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For: Iyer-biswas S, Zilman A. First-Passage Processes in Cellular Biology. Advances in Chemical Physics 2016. [DOI: 10.1002/9781119165156.ch5] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Number Cited by Other Article(s)
1
Ziegler KF, Joshi K, Wright CS, Roy S, Caruso W, Biswas RR, Iyer-Biswas S. Scaling of stochastic growth and division dynamics: A comparative study of individual rod-shaped cells in the Mother Machine and SChemostat platforms. Mol Biol Cell 2024;35:ar78. [PMID: 38598301 PMCID: PMC11238078 DOI: 10.1091/mbc.e23-11-0452] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 03/15/2024] [Accepted: 04/01/2024] [Indexed: 04/12/2024]  Open
2
Bebon R, Godec A. Controlling Uncertainty of Empirical First-Passage Times in the Small-Sample Regime. PHYSICAL REVIEW LETTERS 2023;131:237101. [PMID: 38134782 DOI: 10.1103/physrevlett.131.237101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 10/18/2023] [Accepted: 10/31/2023] [Indexed: 12/24/2023]
3
Nam KM, Gunawardena J. The linear framework II: using graph theory to analyse the transient regime of Markov processes. Front Cell Dev Biol 2023;11:1233808. [PMID: 38020901 PMCID: PMC10656611 DOI: 10.3389/fcell.2023.1233808] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Accepted: 10/02/2023] [Indexed: 12/01/2023]  Open
4
Cherayil BJ. Survival probabilities and first-passage distributions of self-propelled particles in spherical cavities. Phys Rev E 2023;108:054607. [PMID: 38115486 DOI: 10.1103/physreve.108.054607] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2023] [Accepted: 11/05/2023] [Indexed: 12/21/2023]
5
Rivoire O. How Flexibility Can Enhance Catalysis. PHYSICAL REVIEW LETTERS 2023;131:088401. [PMID: 37683166 DOI: 10.1103/physrevlett.131.088401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2022] [Accepted: 07/28/2023] [Indexed: 09/10/2023]
6
Guo S, Saha I, Saffarian S, Johnson ME. Structure of the HIV immature lattice allows for essential lattice remodeling within budded virions. eLife 2023;12:e84881. [PMID: 37435945 PMCID: PMC10361719 DOI: 10.7554/elife.84881] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/12/2022] [Accepted: 07/12/2023] [Indexed: 07/13/2023]  Open
7
Di Trapani F, Franosch T, Caraglio M. Active Brownian particles in a circular disk with an absorbing boundary. Phys Rev E 2023;107:064123. [PMID: 37464643 DOI: 10.1103/physreve.107.064123] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2023] [Accepted: 04/27/2023] [Indexed: 07/20/2023]
8
Hass JB, Carroll-Godfrey AN, Corwin I, Corwin EI. Anomalous fluctuations of extremes in many-particle diffusion. Phys Rev E 2023;107:L022101. [PMID: 36932551 DOI: 10.1103/physreve.107.l022101] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2022] [Accepted: 01/12/2023] [Indexed: 06/18/2023]
9
Nagel AM, Magill M, de Haan HW. Studying first passage problems using neural networks: A case study in the slit-well microfluidic device. Phys Rev E 2022;106:025311. [PMID: 36109883 DOI: 10.1103/physreve.106.025311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2022] [Accepted: 07/28/2022] [Indexed: 06/15/2023]
10
Microscale structural changes of individual fibrin fibers during fibrinolysis. Acta Biomater 2022;141:114-122. [PMID: 35007782 PMCID: PMC8898298 DOI: 10.1016/j.actbio.2022.01.006] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Revised: 12/31/2021] [Accepted: 01/04/2022] [Indexed: 02/06/2023]
11
Ali MZ, Brewster RC. Controlling gene expression timing through gene regulatory architecture. PLoS Comput Biol 2022;18:e1009745. [PMID: 35041641 PMCID: PMC8797265 DOI: 10.1371/journal.pcbi.1009745] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2021] [Revised: 01/28/2022] [Accepted: 12/08/2021] [Indexed: 11/17/2022]  Open
12
Sharpe DJ, Wales DJ. Numerical analysis of first-passage processes in finite Markov chains exhibiting metastability. Phys Rev E 2021;104:015301. [PMID: 34412280 DOI: 10.1103/physreve.104.015301] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Accepted: 05/29/2021] [Indexed: 12/19/2022]
13
Hoogenboom BW, Hough LE, Lemke EA, Lim RYH, Onck PR, Zilman A. Physics of the Nuclear Pore Complex: Theory, Modeling and Experiment. PHYSICS REPORTS 2021;921:1-53. [PMID: 35892075 PMCID: PMC9306291 DOI: 10.1016/j.physrep.2021.03.003] [Citation(s) in RCA: 36] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
14
Scher Y, Reuveni S. Unified Approach to Gated Reactions on Networks. PHYSICAL REVIEW LETTERS 2021;127:018301. [PMID: 34270310 DOI: 10.1103/physrevlett.127.018301] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2021] [Revised: 03/20/2021] [Accepted: 06/02/2021] [Indexed: 06/13/2023]
15
Mishra B, Johnson ME. Speed limits of protein assembly with reversible membrane localization. J Chem Phys 2021;154:194101. [PMID: 34240891 PMCID: PMC8131109 DOI: 10.1063/5.0045867] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2021] [Accepted: 04/26/2021] [Indexed: 12/15/2022]  Open
16
Ray S, Reuveni S. Resetting transition is governed by an interplay between thermal and potential energy. J Chem Phys 2021;154:171103. [PMID: 34241053 DOI: 10.1063/5.0049642] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
17
Smart M, Goyal S, Zilman A. Roles of phenotypic heterogeneity and microenvironment feedback in early tumor development. Phys Rev E 2021;103:032407. [PMID: 33862830 DOI: 10.1103/physreve.103.032407] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2020] [Accepted: 02/18/2021] [Indexed: 12/21/2022]
18
Paci G, Zheng T, Caria J, Zilman A, Lemke EA. Molecular determinants of large cargo transport into the nucleus. eLife 2020;9:e55963. [PMID: 32692309 PMCID: PMC7375812 DOI: 10.7554/elife.55963] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Accepted: 06/18/2020] [Indexed: 01/03/2023]  Open
19
Qiu B, Zhou T, Zhang J. Stochastic fluctuations in apoptotic threshold of tumour cells can enhance apoptosis and combat fractional killing. ROYAL SOCIETY OPEN SCIENCE 2020;7:190462. [PMID: 32257298 PMCID: PMC7062090 DOI: 10.1098/rsos.190462] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/19/2019] [Accepted: 01/20/2020] [Indexed: 06/11/2023]
20
Cao M, Qiu B, Zhou T, Zhang J. Control strategies for the timing of intracellular events. Phys Rev E 2020;100:062401. [PMID: 31962487 DOI: 10.1103/physreve.100.062401] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Indexed: 11/07/2022]
21
Ghosh S, Dutta A, Patra S, Sato J, Nishinari K, Chowdhury D. Biologically motivated asymmetric exclusion process: Interplay of congestion in RNA polymerase traffic and slippage of nascent transcript. Phys Rev E 2019;99:052122. [PMID: 31212543 DOI: 10.1103/physreve.99.052122] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2018] [Indexed: 02/03/2023]
22
Pal A, Eliazar I, Reuveni S. First Passage under Restart with Branching. PHYSICAL REVIEW LETTERS 2019;122:020602. [PMID: 30720306 DOI: 10.1103/physrevlett.122.020602] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2018] [Revised: 11/02/2018] [Indexed: 05/27/2023]
23
First passage events in biological systems with non-exponential inter-event times. Sci Rep 2018;8:15054. [PMID: 30305644 PMCID: PMC6180141 DOI: 10.1038/s41598-018-32961-7] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2018] [Accepted: 09/12/2018] [Indexed: 11/09/2022]  Open
24
Pal A, Reuveni S. First Passage under Restart. PHYSICAL REVIEW LETTERS 2017;118:030603. [PMID: 28157357 DOI: 10.1103/physrevlett.118.030603] [Citation(s) in RCA: 111] [Impact Index Per Article: 15.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2016] [Indexed: 05/27/2023]
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