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Shriver Z, Sasisekharan R. Capillary Electrophoretic Analysis of Isolated Sulfated Polysaccharides to Characterize Pharmaceutical Products. Methods Mol Biol 2021; 2303:329-339. [PMID: 34626391 DOI: 10.1007/978-1-0716-1398-6_27] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
Abstract
Capillary electrophoresis is a powerful methodology for quantification and structural characterization of highly anionic polysaccharides. Separation of saccharides under conditions of electrophoretic flow, typically achieved under low pH (Ampofo et al., Anal Biochem 199: 249-255, 1991; Rhomberg et al., Proc Natl Acad Sci U S A 95: 4176-4181, 1998) is charge-based. Resolution of components is often superior to flow-based techniques, such as liquid chromatography. During the heparin contamination crisis, capillary electrophoresis was one of the key methodologies used to identify whether or not heparin lots were contaminated (Guerrini et al., Nat Biotechnol 26: 669-675, 2008; Ye et al., J Pharm Biomed Anal 85: 99-107, 2013; Volpi et al., Electrophoresis 33: 1531-1537, 2012).Here we describe a method for the isolation of sulfated heparin/heparan sulfate saccharides from urine, their digestion by deployment of heparinase enzymes (Ernst et al., Crit Rev Biochem Mol Biol 30: 387-444, 1995) resolution of species through use of orthogonal digestions, and analysis of the resulting disaccharides by capillary electrophoresis.
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Affiliation(s)
- Zachary Shriver
- Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA
| | - Ram Sasisekharan
- Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA, USA.
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2
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Xu M, Zhang H, Tang T, Zhou J, Zhou W, Tan S, He B. Potential and applications of capillary electrophoresis for analyzing traditional Chinese medicine: a critical review. Analyst 2021; 146:4724-4736. [PMID: 34269779 DOI: 10.1039/d1an00767j] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Capillary electrophoresis (CE) presents a promising possibility for analyzing traditional Chinese medicine (TCM) due to its low reagent consumption, high analysis speed, and enhanced efficiency. Herein we review the employment of CE for analyzing the effective components in TCM and identifying TCM via a fingerprint. Furthermore, we discuss the application of state-of-the-art capillary electrophoresis modes for screening enzyme inhibitors and investigating the interactions between TCM and plasma proteins. The review concludes with recommendations for future studies and improvements in this field of research. The general development trend identified in this review indicates that the application of CE has significantly improved TCM assay performance.
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Affiliation(s)
- Mengchang Xu
- Academician Workstation, Changsha Medical University, Changsha 410219, China.
| | - Hanyong Zhang
- Academician Workstation, Changsha Medical University, Changsha 410219, China.
| | - Tong Tang
- Academician Workstation, Changsha Medical University, Changsha 410219, China.
| | - Ji Zhou
- Academician Workstation, Changsha Medical University, Changsha 410219, China.
| | - Wenhu Zhou
- Academician Workstation, Changsha Medical University, Changsha 410219, China.
| | - Songwen Tan
- Academician Workstation, Changsha Medical University, Changsha 410219, China.
| | - Binsheng He
- Academician Workstation, Changsha Medical University, Changsha 410219, China.
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Mozafari M, El Deeb S, Krull F, Wildgruber R, Weber G, Reiter CG, Wätzig H. Interaction of albumins and heparinoids investigated by affinity capillary electrophoresis and free flow electrophoresis. Electrophoresis 2017; 39:569-580. [PMID: 29131355 DOI: 10.1002/elps.201700202] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2017] [Revised: 10/20/2017] [Accepted: 11/06/2017] [Indexed: 01/04/2023]
Abstract
A fast and precise affinity capillary electrophoresis (ACE) method has been applied to investigate the interactions between two serum albumins (HSA and BSA) and heparinoids. Furthermore, different free flow electrophoresis methods were developed to separate the species which appears owing to interaction of albumins with pentosan polysulfate sodium (PPS) under different experimental conditions. For ACE experiments, the normalized mobility ratios (∆R/Rf ), which provided information about the binding strength and the overall charge of the protein-ligand complex, were used to evaluate the binding affinities. ACE experiments were performed at two different temperatures (23 and 37°C). Both BSA and HSA interact more strongly with PPS than with unfractionated and low molecular weight heparins. For PPS, the interactions can already be observed at low mg/L concentrations (3 mg/L), and saturation is already obtained at approximately 20 mg/L. Unfractionated heparin showed almost no interactions with BSA at 23°C, but weak interactions at 37°C at higher heparin concentrations. The additional signals also appeared at higher concentrations at 37°C. Nevertheless, in most cases the binding data were similar at both temperatures. Furthermore, HSA showed a characteristic splitting in two peaks especially after interacting with PPS, which is probably attributable to the formation of two species or conformational change of HSA after interacting with PPS. The free flow electrophoresis methods have confirmed and completed the ACE experiments.
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Affiliation(s)
- Mona Mozafari
- Institute of Medicinal and Pharmaceutical Chemistry, TU Braunschweig, Brunswick, Germany
| | - Sami El Deeb
- Institute of Medicinal and Pharmaceutical Chemistry, TU Braunschweig, Brunswick, Germany
| | - Friederike Krull
- Institute of Medicinal and Pharmaceutical Chemistry, TU Braunschweig, Brunswick, Germany
| | | | | | | | - Hermann Wätzig
- Institute of Medicinal and Pharmaceutical Chemistry, TU Braunschweig, Brunswick, Germany
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Mozafari M, Balasupramaniam S, Preu L, El Deeb S, Reiter CG, Wätzig H. Using affinity capillary electrophoresis and computational models for binding studies of heparinoids with p-selectin and other proteins. Electrophoresis 2017; 38:1560-1571. [DOI: 10.1002/elps.201600480] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2016] [Revised: 02/28/2017] [Accepted: 03/01/2017] [Indexed: 02/01/2023]
Affiliation(s)
- Mona Mozafari
- Institute of Medicinal and Pharmaceutical Chemistry; TU Braunschweig; Braunschweig Germany
| | | | - Lutz Preu
- Institute of Medicinal and Pharmaceutical Chemistry; TU Braunschweig; Braunschweig Germany
| | - Sami El Deeb
- Institute of Medicinal and Pharmaceutical Chemistry; TU Braunschweig; Braunschweig Germany
| | | | - Hermann Wätzig
- Institute of Medicinal and Pharmaceutical Chemistry; TU Braunschweig; Braunschweig Germany
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Shriver Z, Sasisekharan R. Capillary electrophoretic analysis of isolated sulfated polysaccharides to characterize pharmaceutical products. Methods Mol Biol 2015; 1229:161-71. [PMID: 25325952 PMCID: PMC5460761 DOI: 10.1007/978-1-4939-1714-3_15] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Capillary electrophoresis is a powerful methodology for quantification and structural characterization of highly anionic polysaccharides. Separation of saccharides under conditions of electrophoretic flow, typically achieved under low pH (Ampofo et al., Anal Biochem 199:249-255, 1991; Rhomberg et al., Proc Natl Acad Sci U S A 95:4176-4181, 1998), is charge-based. Resolution of components is often superior to flow-based techniques, such as liquid chromatography. During the heparin contamination crisis, capillary electrophoresis was one of the key methodologies used to identify whether or not heparin lots were contaminated (Guerrini et al., Nat Biotechnol 26:669-675, 2008). Here we describe a method for isolation of sulfated heparin/heparan sulfate saccharides from urine, their digestion by deployment of heparinase enzymes (Ernst et al., Crit Rev Biochem Mol Biol 30:387-444, 1995), resolution of species through use of orthogonal digestions, and analysis of the resulting disaccharides by capillary electrophoresis.
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Affiliation(s)
- Z Shriver
- Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA
| | - R Sasisekharan
- Department of Biological Engineering, Koch Institute of Integrative Cancer Research, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA, 02139, USA
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Abdel-Haq H, Bossù E. Capillary electrophoresis as a tool for the characterization of pentosan nanoparticles. J Chromatogr A 2012; 1257:125-30. [DOI: 10.1016/j.chroma.2012.07.096] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Revised: 07/03/2012] [Accepted: 07/27/2012] [Indexed: 01/09/2023]
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7
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Ganzera M. Quality control of herbal medicines by capillary electrophoresis: Potential, requirements and applications. Electrophoresis 2008; 29:3489-503. [DOI: 10.1002/elps.200700901] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Soria AC, Wright B, Goodall DM, Wilson J. Data processing in metabolic fingerprinting by CE-UV: Application to urine samples from autistic children. Electrophoresis 2007; 28:950-64. [PMID: 17370305 DOI: 10.1002/elps.200600381] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Metabolic fingerprinting of biofluids such as urine can be used to detect and analyse differences between individuals. However, before pattern recognition methods can be utilised for classification, preprocessing techniques for the denoising, baseline removal, normalisation and alignment of electropherograms must be applied. Here a MEKC method using diode array detection has been used for high-resolution separation of both charged and neutral metabolites. Novel and generic algorithms have been developed for use prior to multivariate data analysis. Alignment is achieved by combining the use of reference peaks with a method that uses information from multiple wavelengths to align electropherograms to a reference signal. This metabolic fingerprinting approach by MEKC has been applied for the first time to urine samples from autistic and control children in a nontargeted and unbiased search for markers for autism. Although no biomarkers for autism could be determined using MEKC data here, the general approach presented could also be applied to the processing of other data collected by CE with UV-Vis detection.
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Affiliation(s)
- Ana C Soria
- Department of Chemistry, University of York, York, UK
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Scampicchio M, Mannino S, Zima J, Wang J. Chemometrics on Microchips: Towards the Classification of Wines. ELECTROANAL 2005. [DOI: 10.1002/elan.200403236] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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10
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Fu CY, Petrich LI, Daley PF, Burnham AK. Intelligent Signal Processing for Detection System Optimization. Anal Chem 2005; 77:4051-7. [PMID: 15987110 DOI: 10.1021/ac049056s] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A wavelet-neural network signal processing method has demonstrated approximately 10-fold improvement over traditional signal processing methods for the detection limit of various nitrogen and phosphorus compounds from the output of a thermionic detector attached to a gas chromatograph. A blind test was conducted to validate the lower detection limit. All 14 of the compound spikes were detected when above the estimated threshold, including all 3 within a factor of 2 above the threshold. In addition, two of six spikes were detected at levels of half the concentration of the nominal threshold. Another two of the six would have been detected correctly if we had allowed human intervention to examine the processed data. One apparent false positive in five nulls was traced to a solvent impurity, whose presence was subsequently identified by analyzing a solvent aliquot evaporated to 1% residual volume, while the other four nulls were properly classified. We view this signal processing method as broadly applicable in analytical chemistry, and we advocate that advanced signal processing methods should be applied as directly as possible to the raw detector output so that less discriminating preprocessing and postprocessing does not throw away valuable signal.
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Affiliation(s)
- Chi Yung Fu
- Lawrence Livermore National Laboratory, Livermore, California 94550, USA.
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Sentellas S, Saurina J. Chemometrics in capillary electrophoresis. Part B: Methods for data analysis. J Sep Sci 2003. [DOI: 10.1002/jssc.200301515] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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