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Hu J, Xue C, Chi KX, Wei J, Su Z, Chen Q, Ou Z, Chen S, Huang Z, Xu Y, Wei H, Liu Y, Shum PP, Chen GJ. Raman Spectral Feature Enhancement Framework for Complex Multiclassification Tasks. Anal Chem 2024. [PMID: 39704531 DOI: 10.1021/acs.analchem.4c03261] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2024]
Abstract
Raman spectroscopy enables label-free clinical diagnosis in a single step. However, identifying an individual carrying a specific disease from people with a multi-disease background is challenging. To address this, we developed a Raman spectral implicit feature augmentation with a Raman Intersection, Union, and Subtraction augmentation strategy (RIUS). RIUS expands the data set without requiring additional labeled data by leveraging set operations at the feature level, significantly enhancing model performance across various applications. On a challenging 30-class bacterial classification task, RIUS demonstrated a substantial improvement, increasing the accuracy of ResNet by 2.1% and that of SE-ResNet by 1.4%, achieving accuracies of 85.7% and 87.1%, respectively, on the Bacteria-ID-4 Data set, where RIUS improved ResNet and SE-ResNet accuracies by 13.6% and 14.5%, respectively, with only ten samples per category. When the sample size was reduced, accuracy gains increased to 31.7% and 38.3%, demonstrating the method's robustness across different sample volumes. Compared to basic augmentation, our method exhibited superior performance across various sample volumes and demonstrated exceptional adaptability to different levels of complexity. RIUS exhibited superior performance, particularly in complex settings. Moreover, cluster analysis validated the effectiveness of the implicit feature augmentation module and the consistency between theoretical design and experimental results. We further validated our approach using clinical serum samples from 70 breast cancer patients and 70 controls, achieving an AUC of 0.94 and a sensitivity of 92.9%. Our approach enhances the potential for precisely identifying diseases in complex settings and offers plug-and-play enhancement for existing classification models.
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Affiliation(s)
- Jiaqi Hu
- State Key Laboratory of Optical Fiber and Cable Manufacture Technology, Guangdong Key Laboratory of Integrated Optoelectronics Intellisense, Department of EEE, Southern University of Science and Technology, Shenzhen 518055, China
| | - Chenlong Xue
- State Key Laboratory of Optical Fiber and Cable Manufacture Technology, Guangdong Key Laboratory of Integrated Optoelectronics Intellisense, Department of EEE, Southern University of Science and Technology, Shenzhen 518055, China
| | - Ken Xiaokeng Chi
- Department of Nephrology, The First Affiliated Hospital of Fujian Medical University, Fuzhou 350009, China
- Department of Nephrology, Chaozhou People's Hospital, Chaozhou 521011, China
| | - Junyu Wei
- State Key Laboratory of Optical Fiber and Cable Manufacture Technology, Guangdong Key Laboratory of Integrated Optoelectronics Intellisense, Department of EEE, Southern University of Science and Technology, Shenzhen 518055, China
| | - Zhicheng Su
- Department of Nephrology, Chaozhou People's Hospital, Chaozhou 521011, China
- Medical College, Shantou University, Shantou 515000, China
| | - Qiuyue Chen
- The First Clinical Medical College, Guangdong Medical University, Zhanjiang 524023, China
- The Medical Laboratory, The People's Hospital of Baoan, Shenzhen 518000, China
| | - Ziyu Ou
- Department of Clinical Medicine, Medical College, Shantou University, Shantou 515041, China
- Transfusion Department, Shenzhen Second People's Hospital, Shenzhen 518000, China
| | - Shuxin Chen
- Department of Nephrology, Chaozhou People's Hospital, Chaozhou 521011, China
| | - Zhe Huang
- Department of Medical Laboratory, Chaozhou People's Hospital, Chaozhou 521011, China
| | - Yilin Xu
- The Clinical Medical College, Jining Medical University, Jining, Shandong 272067, China
| | - Haoyun Wei
- State Key Laboratory of Precision Measurement Technology & Instruments, Department of Precision Instrument, Tsinghua University, Beijing 100084, China
| | - Yanjun Liu
- State Key Laboratory of Optical Fiber and Cable Manufacture Technology, Guangdong Key Laboratory of Integrated Optoelectronics Intellisense, Department of EEE, Southern University of Science and Technology, Shenzhen 518055, China
| | - Perry Ping Shum
- State Key Laboratory of Optical Fiber and Cable Manufacture Technology, Guangdong Key Laboratory of Integrated Optoelectronics Intellisense, Department of EEE, Southern University of Science and Technology, Shenzhen 518055, China
| | - Gina Jinna Chen
- State Key Laboratory of Optical Fiber and Cable Manufacture Technology, Guangdong Key Laboratory of Integrated Optoelectronics Intellisense, Department of EEE, Southern University of Science and Technology, Shenzhen 518055, China
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Krishnan Nambudiri MK, Sujadevi VG, Poornachandran P, Murali Krishna C, Kanno T, Noothalapati H. Artificial Intelligence-Assisted Stimulated Raman Histology: New Frontiers in Vibrational Tissue Imaging. Cancers (Basel) 2024; 16:3917. [PMID: 39682107 DOI: 10.3390/cancers16233917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 11/16/2024] [Accepted: 11/18/2024] [Indexed: 12/18/2024] Open
Abstract
Frozen section biopsy, introduced in the early 1900s, still remains the gold standard methodology for rapid histologic evaluations. Although a valuable tool, it is labor-, time-, and cost-intensive. Other challenges include visual and diagnostic variability, which may complicate interpretation and potentially compromise the quality of clinical decisions. Raman spectroscopy, with its high specificity and non-invasive nature, can be an effective tool for dependable and quick histopathology. The most promising modality in this context is stimulated Raman histology (SRH), a label-free, non-linear optical process which generates conventional H&E-like images in short time frames. SRH overcomes limitations of conventional Raman scattering by leveraging the qualities of stimulated Raman scattering (SRS), wherein the energy gets transferred from a high-power pump beam to a probe beam, resulting in high-energy, high-intensity scattering. SRH's high resolution and non-requirement of preprocessing steps make it particularly suitable when it comes to intrasurgical histology. Combining SRH with artificial intelligence (AI) can lead to greater precision and less reliance on manual interpretation, potentially easing the burden of the overburdened global histopathology workforce. We review the recent applications and advances in SRH and how it is tapping into AI to evolve as a revolutionary tool for rapid histologic analysis.
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Affiliation(s)
| | - V G Sujadevi
- Centre for Internet Studies and Artificial Intelligence, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - Prabaharan Poornachandran
- Centre for Internet Studies and Artificial Intelligence, Amrita Vishwa Vidyapeetham, Amritapuri 690525, Kerala, India
| | - C Murali Krishna
- Chilakapati Laboratory, Advanced Centre for Treatment, Research and Education in Cancer (ACTREC), Tata Memorial Centre, Kharghar, Navi Mumbai 410210, Maharashtra, India
- Homi Bhabha National Institute, Training School Complex, Mumbai 400094, Maharashtra, India
| | - Takahiro Kanno
- Department of Oral and Maxillofacial Surgery, Shimane University Faculty of Medicine, Izumo 693-8501, Japan
| | - Hemanth Noothalapati
- Department of Biomedical Engineering, Chennai Institute of Technology, Chennai 600069, Tamil Nadu, India
- Department of Chemical Engineering, Indian Institute of Technology Hyderabad, Kandi, Sangareddy 502285, Telangana, India
- Faculty of Life and Environmental Sciences, Shimane University, Matsue 690-8504, Japan
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Kant K, Beeram R, Cao Y, Dos Santos PSS, González-Cabaleiro L, García-Lojo D, Guo H, Joung Y, Kothadiya S, Lafuente M, Leong YX, Liu Y, Liu Y, Moram SSB, Mahasivam S, Maniappan S, Quesada-González D, Raj D, Weerathunge P, Xia X, Yu Q, Abalde-Cela S, Alvarez-Puebla RA, Bardhan R, Bansal V, Choo J, Coelho LCC, de Almeida JMMM, Gómez-Graña S, Grzelczak M, Herves P, Kumar J, Lohmueller T, Merkoçi A, Montaño-Priede JL, Ling XY, Mallada R, Pérez-Juste J, Pina MP, Singamaneni S, Soma VR, Sun M, Tian L, Wang J, Polavarapu L, Santos IP. Plasmonic nanoparticle sensors: current progress, challenges, and future prospects. NANOSCALE HORIZONS 2024; 9:2085-2166. [PMID: 39240539 PMCID: PMC11378978 DOI: 10.1039/d4nh00226a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2024] [Accepted: 08/19/2024] [Indexed: 09/07/2024]
Abstract
Plasmonic nanoparticles (NPs) have played a significant role in the evolution of modern nanoscience and nanotechnology in terms of colloidal synthesis, general understanding of nanocrystal growth mechanisms, and their impact in a wide range of applications. They exhibit strong visible colors due to localized surface plasmon resonance (LSPR) that depends on their size, shape, composition, and the surrounding dielectric environment. Under resonant excitation, the LSPR of plasmonic NPs leads to a strong field enhancement near their surfaces and thus enhances various light-matter interactions. These unique optical properties of plasmonic NPs have been used to design chemical and biological sensors. Over the last few decades, colloidal plasmonic NPs have been greatly exploited in sensing applications through LSPR shifts (colorimetry), surface-enhanced Raman scattering, surface-enhanced fluorescence, and chiroptical activity. Although colloidal plasmonic NPs have emerged at the forefront of nanobiosensors, there are still several important challenges to be addressed for the realization of plasmonic NP-based sensor kits for routine use in daily life. In this comprehensive review, researchers of different disciplines (colloidal and analytical chemistry, biology, physics, and medicine) have joined together to summarize the past, present, and future of plasmonic NP-based sensors in terms of different sensing platforms, understanding of the sensing mechanisms, different chemical and biological analytes, and the expected future technologies. This review is expected to guide the researchers currently working in this field and inspire future generations of scientists to join this compelling research field and its branches.
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Affiliation(s)
- Krishna Kant
- CINBIO, Department of Physical Chemistry, Universidade de Vigo, 36310 Vigo, Spain.
- Department of Biotechnology, School of Engineering and Applied Sciences, Bennett University, Greater Noida, UP, India
| | - Reshma Beeram
- Advanced Centre of Research in High Energy Materials (ACRHEM), DRDO Industry Academia - Centre of Excellence (DIA-COE), University of Hyderabad, Hyderabad 500046, Telangana, India
| | - Yi Cao
- School of Mathematics and Physics, University of Science and Technology Beijing, Beijing 100083, P. R. China
| | - Paulo S S Dos Santos
- INESC TEC-Institute for Systems and Computer Engineering, Technology and Science, Rua Dr Alberto Frias, 4200-465 Porto, Portugal
| | | | - Daniel García-Lojo
- CINBIO, Department of Physical Chemistry, Universidade de Vigo, 36310 Vigo, Spain.
| | - Heng Guo
- Department of Biomedical Engineering, and Center for Remote Health Technologies and Systems, Texas A&M University, College Station, TX 77843, USA
| | - Younju Joung
- Department of Chemistry, Chung-Ang University, Seoul 06974, South Korea
| | - Siddhant Kothadiya
- Department of Chemical and Biological Engineering, Iowa State University, Ames, IA 50011, USA
- Nanovaccine Institute, Iowa State University, Ames, IA 50012, USA
| | - Marta Lafuente
- Department of Chemical & Environmental Engineering, Campus Rio Ebro, C/Maria de Luna s/n, 50018 Zaragoza, Spain
- Instituto de Nanociencia y Materiales de Aragón (INMA), CSIC-Universidad de Zaragoza, 50009 Zaragoza, Spain
| | - Yong Xiang Leong
- Division of Chemistry and Biological Chemistry, School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore 637371, Singapore
| | - Yiyi Liu
- Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Yuxiong Liu
- Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Sree Satya Bharati Moram
- Advanced Centre of Research in High Energy Materials (ACRHEM), DRDO Industry Academia - Centre of Excellence (DIA-COE), University of Hyderabad, Hyderabad 500046, Telangana, India
| | - Sanje Mahasivam
- Sir Ian Potter NanoBioSensing Facility, NanoBiotechnology Research Laboratory, School of Science, RMIT University, Melbourne, VIC 3000, Australia
| | - Sonia Maniappan
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Tirupati, Tirupati 517 507, India
| | - Daniel Quesada-González
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193, Barcelona, Spain
| | - Divakar Raj
- Department of Allied Sciences, School of Health Sciences and Technology, UPES, Dehradun, 248007, India
| | - Pabudi Weerathunge
- Sir Ian Potter NanoBioSensing Facility, NanoBiotechnology Research Laboratory, School of Science, RMIT University, Melbourne, VIC 3000, Australia
| | - Xinyue Xia
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
| | - Qian Yu
- Department of Chemistry, Chung-Ang University, Seoul 06974, South Korea
| | - Sara Abalde-Cela
- International Iberian Nanotechnology Laboratory (INL), 4715-330 Braga, Portugal
| | - Ramon A Alvarez-Puebla
- Department of Physical and Inorganic Chemistry, Universitat Rovira i Virgili, Tarragona, Spain
- ICREA-Institució Catalana de Recerca i Estudis Avançats, 08010, Barcelona, Spain
| | - Rizia Bardhan
- Department of Chemical and Biological Engineering, Iowa State University, Ames, IA 50011, USA
- Nanovaccine Institute, Iowa State University, Ames, IA 50012, USA
| | - Vipul Bansal
- Sir Ian Potter NanoBioSensing Facility, NanoBiotechnology Research Laboratory, School of Science, RMIT University, Melbourne, VIC 3000, Australia
| | - Jaebum Choo
- Department of Chemistry, Chung-Ang University, Seoul 06974, South Korea
| | - Luis C C Coelho
- INESC TEC-Institute for Systems and Computer Engineering, Technology and Science, Rua Dr Alberto Frias, 4200-465 Porto, Portugal
- FCUP, University of Porto, Rua do Campo Alegre, 4169-007 Porto, Portugal
| | - José M M M de Almeida
- INESC TEC-Institute for Systems and Computer Engineering, Technology and Science, Rua Dr Alberto Frias, 4200-465 Porto, Portugal
- Department of Physics, University of Trás-os-Montes e Alto Douro, 5001-801 Vila Real, Portugal
| | - Sergio Gómez-Graña
- CINBIO, Department of Physical Chemistry, Universidade de Vigo, 36310 Vigo, Spain.
| | - Marek Grzelczak
- Centro de Física de Materiales (CSIC-UPV/EHU) and Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 5, 20018 Donostia San-Sebastián, Spain
| | - Pablo Herves
- CINBIO, Department of Physical Chemistry, Universidade de Vigo, 36310 Vigo, Spain.
| | - Jatish Kumar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Tirupati, Tirupati 517 507, India
| | - Theobald Lohmueller
- Chair for Photonics and Optoelectronics, Nano-Institute Munich, Department of Physics, Ludwig-Maximilians-Universität (LMU), Königinstraße 10, 80539 Munich, Germany
| | - Arben Merkoçi
- Catalan Institute of Nanoscience and Nanotechnology (ICN2), CSIC and BIST, Campus UAB, Bellaterra, 08193, Barcelona, Spain
- Catalan Institution for Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, Barcelona, 08010, Spain
| | - José Luis Montaño-Priede
- Centro de Física de Materiales (CSIC-UPV/EHU) and Donostia International Physics Center (DIPC), Paseo Manuel de Lardizabal 5, 20018 Donostia San-Sebastián, Spain
| | - Xing Yi Ling
- Division of Chemistry and Biological Chemistry, School of Chemistry, Chemical Engineering and Biotechnology, Nanyang Technological University, Singapore 637371, Singapore
| | - Reyes Mallada
- Department of Chemical & Environmental Engineering, Campus Rio Ebro, C/Maria de Luna s/n, 50018 Zaragoza, Spain
- Instituto de Nanociencia y Materiales de Aragón (INMA), CSIC-Universidad de Zaragoza, 50009 Zaragoza, Spain
- Networking Research Center on Bioengineering, Biomaterials and Nanomedicine, CIBER-BBN, 28029 Madrid, Spain
| | - Jorge Pérez-Juste
- CINBIO, Department of Physical Chemistry, Universidade de Vigo, 36310 Vigo, Spain.
| | - María P Pina
- Department of Chemical & Environmental Engineering, Campus Rio Ebro, C/Maria de Luna s/n, 50018 Zaragoza, Spain
- Instituto de Nanociencia y Materiales de Aragón (INMA), CSIC-Universidad de Zaragoza, 50009 Zaragoza, Spain
- Networking Research Center on Bioengineering, Biomaterials and Nanomedicine, CIBER-BBN, 28029 Madrid, Spain
| | - Srikanth Singamaneni
- Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO, 63130, USA
| | - Venugopal Rao Soma
- Advanced Centre of Research in High Energy Materials (ACRHEM), DRDO Industry Academia - Centre of Excellence (DIA-COE), University of Hyderabad, Hyderabad 500046, Telangana, India
- School of Physics, University of Hyderabad, Hyderabad 500046, Telangana, India
| | - Mengtao Sun
- School of Mathematics and Physics, University of Science and Technology Beijing, Beijing 100083, P. R. China
| | - Limei Tian
- Department of Biomedical Engineering, and Center for Remote Health Technologies and Systems, Texas A&M University, College Station, TX 77843, USA
| | - Jianfang Wang
- Department of Physics, The Chinese University of Hong Kong, Shatin, Hong Kong SAR 999077, China
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Wang Z, Lin W, Luo C, Xue H, Wang T, Hu J, Huang Z, Fu D. Early diagnosis of thyroid-associated ophthalmopathy using label-free Raman spectroscopy and multivariate analysis. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 310:123905. [PMID: 38266604 DOI: 10.1016/j.saa.2024.123905] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Revised: 12/26/2023] [Accepted: 01/15/2024] [Indexed: 01/26/2024]
Abstract
Thyroid-associated ophthalmopathy (TAO) is the most common orbital disease in adults, with complex clinical manifestations and significant impacts on the life quality of patients. The current diagnosis of TAO lacks reliable biomarkers for early and non-invasive screening and detection, easily leading to poor prognosis. Therefore, it is essential to explore new methods for accurately predicting TAO development in its early stage. In this study, Raman spectroscopy, with non-destructive, label-free, and high-sensitivity characteristics, was used to analyze the differences in biochemical components of orbital adipocyte and tear samples between TAO and control groups. Furthermore, a multivariate analysis method (i.e., Principal Component Analysis-Linear Discriminant Analysis (PCA-LDA)) was applied for data processing and analysis. Compared with controls, PCA-LDA yielded TAO diagnostic accuracies of 72.7% and 75.0% using orbital adipocytes and tears, respectively. Our proof-of-concept results suggest that Raman spectroscopy holds potential for exploring the underlying pathogenesis of TAO, and its potential application in early screening of other thyroid-associated diseases can be further expanded.
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Affiliation(s)
- Zhihong Wang
- Department of Ophthalmology, Fujian Medical University Union Hospital, Fuzhou 350001, China
| | - Weiming Lin
- Key Laboratory of Opto-Electronic Science and Technology for Medicine of Ministry of Education, Fujian Provincial Key Laboratory for Photonics Technology, Fujian Normal University, Fuzhou 350117, China
| | - Chenyu Luo
- Department of Ophthalmology, Fujian Medical University Union Hospital, Fuzhou 350001, China
| | - Honghua Xue
- Department of Ophthalmology, Fujian Medical University Union Hospital, Fuzhou 350001, China
| | - Tingyin Wang
- Key Laboratory of Opto-Electronic Science and Technology for Medicine of Ministry of Education, Fujian Provincial Key Laboratory for Photonics Technology, Fujian Normal University, Fuzhou 350117, China
| | - Jianzhang Hu
- Department of Ophthalmology, Fujian Medical University Union Hospital, Fuzhou 350001, China
| | - Zufang Huang
- Key Laboratory of Opto-Electronic Science and Technology for Medicine of Ministry of Education, Fujian Provincial Key Laboratory for Photonics Technology, Fujian Normal University, Fuzhou 350117, China.
| | - Desheng Fu
- Department of Ophthalmology, Fujian Medical University Union Hospital, Fuzhou 350001, China.
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