Mechanism of the Hypersensitivity Reaction of Plants

Affordable Phenotyping at the Edge for High-Throughput Detection of Hypersensitive Reaction Involving Cotyledon Loss

The use of low-cost depth imaging sensors is investigated to automate plant pathology tests. Spatial evolution is explored to discriminate plant resistance through the hypersensitive reaction involving cotyledon loss. A high temporal frame rate and a protocol operating with batches of plants enable to compensate for the low spatial resolution of depth cameras. Despite the high density of plants, a spatial drop of the depth is observed when the cotyledon loss occurs. We introduce a small and simple spatiotemporal feature space which is shown to carry enough information to automate the discrimination between batches of resistant (loss of cotyledons) and susceptible plants (no loss of cotyledons) with 97% accuracy and with a timing 30 times faster than for human annotation. The robustness of the method-in terms of density of plants in the batch and possible internal batch desynchronization-is assessed successfully with hundreds of varieties of Pepper in various environments. A study on the generalizability of the method suggests that it can be extended to other pathosystems and also to segregating plants, i.e., intermediate state with batches composed of resistant and susceptible plants. The imaging system developed, combined with the feature extraction method and classification model, provides a full pipeline with unequaled throughput and cost efficiency by comparison with the state-of-the-art one. This system can be deployed as a decision-support tool but is also compatible with a standalone technology where computation is done at the edge in real time.

Mathematical model of plant-virus interactions mediated by RNA interference

Cross-protection, which refers to a process whereby artificially inoculating a plant with a mild strain provides protection against a more aggressive isolate of the virus, is known to be an effective tool of disease control in plants. In this paper we derive and analyse a new mathematical model of the interactions between two competing viruses with particular account for RNA interference. Our results show that co-infection of the host can either increase or decrease the potency of individual infections depending on the levels of cross-protection or cross-enhancement between different viruses. Analytical and numerical bifurcation analyses are employed to investigate the stability of all steady states of the model in order to identify parameter regions where the system exhibits synergistic or antagonistic behaviour between viral strains, as well as different types of host recovery. We show that not only viral attributes but also the propagating component of RNA-interference in plants can play an important role in determining the dynamics.

A bean cDNA expressed during a hypersensitive reaction encodes a putative calcium-binding protein

The hypersensitive reaction (HR) is an inducible plant response that is associated with disease resistance. It is characterized by rapid, localized cell death at the site of infection and is believed to inhibit the spread of invading pathogens. We have isolated a cDNA clone, designated Hra32 (for hypersensitive reaction associated), corresponding to an RNA transcript that accumulates in bean during an HR. The predicted protein product of the Hra32 cDNA is an approximately 17 kDa protein of 161 amino acids, with four putative EF-hand calcium-binding domains. The temporal pattern of Hra32 transcript accumulation correlated closely with the onset of the HR in bean after inoculation with incompatible Pseudomonas syringae pv. tabaci and pv. tomato and with tobacco necrosis virus. Hra32 transcript also accumulated in bean in response to compatible P. syringae pv. phaseolicola and was correlated with necrotic cell death associated with disease lesion formation. A more transient pattern of Hra32 transcript accumulation occurred in bean in response to general stimuli that did not result in the HR or host cell death. These treatments included infiltration with a P. syringae pv. tabaci Hrp- mutant, P. syringae pv. tabaci cells treated with kanamycin, Escherichia coli, P. fluorescens, or glutathione, and in response to wounding. Thus, there was differential accumulation of the Hra32 transcript in response to specific stimuli resulting in the HR, compared with general stimuli that did not result in cell death. We hypothesize that the Hra32 product may be a component of the pathway that leads to hypersensitive cell death.

Tansley Review No. 86 Accumulation of phytoalexins: defence mechanism and stimulus response system

Phytoalexin synthesis is a defence-response- that is characterized by a requirement for a number of distinct elements, all of which must be present for the response to be expressed fully. These same elements: a signal, a cellular receptor, a signal transduction system and a responsive metabolic system, are also used to describe a stimulus-response system. A number of molecular species can function as signal molecules or elicitors of phytoalexin synthesis, including poly- and oligosaccharides, proteins and polypeptides, and fatty acids. Few receptors for elicitors have been identified but those that have been are proteins located on the plasma membrane of the plant. Induction of phytoalexin synthesis involves selective and co-ordinated activation of specific defence response genes, including those encoding the enzymes of phytoalexin synthesis, and these genes constitute the responsive metabolic system. The separate, and distant, locations of the receptor and the responsive genes means that the event in which the signal is perceived by the receptor must be relayed to the genes by means of a second messenger system. Several second messengers are candidates for such a coupling- or signal transduction-system, including udenosine-3',5'-cyclic monophosphate, Ca²⁺ , diacylglycerol and inositol 1,4,5-trisphosphate, active oxygen species and jasmonic acid. Each has been examined as a possible component of the signal transduction system mediating between the elicitor receptor interaction and the phytoalexin synthesis it induces. Analysis of the signalling events is made complex by the simultaneous solicitation by the invading micro-organism of several defence responses, each of which might involve elements of a different signal system. The same complexity is evident which the role of phytoalexin accumulation in resistance is analysed. Evaluation of the contribution made by phytoalexin accumulation towards resistance has been attempted by the use of various inhibitors and enhancers of the process. Transgenic and mutant plants with specific alterations in one or more ot those elements necessary for the plant to respond to the signals for phytoalexin synthesis and other defence responses, are beginning to aid resolution of the complex pattern ot signalling events and the respective roles of the inducible defence mechanisms in resistance. CONTENTS Summary 1 I. Introduction 2 II. Chemistry of phytoalexins 3 III. Phytoalexin accumulation as a determinant of resistance 6 IV. Elicitation of phytoalexin accumulation 11 References 34.