DOI: 10.1021/cr800542q] [Citation(s) in RCA: 1020] [Impact Index Per Article: 63.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Cédric Tard
- Laboratoire d'Electrochimie Moléculaire, Unité Mixte de Recherche Université-CNRS 7591, Université Paris Diderot, 75013 Paris, France
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29
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McGlynn SE, Mulder DW, Shepard EM, Broderick JB, Peters JW. Hydrogenase cluster biosynthesis: organometallic chemistry nature's way. Dalton Trans 2009:4274-85. [PMID: 19662302 DOI: 10.1039/b821432h] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
It has been over a decade now since it was revealed that the metal containing active sites of hydrogenases possess carbonyl and cyanide ligands bound to iron. The presence of these ligands in hydrogenases came as a surprise and to-date these ligands have not been observed to be associated with any other enzymatic metallocenter. The elucidation of the structures of these unique metalloenzymes and their associated metal clusters created opportunity for a number of different lines of research. For synthetic chemists, the structures of hydrogenase active sites have provided attractive targets for syntheses that advance our understanding of the electronic structure and reactivity of these unique enzyme active sites. These efforts contribute to the synthesis of first row transition metal catalysts for hydrogen oxidation and hydrogen production that could have significant impacts on alternative and renewable energy solutions. Although effective synthetic approaches have been identified to generate models with a high degree of similarity to these active sites, the details of how these metal clusters are synthesized biochemically have not been resolved. Since hydrogen metabolism is presumed to be an early feature in the energetics of life and hydrogen metabolizing organisms can be traced very early in molecular phylogeny, the metal clusters at hydrogenase active sites are presumed to be among the earliest of known co-factors. Comparison of mineral based precursors and synthetic cluster analog chemistry to what is observed in contemporary biological systems may shed light on how proto-metabolically relevant catalysts first arose prebiotically by the processes of adoption of pre-existing functionality and ligand assisted catalysis.
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Affiliation(s)
- Shawn E McGlynn
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59715, USA
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30
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Flores-Chávez B, Alvarado-Rodríguez JG, Andrade-López N, García-Montalvo V, Aquino-Torres E. Hypervalence in germanium compounds containing the tetracylic moiety {S(C6H3S)2O}Ge via O···Ge transannular interactions: A structural study. Polyhedron 2009. [DOI: 10.1016/j.poly.2008.12.007] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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31
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Tanino S, Li Z, Ohki Y, Tatsumi K. A Dithiolate-Bridged (CN)2(CO)Fe−Ni Complex Reproducing the IR Bands of [NiFe] Hydrogenase. Inorg Chem 2009; 48:2358-60. [DOI: 10.1021/ic900017s] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Soichiro Tanino
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Zilong Li
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Yasuhiro Ohki
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Kazuyuki Tatsumi
- Department of Chemistry, Graduate School of Science, and Research Center for Materials Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
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32
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Ichikawa K, Matsumoto T, Ogo S. Critical aspects of [NiFe]hydrogenase ligand composition. Dalton Trans 2009:4304-9. [DOI: 10.1039/b819395a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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33
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34
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Ohki Y, Takikawa Y, Sadohara H, Kesenheimer C, Engendahl B, Kapatina E, Tatsumi K. Reactions at the Ru-S Bonds of Coordinatively Unsaturated Ruthenium Complexes with Tethered 2,6-Dimesitylphenyl Thiolate. Chem Asian J 2008; 3:1625-35. [DOI: 10.1002/asia.200800106] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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35
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Nickel–thiolate and iron–thiolate cyanocarbonyl complexes: Modeling the nickel and iron sites of [NiFe] hydrogenase. CR CHIM 2008. [DOI: 10.1016/j.crci.2008.04.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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36
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Ohki Y, Yasumura K, Kuge K, Tanino S, Ando M, Li Z, Tatsumi K. Thiolate-bridged dinuclear iron(tris-carbonyl)-nickel complexes relevant to the active site of [NiFe] hydrogenase. Proc Natl Acad Sci U S A 2008; 105:7652-7. [PMID: 18511566 PMCID: PMC2409409 DOI: 10.1073/pnas.0800538105] [Citation(s) in RCA: 66] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2008] [Indexed: 11/18/2022] Open
Abstract
The reaction of NiBr(2)(EtOH)(4) with a 1:2-3 mixture of FeBr(2)(CO)(4) and Na(SPh) generated a linear trinuclear Fe-Ni-Fe cluster (CO)(3)Fe(mu-SPh)(3)Ni(mu-SPh)(3)Fe(CO)(3), 1, whereas the analogous reaction system FeBr(2)(CO)(4)/Na(S(t)Bu)/NiBr(2)(EtOH)(4) (1:2-3:1) gave rise to a linear tetranuclear Fe-Ni-Ni-Fe cluster [(CO)(3)Fe(mu-S(t)Bu)(3)Ni(mu-Br)](2), 2. By using this tetranuclear cluster 2 as the precursor, we have developed a new synthetic route to a series of thiolate-bridged dinuclear Fe(CO)(3)-Ni complexes, the structures of which mimic [NiFe] hydrogenase active sites. The reactions of 2 with SC(NMe(2))(2) (tmtu), Na{S(CH(2))(2)SMe} and ortho-NaS(C(6)H(4))SR (R = Me, (t)Bu) led to isolation of (CO)(3)Fe(mu-S(t)Bu)(3)NiBr(tmtu), 3, (CO)(3)Fe(S(t)Bu)(mu-S(t)Bu)(2)Ni{S(CH(2))(2)SMe}, 4, and (CO)(3)Fe(S(t)Bu)(mu-S(t)Bu)(2)Ni{S(C(6)H(4))SR}, 5a (R = Me) and 5b (R = (t)Bu), respectively. On the other hand, treatment of 2 with 2-methylthio-phenolate (ortho-O(C(6)H(4))SMe) in methanol resulted in (CO)(3)Fe(mu-S(t)Bu)(3)Ni(MeOH){O(C(6)H(4))SMe}, 6a. The methanol molecule bound to Ni is labile and is readily released under reduced pressure to afford (CO)(3)Fe(S(t)Bu)(mu-S(t)Bu)(2)Ni{O(C(6)H(4))SMe}, 6b, and the coordination geometry of nickel changes from octahedral to square planar. Likewise, the reaction of 2 with NaOAc in methanol followed by crystallization from THF gave (CO)(3)Fe(mu-S(t)Bu)(3)Ni(THF)(OAc), 7. The dinuclear complexes, 3-7, are thermally unstable, and a key to their successful isolation is to carry out the reactions and manipulations at -40 degrees C.
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Affiliation(s)
- Yasuhiro Ohki
- Research Center for Materials Science, Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Kazunari Yasumura
- Research Center for Materials Science, Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Katsuaki Kuge
- Research Center for Materials Science, Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Soichiro Tanino
- Research Center for Materials Science, Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Masaru Ando
- Research Center for Materials Science, Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Zilong Li
- Research Center for Materials Science, Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
| | - Kazuyuki Tatsumi
- Research Center for Materials Science, Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
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37
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Stenson P, Board A, Marin-Becerra A, Blake A, Davies E, Wilson C, McMaster J, Schröder M. Molecular and Electronic Structures of One-Electron Oxidized NiII–(Dithiosalicylidenediamine) Complexes: NiIII–Thiolate versus NiII–Thiyl Radical States. Chemistry 2008; 14:2564-76. [DOI: 10.1002/chem.200701108] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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38
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Canaguier S, Artero V, Fontecave M. Modelling NiFe hydrogenases: nickel-based electrocatalysts for hydrogen production. Dalton Trans 2008:315-25. [DOI: 10.1039/b713567j] [Citation(s) in RCA: 131] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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39
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Oudart Y, Artero V, Pécaut J, Lebrun C, Fontecave M. Dinuclear Nickel–Ruthenium Complexes as Functional Bio-Inspired Models of [NiFe] Hydrogenases. Eur J Inorg Chem 2007. [DOI: 10.1002/ejic.200700067] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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40
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Pardo A, De Lacey AL, Fernández VM, Fan HJ, Fan Y, Hall MB. Density functional study of the catalytic cycle of nickel–iron [NiFe] hydrogenases and the involvement of high-spin nickel(II). J Biol Inorg Chem 2006; 11:286-306. [PMID: 16511689 DOI: 10.1007/s00775-005-0076-3] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2005] [Accepted: 12/14/2005] [Indexed: 10/25/2022]
Abstract
In light of recent experiments suggesting high-spin (HS) Ni(II) species in the catalytic cycle of [NiFe] hydrogenase, a series of models of the Ni(II) forms Ni-SI(I,II), SI-CO and Ni-R(I,II,III) were examined in their high-spin states via density functional calculations. Because of its importance in the catalytic cycle, the Ni-C form was also included in this study. Unlike the Ni(II) forms in previous studies, in which a low-spin (LS) state was assumed and a square-planar structure found, the optimized geometries of these HS Ni(II) forms resemble those observed in the crystal structures: a distorted tetrahedral to distorted pyramidal coordination for the NiS4. This resemblance is particularly significant because the LS state is 20-30 kcal/mol less stable than the HS state for the geometry of the crystal structure. If these Ni(II) forms in the enzyme are not high spin, a large change in geometry at the active site is required during the catalytic cycle. Furthermore, only the HS state for the CO-inhibited form SI-CO has CO stretching frequencies that match the experimental results. As in the previous work, these new results show that the heterolytic cleavage reaction of dihydrogen (where H2 is cleaved with the metal acting as a hydride acceptor and a cysteine as the proton acceptor) has a lower energy barrier and is more exothermic when the active site is oxidized to Ni(III). The enzyme models described here are supported by a calibrated correlation of the calculated and measured CO stretching frequencies of the forms of the enzyme. The correlation coefficient for the final set of models of the forms of [NiFe] hydrogenase is 0.8.
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Affiliation(s)
- Alejandro Pardo
- Instituto de Catalisis, CSIC, c/ Marie Curie s/n, Campus de Cantoblanco, 28049, Madrid, Spain
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41
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Journaux Y, Lozan V, Klingele J, Kersting B. Stabilisation of a paramagnetic BH(4-)-bridged dinickel(II) complex by a macrodinucleating hexaaza-dithiophenolate ligand. Chem Commun (Camb) 2006:83-4. [PMID: 16353100 DOI: 10.1039/b512744k] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The first paramagnetic borohydrido-bridged dinuclear nickel(II) complex, [(L)Ni(II)2(mu(1,3)-BH4)]+, stabilised by a sterically demanding hexaaza-dithiophenolate macrocycle, has been obtained by the reaction of [(L)Ni(II)2(micro-ClO4)]+ with N(n)Bu4BH4.
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Affiliation(s)
- Yves Journaux
- Laboratoire de Chimie Inorganique et Matériaux Moléculaires Bat F UMR CNRS 7071, case courrier 42, Université Pierre et Marie Curie, 4 place Jussieu, F75252, Paris cedex 05, France.
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42
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Stenson PA, Marin-Becerra A, Wilson C, Blake AJ, McMaster J, Schröder M. Formation of [(L)Ni(μ2-S)x{Fe(CO)3}x] adducts (x = 1 or 2): analogues of the active site of [NiFe] hydrogenase. Chem Commun (Camb) 2006:317-9. [PMID: 16391746 DOI: 10.1039/b509798c] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The binuclear [Ni(L)Fe(CO)3], , and trinuclear [Ni(L){Fe(CO)3}2], , complexes adopt unusual structural motifs whereby Fe(CO)3 units bind to [Ni(L)] via mu2-S bridging modes, C=N imine pi-bonds and potential Ni-Fe bonding interactions.
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Affiliation(s)
- Philip A Stenson
- School of Chemistry, University of Nottingham, Nottingham, UK NG7 2RD
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43
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Zhu W, Marr AC, Wang Q, Neese F, Spencer DJE, Blake AJ, Cooke PA, Wilson C, Schröder M. Modulation of the electronic structure and the Ni-Fe distance in heterobimetallic models for the active site in [NiFe]hydrogenase. Proc Natl Acad Sci U S A 2005; 102:18280-5. [PMID: 16352727 PMCID: PMC1317917 DOI: 10.1073/pnas.0505779102] [Citation(s) in RCA: 145] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/11/2005] [Indexed: 11/18/2022] Open
Abstract
Reaction of the mononuclear Ni(II) thiolate complexes [Ni(L)] [L, L(1), H2L(1), bis(2-mercaptoethyl)-1,2-dimercaptoethane; L(2), H2L(2), N,N'-dimethyl-N,N'-bis(2-mercaptoethyl)-bis(aminoethyl)sulfide] with [FeCp(CO)2I] gives the dithiolate-bridged heterobimetallic species, [Ni(L(1))FeCp(CO)]PF6, 1, and [Ni(L(2))FeCp]I, 2, respectively. Binding of a Fe(CO)3 fragment via reaction of square-planar [Ni(pdt)(dppe)] (dppe, 1,2-diphenylphosphinoethane; pdt(2-), 1,3-propanedithiolate) with Fe3(CO)12 or [Fe(CO)3(BDA)] (BDA, benzylidene acetone) affords diamagnetic [(dppe)Ni(mu-pdt)Fe(CO)3], 3, in which the Ni(II) center is bound tetrahedrally to two thiolate S-donors and to two P-donors. The complex [(dppe)Ni(mu-pdt)Fe(CO)3], 3, reacts in solution via rearrangement to afford [(OC)Ni(mu-dppe)(mu-pdt)Fe(CO)2], 4, in which one P-donor of dppe is bound to Ni and the other to Fe, and a CO ligand has transferred from Fe to Ni. Additionally, the syntheses of 3 and 4 afford the side products [(dppe)Ni(CO)2] and [(OC)3Fe(pdt)Fe(CO)3] together with the trinuclear species [(dppe)(CO)Fe(mu-CO)(mu-pdt)Fe(mu-pdt)Fe(CO)3], 5. Reaction of [Ni(pdt)(dppe)] with [FeCp(CO)2I] in CH2Cl2 affords two products [(dppe)Ni(mu-pdt)FeCp(CO)]PF6, 6, and [(dppe)Ni(pdt)(mu-I)Ni(dppe)]PF6, 7. The complexes 2, 3, and 4 show Ni-Fe distances of 2.539(4), 2.4666(6), and 2.4777(7) A, respectively, with relatively acute dihedral angles of 79.5-81.8 degrees for the Ni-S2-Fe bridge, thus mimicking the shortened Ni...Fe distance (2.5 A) and the acute dihedral angle of the Ni-S2-Fe moiety observed in certain active forms of [NiFe]hydrogenase. The role of direct Ni-Fe bonding in these complexes is discussed and linked to electronic structure calculations on [(dppe)Ni(pdt)Fe(CO)3], 3, which confirm the presence of a bent Ni(d(z2))-Fe(d(z2)) sigma-bond in a singlet ground state.
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Affiliation(s)
- Wenfeng Zhu
- School of Chemistry, University of Nottingham, University Park, Nottingham NG7 2RD, United Kingdom
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44
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Sakaniwa D, Ohe T, Misumi T, Monjushiro H, Onoda A, Yamamura T. Covalent Immobilization of Metal-binding Motifs of Enzymes on Quartz Surface. [Ni(Cys-X2-Cys)2]2−of Hydrogenases. CHEM LETT 2005. [DOI: 10.1246/cl.2005.1634] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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45
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Zampella G, Bruschi M, Fantucci P, De Gioia L. DFT Investigation of H2 Activation by [M(NHPnPr3)(‘S3‘)] (M = Ni, Pd). Insight into Key Factors Relevant to the Design of Hydrogenase Functional Models. J Am Chem Soc 2005; 127:13180-9. [PMID: 16173745 DOI: 10.1021/ja0508424] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Density functional theory has been used to investigate the reaction between H(2) and [Ni(NHPnPr(3))('S3')] or [Pd(NHPnPr(3))('S3')], where 'S3' = bis(2-sulfanylphenyl)sulfide(2-), which are among the few synthetic complexes featuring a metal coordination environment similar to that observed in the [NiFe] hydrogenase active site and capable of catalyzing H(2) heterolytic cleavage. Results allowed us to unravel the reaction mechanism, which is consistent with an oxidative addition-hydrogen migration pathway for [Ni(NHPnPr(3))('S3')], whereas metathesis is also possible with [Pd(NHPnPr(3))('S3')]. Unexpectedly, H(2) binding and activation implies structural reorganization of the metal coordination environment. It turns out that the structural rearrangement in [Ni(NHPnPr(3))('S3')] and [Pd(NHPnPr(3))('S3')] can take place due to the peculiar structural features of the Ni and Pd ligands, explaining the remarkable catalytic properties. However, the structural reorganization is the most unfavorable step along the H(2) cleavage pathway (DeltaG > 100 kJ mol(-1)), an observation that is relevant for the design and synthesis of novel biomimetic catalysts.
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Affiliation(s)
- Giuseppe Zampella
- Department of Biotechnology and Biosciences, University of Milan-Bicocca, I-20156 Milan, Italy
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46
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Li Z, Ohki Y, Tatsumi K. Dithiolato-Bridged Dinuclear Iron−Nickel Complexes [Fe(CO)2(CN)2(μ-SCH2CH2CH2S)Ni(S2CNR2)]-Modeling the Active Site of [NiFe] Hydrogenase. J Am Chem Soc 2005; 127:8950-1. [PMID: 15969562 DOI: 10.1021/ja051590+] [Citation(s) in RCA: 136] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
[NiFe] hydrogenase, the enzyme of which catalyzes the reversible oxidation of molecular hydrogen to protons and electrons, contains a unique heterodinuclear thiolate-bridged Ni-Fe complex in which the iron center is coordinated by CO and CN. We have synthesized dithiolate-bridged Ni-Fe complexes bearing CO and CN ligands to model the active center of [NiFe] hydrogenase. The Ni-Fe complexes containing a [(CN)2(CO)2Fe(mu-S2)NiS2] framework are the closest yet structural models of [NiFe] hydrogenase.
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Affiliation(s)
- Zilong Li
- Research Center for Materials Science and Department of Chemistry, Graduate School of Science, Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8602, Japan
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47
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Sellmann D, Lauderbach F, Heinemann F. Trinuclear [NiFe] Clusters as Structural Models for [NiFe] Hydrogenase Active Sites. Eur J Inorg Chem 2005. [DOI: 10.1002/ejic.200400587] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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48
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New nickel complexes with an S4 coordination sphere; synthesis, characterization and reactivity towards nickel and iron compounds. Inorganica Chim Acta 2004. [DOI: 10.1016/j.ica.2004.02.003] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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49
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Verhagen J, Lutz M, Spek A, Bouwman E. Synthesis and Characterisation of New Nickel-Iron Complexes with an S4 Coordination Environment around the Nickel Centre. Eur J Inorg Chem 2003. [DOI: 10.1002/ejic.200300285] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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50
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Alvarado‐Rodríguez J, Andrade‐López N, González‐Montiel S, Merino G, Vela A. Study of the D⇄Sb (D = O, S) Transannular Interaction in Sb‐Monohalogenated Dibenzostibocines − An Experimental and Theoretical Study. Eur J Inorg Chem 2003. [DOI: 10.1002/ejic.200300199] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- José G. Alvarado‐Rodríguez
- Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca‐Tulancingo, Pachuca, Hidalgo, México. C. P. 42076, Fax: (internat.) + 52‐771/717‐2000 ext. 6502
| | - Noemí Andrade‐López
- Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca‐Tulancingo, Pachuca, Hidalgo, México. C. P. 42076, Fax: (internat.) + 52‐771/717‐2000 ext. 6502
| | - Simplicio González‐Montiel
- Centro de Investigaciones Químicas, Universidad Autónoma del Estado de Hidalgo, Km. 4.5 Carretera Pachuca‐Tulancingo, Pachuca, Hidalgo, México. C. P. 42076, Fax: (internat.) + 52‐771/717‐2000 ext. 6502
| | - Gabriel Merino
- Departamento de Química, Centro de Investigación y de Estudios Avanzados, I.P.N. A. P. 14‐740, México Fax: (internat.) +52‐55/5747‐7113
| | - Alberto Vela
- Departamento de Química, Centro de Investigación y de Estudios Avanzados, I.P.N. A. P. 14‐740, México Fax: (internat.) +52‐55/5747‐7113
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