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Bolognesi P, Carravetta V, Sementa L, Barcaro G, Monti S, Manjari Mishra P, Cartoni A, Castrovilli MC, Chiarinelli J, Tosic S, Marinkovic BP, Richter R, Avaldi L. Core Shell Investigation of 2-nitroimidazole. Front Chem 2019; 7:151. [PMID: 31001511 PMCID: PMC6454003 DOI: 10.3389/fchem.2019.00151] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2019] [Accepted: 02/28/2019] [Indexed: 02/01/2023] Open
Abstract
Tunability and selectivity of synchrotron radiation have been used to study the excitation and ionization of 2-nitroimidazole at the C, N, and O K-edges. The combination of a set of different measurements (X-ray photoelectron spectroscopy, near-edge photoabsorption spectroscopy, Resonant Auger electron spectroscopy, and mass spectrometry) and computational modeling have successfully disclosed local effects due to the chemical environment on both excitation/ionization and fragmentation of the molecule.
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Affiliation(s)
- Paola Bolognesi
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, Montelibretti, Italy
| | | | - Luca Sementa
- CNR-Istituto per i Processi Chimico Fisici, Pisa, Italy
| | | | - Susanna Monti
- CNR-Istituto di Chimica dei Composti Organo Metallici, Pisa, Italy
| | - Preeti Manjari Mishra
- Stored and Cooled Ions Division, Max Planck Institute for Nuclear Physics, Heidelberg, Germany
| | - Antonella Cartoni
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, Montelibretti, Italy.,Dipartimento di Chimica, Sapienza Università di Roma, Rome, Italy
| | - Mattea C Castrovilli
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, Montelibretti, Italy
| | - Jacopo Chiarinelli
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, Montelibretti, Italy.,Dipartimento di Scienze, Università degli Studi di Roma 3, Rome, Italy
| | - Sanja Tosic
- Institute of Physics, University of Belgrade, Belgrade, Serbia
| | | | - Robert Richter
- Elettra Sincrotrone Trieste, Area Science Park, Trieste, Italy
| | - Lorenzo Avaldi
- CNR-Istituto di Struttura della Materia, Area della Ricerca di Roma 1, Montelibretti, Italy
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2
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Okada K, Suemitsu A, Terashima T, Iwasaki Y, Tamenori Y, Suzuki IH, Nagaoka S, Tabayashi K. Photofragmentation of the K-shell excited perfluorocyclobutane: anisotropies in the fragments and breakdown pathways. JOURNAL OF MASS SPECTROMETRY : JMS 2011; 46:635-639. [PMID: 21671438 DOI: 10.1002/jms.1932] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Total ion yield spectrum of perfluorocyclobutane (c-C(4)F(8)) has been measured in the C and F K-shell excitation regions. The peak assignments are presented based on angle-resolved photofragment ion mass spectrometry. The peaks at 291.34 and 688.5 eV are found to come from the transitions from the C 1s and the F 1s to the lowest unoccupied b(2)σ(CF)* orbital, respectively. A photoelectron-photoion-photoion coincidence spectrum is acquired at 700.1 eV for clarifying the breakdown pathways of c-C(4)F(8)(2+). Two series of the pathways are identified; fission of F atom(s) followed by charge separation and elimination of CF(2) or CF(3) followed by charge separation.
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Affiliation(s)
- K Okada
- Department of Chemistry, Graduate School of Science, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
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3
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Rühl E. Excitation, Fragmentation and Decay Processes. Core Level Excitation in Molecular Clusters. ACTA ACUST UNITED AC 2010. [DOI: 10.1002/bbpc.19920960917] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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4
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Bolognesi P, Coreno M, Avaldi L, Storchi L, Tarantelli F. Site-selected Auger electron spectroscopy of N2O. J Chem Phys 2006; 125:054306. [PMID: 16942212 DOI: 10.1063/1.2213254] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The N 1s Auger spectra for the two nonequivalent N atoms in N2O have been measured via Auger electron-photoelectron coincidence spectroscopy. The site-selected Auger spectra are compared with the normal Auger spectrum and with accurate theoretical calculations accounting for the effects of the dynamics of the nuclei on the energy and linewidth of the Auger bands. Such effects are found to be crucial factors in determining the different band shapes in the site-selected spectra.
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Affiliation(s)
- Paola Bolognesi
- CNR-IMIP, Area della Ricerca di Roma 1, CP 10, 00016 Monterotondo Scalo, Italy
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5
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Takahashi O, Tabayashi K, Wada SI, Sumii R, Tanaka K, Odelius M, Pettersson LGM. Theoretical study of ion desorption from poly-(methyl methacrylate) and poly-(isopropenyl acetate) thin films through core excitation. J Chem Phys 2006; 124:124901. [PMID: 16599719 DOI: 10.1063/1.2176605] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
Site-specific chemical reactions following core excitation of poly-(methyl methacrylate) (PMMA) and poly-(isopropenyl acetate) (PiPAc) thin films were investigated. New x-ray absorption spectra of PMMA and PiPAc at the C and O K edges and theoretical spectra within the framework of density functional theory using model molecules were reported, and some new peak assignments were proposed for these spectra. Core-hole excited state molecular dynamics simulations were performed to discuss dissociation dynamics for the target systems, and some specific reaction mechanisms were discussed and explained theoretically; for example, the amount of CH3 ion fragments for PMMA was enhanced at the C and O K edges through the existence of the repulsive sigma*(O-CH3) excited state.
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Affiliation(s)
- Osamu Takahashi
- Department of Chemistry, Hiroshima University, Higashi-Hiroshima 739-8526, Japan.
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6
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Takahashi O, Pettersson LGM. Functional dependence of core-excitation energies. J Chem Phys 2004; 121:10339-45. [PMID: 15549911 DOI: 10.1063/1.1809610] [Citation(s) in RCA: 132] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We examine in depth the functional dependence of computed core-electron binding and excitation energies based on a total-energy difference approach within Kohn-Sham density functional theory. Twenty-seven functional combinations were studied using a database of reliable experimental data on 18 molecules. The computed core-electron binding energies are largely dependent on the choice of exchange functional. The term value of the first resonant excited state and energy differences between the lowest core-excited states are, however, quite insensitive to the choice of functionals since the errors due to the core-region cancel out. Using these results we define a different exchange functional, which mixes two functionals designed by Perdew and Wang (PD86 and PD91), with the best results for both excitation and binding energies obtained for a mixing ratio 60:40 between these. We also reexamine the relativistic corrections for inner-shell excitations.
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Affiliation(s)
- Osamu Takahashi
- Fysikum, AlbaNova University Center, Stockholm University, S-106 91 Stockholm, Sweden
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7
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Rühl E, Flesch R. Mechanism of anion formation in C 1s→π*-excited carbon dioxide. J Chem Phys 2004; 121:5322-7. [PMID: 15352825 DOI: 10.1063/1.1784780] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The mechanism of anion formation from core-excited carbon dioxide is investigated in the C 1s-excitation regime (280-340 eV), where negative-ion-positive-ion coincidences and negative-ion-positive-ion-positive-ion coincidences experiments are performed. O(-) formation occurs efficiently upon C 1s-->pi(*)-excitation (290.7 eV) from the singly charged cation CO(2) (+). This anion is measured in coincidence with the singly charged atoms C(+) and O(+). The formation of atomic cations is accompanied by a substantial kinetic energy release. This suggests that an intermediate CO(++) is formed together with O(-), where the dication decays via fission. The results are discussed in terms of an anion formation mechanism from core-excited molecules considering previous experimental results.
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Affiliation(s)
- E Rühl
- Institut für Physikalische Chemie, Universität Würzburg, Am Hubland, 97074 Würzburg, Germany
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8
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Lago AF, Santos ACF, de Souza GGB. Mass spectrometry study of the fragmentation of valence and core-shell (Cl 2p) excited CHCl3 and CDCl3 molecules. J Chem Phys 2004; 120:9547-55. [PMID: 15267966 DOI: 10.1063/1.1701658] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
The dissociative photoionization of the chloroform and chloroform-d molecules has been studied in the valence region and around the chlorine 2p edge. Time-of-flight mass spectrometry in the coincidence mode-namely, photoelectron-photoion coincidence (PEPICO)-was employed. He I lamp and tunable synchrotron radiation were used as light sources. Total and partial ion yields have been recorded as a function of the photon energy. Singly, doubly, and triply ionized species have been observed below (195 eV), on (201 eV), and above (230 eV) the Cl 2p resonances. A definite degree of site-selective fragmentation was observed at the Cl 2p resonance as the relative contributions of several ionic species were seen to go through a maximum at 201 eV. At the same time all stable doubly charged ions were also observed at 198 eV (below the 2p resonances), resulting from direct ionization processes. Isotopic substitution is shown to provide a very efficient means of improving the mass resolution and assignment of unresolved peaks in spectra of CHCl(3), particularly for those fragments differing by a hydrogen atom. It is suggested that ultrafast fragmentation of the system following 2p excitation to a strongly antibonding state contributes to the large amount of Cl(+) observed in the PEPICO spectrum measured at 201 eV. Kinetic energy distributions were determined for the H(+), D(+), and Cl(+) fragments.
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Affiliation(s)
- A F Lago
- Instituto de Química, Universidade Federal do Rio de Janeiro, Ilha do Fundão, Rio de Janeiro, RJ, 21949-900, Brazil
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9
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Nagaoka SI, Mase K, Nakamura A, Nagao M, Yoshinobu J, Tanaka SI. Site-specific fragmentation caused by core-level photoionization: Effect of chemisorption. J Chem Phys 2002. [DOI: 10.1063/1.1494421] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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10
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Nagaoka SI, Fujibuchi T, Ohshita J, Nagashima U, Koyano I. Si:2p site-specific excitation and fragmentation of bridged trihalosilyl–trimethylsilyl molecules: role of the bridge and final-state effect. Chem Phys 2002. [DOI: 10.1016/s0301-0104(01)00656-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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11
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Suzuki IH, Saito N. Energy dependences of fragment ion yields from acetone photoexcited in the C1s and O1s transition regions. Chem Phys 2000. [DOI: 10.1016/s0301-0104(99)00401-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
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12
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Nagaoka SI, Mase K, Nagasono M, Tanaka SI, Urisu T, Ohshita J, Nagashima U. Site-specific phenomena in Si:2p core-level photoionization of X3Si(CH2)nSi(CH3)3 (X=F or Cl, n=0–2) condensed on a Si(111) surface. Chem Phys 1999. [DOI: 10.1016/s0301-0104(99)00264-5] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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13
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Fragment ion yields from CFCl3 photoexcited in regions of the Cl2p, the C1s, and the F1s electron transitions. Chem Phys 1998. [DOI: 10.1016/s0301-0104(98)00144-x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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14
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Holroyd RA, Sham T. Free ion yields for nonpolar liquids exposed to 1.6–3.5 keV X-rays. Radiat Phys Chem Oxf Engl 1993 1998. [DOI: 10.1016/s0969-806x(97)00085-6] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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15
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Nagaoka SI, Mase K, Nagasono M, Tanaka SI, Urisu T, Ohshita J. Site-specific fragmentation following Si:2p core-level photoionization of F3SiCH2CH2Si(CH3)3 condensed on a Au surface. J Chem Phys 1997. [DOI: 10.1063/1.474190] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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16
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Nagaoka SI, Fujibuchi T, Ohshita J, Ishikawa M, Koyano I. Fragmentation of F3SiCH2CH2Si(CH3)3 vapour following Si:2p core-level photoexcitation. A search for a site-specific process in complex molecules. ACTA ACUST UNITED AC 1997. [DOI: 10.1016/s0168-1176(97)00144-4] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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17
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Ankerhold U, Esser B, von Busch F. Ionization and fragmentation of OCS and CS2 after photoexcitation around the sulfur 2p edge. Chem Phys 1997. [DOI: 10.1016/s0301-0104(97)00111-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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18
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Affiliation(s)
- Eckart Rühl
- Institut für Physikalische und Theoretische Chemie, Freie Universität Berlin, Takustr. 3, D-14195 Berlin, Germany
- Institut für Physik, Johannes Gutenberg-Universität Mainz, D-55099 Mainz, Germany
| | - Hans-Werner Jochims
- Institut für Physikalische und Theoretische Chemie, Freie Universität Berlin, Takustr. 3, D-14195 Berlin, Germany
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Nenner I, Reynaud C, Schmelz HC, Ferrand-Tanaka L, Simon M, Morin P. Site Selective Fragmentation with Soft X-rays: From Gaseous Polyatomic Molecules, Free Clusters, Polymers, Adsorbates to Biological Macromolecules. Z PHYS CHEM 1996. [DOI: 10.1524/zpch.1996.195.part_1_2.043] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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20
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Frigo SP, Simons JK, Rosenberg RA. The soft x‐ray photochemistry of physisorbed SiF4. II. Mechanisms and kinetics. J Chem Phys 1995. [DOI: 10.1063/1.470703] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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21
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Frigo SP, Simons JK, Rosenberg RA. The soft x‐ray photochemistry of physisorbed SiF4. I. Reactions of the molecular species through desorption and dissociation. J Chem Phys 1995. [DOI: 10.1063/1.469873] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Nagaoka S, Ohshita J, Ishikawa M, Takano K, Nagashima U, Takeuchi T, Koyano I. Site‐specific fragmentation following Si:2pcore‐level photoexcitation of F3SiCH2Si(CH3)3in the vapor phase. J Chem Phys 1995. [DOI: 10.1063/1.469342] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Schmelz HC, Reynaud C, Simon M, Nenner I. Site‐selective fragmentation in core‐excited bromo‐chloro‐alkanes [Br(CH2)nCl]. J Chem Phys 1994. [DOI: 10.1063/1.467558] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Suzuki IH, Saito N, Bozek JD. Variation in ion-pair yields from CF2Cl2 photoexcited in the inner-shell excitation regions. ACTA ACUST UNITED AC 1994. [DOI: 10.1016/0168-1176(94)04012-5] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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25
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Suzuki IH, Bozek JD, Saito N. Ionic dissociation of CF2Cl2 photoexcited using monochromatic soft X-rays. Chem Phys 1994. [DOI: 10.1016/0301-0104(94)00003-4] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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26
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Mahalingam M, Lee K, Hanson DM. Rotational distributions of molecular ions following core excitation and decay. J Chem Phys 1993. [DOI: 10.1063/1.465064] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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