1
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Pawar H, Rymbekova A, Cuadros-Espinoza S, Huang X, de Manuel M, van der Valk T, Lobon I, Alvarez-Estape M, Haber M, Dolgova O, Han S, Esteller-Cucala P, Juan D, Ayub Q, Bautista R, Kelley JL, Cornejo OE, Lao O, Andrés AM, Guschanski K, Ssebide B, Cranfield M, Tyler-Smith C, Xue Y, Prado-Martinez J, Marques-Bonet T, Kuhlwilm M. Ghost admixture in eastern gorillas. Nat Ecol Evol 2023; 7:1503-1514. [PMID: 37500909 PMCID: PMC10482688 DOI: 10.1038/s41559-023-02145-2] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 06/30/2023] [Indexed: 07/29/2023]
Abstract
Archaic admixture has had a substantial impact on human evolution with multiple events across different clades, including from extinct hominins such as Neanderthals and Denisovans into modern humans. In great apes, archaic admixture has been identified in chimpanzees and bonobos but the possibility of such events has not been explored in other species. Here, we address this question using high-coverage whole-genome sequences from all four extant gorilla subspecies, including six newly sequenced eastern gorillas from previously unsampled geographic regions. Using approximate Bayesian computation with neural networks to model the demographic history of gorillas, we find a signature of admixture from an archaic 'ghost' lineage into the common ancestor of eastern gorillas but not western gorillas. We infer that up to 3% of the genome of these individuals is introgressed from an archaic lineage that diverged more than 3 million years ago from the common ancestor of all extant gorillas. This introgression event took place before the split of mountain and eastern lowland gorillas, probably more than 40 thousand years ago and may have influenced perception of bitter taste in eastern gorillas. When comparing the introgression landscapes of gorillas, humans and bonobos, we find a consistent depletion of introgressed fragments on the X chromosome across these species. However, depletion in protein-coding content is not detectable in eastern gorillas, possibly as a consequence of stronger genetic drift in this species.
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Affiliation(s)
- Harvinder Pawar
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain
| | - Aigerim Rymbekova
- Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria
- Human Evolution and Archaeological Sciences (HEAS), University of Vienna, Wien, Austria
| | | | - Xin Huang
- Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria
- Human Evolution and Archaeological Sciences (HEAS), University of Vienna, Wien, Austria
| | - Marc de Manuel
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain
| | - Tom van der Valk
- Department of Bioinformatics and Genetics, Scilifelab, Swedish Museum of Natural History, Stockholm, Sweden
- Centre for Palaeogenetics, Stockholm, Sweden
| | - Irene Lobon
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain
| | | | - Marc Haber
- Institute of Cancer and Genomic Sciences, University of Birmingham, Dubai, United Arab Emirates
| | - Olga Dolgova
- Integrative Genomics Lab, CIC bioGUNE-Centro de Investigación Cooperativa en Biociencias, Parque Científico Tecnológico de Bizkaia building 801A, Derio, Spain
| | - Sojung Han
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain
- Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria
- Human Evolution and Archaeological Sciences (HEAS), University of Vienna, Wien, Austria
| | | | - David Juan
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain
| | - Qasim Ayub
- Wellcome Sanger Institute, Hinxton, UK
- Monash University Malaysia Genomics Facility, School of Science, Monash University Malaysia, Selangor Darul Ehsan, Malaysia
| | | | - Joanna L Kelley
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, USA
| | - Omar E Cornejo
- Department of Ecology and Evolutionary Biology, University of California, Santa Cruz, CA, USA
| | - Oscar Lao
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain
| | - Aida M Andrés
- UCL Genetics Institute, Department of Genetics, Evolution and Environment, University College London, London, UK
| | - Katerina Guschanski
- Animal Ecology, Department of Ecology and Genetics, Uppsala University, Uppsala, Sweden
- Institute of Ecology and Evolution, School of Biological Sciences, University of Edinburgh, Edinburgh, UK
- Science for Life Laboratory, Uppsala, Sweden
| | | | - Mike Cranfield
- Gorilla Doctors, Karen C. Drayer Wildlife Health Center, One Health Institute, University of California Davis, School of Veterinary Medicine, Davis, CA, USA
| | | | - Yali Xue
- Wellcome Sanger Institute, Hinxton, UK
| | - Javier Prado-Martinez
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain
- Wellcome Sanger Institute, Hinxton, UK
| | - Tomas Marques-Bonet
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.
- Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, Barcelona, Spain.
- CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain.
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, Barcelona, Spain.
| | - Martin Kuhlwilm
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, Barcelona, Spain.
- Department of Evolutionary Anthropology, University of Vienna, Vienna, Austria.
- Human Evolution and Archaeological Sciences (HEAS), University of Vienna, Wien, Austria.
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2
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Alvarez-Estape M, Pawar H, Fontsere C, Trujillo AE, Gunson JL, Bergl RA, Bermejo M, Linder JM, McFarland K, Oates JF, Sunderland-Groves JL, Orkin J, Higham JP, Viaud-Martinez KA, Lizano E, Marques-Bonet T. Past Connectivity but Recent Inbreeding in Cross River Gorillas Determined Using Whole Genomes from Single Hairs. Genes (Basel) 2023; 14:743. [PMID: 36981014 PMCID: PMC10048488 DOI: 10.3390/genes14030743] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Revised: 03/14/2023] [Accepted: 03/15/2023] [Indexed: 03/22/2023] Open
Abstract
The critically endangered western gorillas (Gorilla gorilla) are divided into two subspecies: the western lowland (G. g. gorilla) and the Cross River (G. g. diehli) gorilla. Given the difficulty in sampling wild great ape populations and the small estimated size of the Cross River gorilla population, only one whole genome of a Cross River gorilla has been sequenced to date, hindering the study of this subspecies at the population level. In this study, we expand the number of whole genomes available for wild western gorillas, generating 41 new genomes (25 belonging to Cross River gorillas) using single shed hairs collected from gorilla nests. By combining these genomes with publicly available wild gorilla genomes, we confirm that Cross River gorillas form three population clusters. We also found little variation in genome-wide heterozygosity among them. Our analyses reveal long runs of homozygosity (>10 Mb), indicating recent inbreeding in Cross River gorillas. This is similar to that seen in mountain gorillas but with a much more recent bottleneck. We also detect past gene flow between two Cross River sites, Afi Mountain Wildlife Sanctuary and the Mbe Mountains. Furthermore, we observe past allele sharing between Cross River gorillas and the northern western lowland gorilla sites, as well as with the eastern gorilla species. This is the first study using single shed hairs from a wild species for whole genome sequencing to date. Taken together, our results highlight the importance of implementing conservation measures to increase connectivity among Cross River gorilla sites.
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Affiliation(s)
- Marina Alvarez-Estape
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, c/ del Dr. Aiguader 88, 08003 Barcelona, Spain
| | - Harvinder Pawar
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, c/ del Dr. Aiguader 88, 08003 Barcelona, Spain
| | - Claudia Fontsere
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, c/ del Dr. Aiguader 88, 08003 Barcelona, Spain
- Center for Evolutionary Hologenomics, The Globe Institute, University of Copenhagen, Øster Farimagsgade 5A, 1352 Copenhagen, Denmark
| | - Amber E. Trujillo
- Department of Anthropology, New York University, New York, NY 10003, USA
- New York Consortium in Evolutionary Primatology, New York, NY 10065, USA
| | - Jessica L. Gunson
- Department of Anthropology, New York University, New York, NY 10003, USA
- New York Consortium in Evolutionary Primatology, New York, NY 10065, USA
| | - Richard A. Bergl
- Conservation, Education and Science Department, North Carolina Zoo, Asheboro, NC 27205, USA
| | - Magdalena Bermejo
- SPAC Scientific Field Station Network, Hasso Plattner Foundation (HPF), 14467 Potsdam, Germany
- Department of Ecology and Environmental Sciences, University of Barcelona, 08028 Barcelona, Spain
| | - Joshua M. Linder
- Department of Anthropology, James Madison University, Harrisonburg, VA 22807, USA
| | | | - John F. Oates
- Department of Anthropology, Hunter College, City University of New York, New York, NY 10065, USA
| | | | - Joseph Orkin
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, c/ del Dr. Aiguader 88, 08003 Barcelona, Spain
- Department of Anthropology, Montreal University, Montreal, QC H3T 1N8, Canada
| | - James P. Higham
- Department of Anthropology, New York University, New York, NY 10003, USA
| | | | - Esther Lizano
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, c/ del Dr. Aiguader 88, 08003 Barcelona, Spain
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, Cerdanyola del Vallès, 08193 Barcelona, Spain
| | - Tomas Marques-Bonet
- Institute of Evolutionary Biology (UPF-CSIC), PRBB, c/ del Dr. Aiguader 88, 08003 Barcelona, Spain
- Institut Català de Paleontologia Miquel Crusafont, Universitat Autònoma de Barcelona, Edifici ICTA-ICP, Cerdanyola del Vallès, 08193 Barcelona, Spain
- Catalan Institution of Research and Advanced Studies (ICREA), Passeig de Lluís Companys, 23, 08010 Barcelona, Spain
- CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology, Baldiri i Reixac 4, 08028 Barcelona, Spain
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3
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McGrath K, Eriksen AB, García-Martínez D, Galbany J, Gómez-Robles A, Massey JS, Fatica LM, Glowacka H, Arbenz-Smith K, Muvunyi R, Stoinski TS, Cranfield MR, Gilardi K, Shalukoma C, de Merode E, Gilissen E, Tocheri MW, McFarlin SC, Heuzé Y. Facial asymmetry tracks genetic diversity among Gorilla subspecies. Proc Biol Sci 2022; 289:20212564. [PMID: 35193404 PMCID: PMC8864355 DOI: 10.1098/rspb.2021.2564] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Mountain gorillas are particularly inbred compared to other gorillas and even the most inbred human populations. As mountain gorilla skeletal material accumulated during the 1970s, researchers noted their pronounced facial asymmetry and hypothesized that it reflects a population-wide chewing side preference. However, asymmetry has also been linked to environmental and genetic stress in experimental models. Here, we examine facial asymmetry in 114 crania from three Gorilla subspecies using 3D geometric morphometrics. We measure fluctuating asymmetry (FA), defined as random deviations from perfect symmetry, and population-specific patterns of directional asymmetry (DA). Mountain gorillas, with a current population size of about 1000 individuals, have the highest degree of facial FA (explaining 17% of total facial shape variation), followed by Grauer gorillas (9%) and western lowland gorillas (6%), despite the latter experiencing the greatest ecological and dietary variability. DA, while significant in all three taxa, explains relatively less shape variation than FA does. Facial asymmetry correlates neither with tooth wear asymmetry nor increases with age in a mountain gorilla subsample, undermining the hypothesis that facial asymmetry is driven by chewing side preference. An examination of temporal trends shows that stress-induced developmental instability has increased over the last 100 years in these endangered apes.
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Affiliation(s)
- Kate McGrath
- State University of New York, College at Oneonta, Oneonta, NY 13820, USA,Univ. Bordeaux, CNRS, MC, PACEA, UMR 5199, 33615, Pessac, France,Center for the Advanced Study of Human Paleobiology, Department of Anthropology, The George Washington University, Washington, DC 20052, USA,Department of Anthropology, The Ohio State University, Columbus, OH, USA
| | | | - Daniel García-Martínez
- Physical Anthropology Unit, Department of Biodiversity, Ecology, and Evolution, Faculty of Biological Sciences, Complutense University of Madrid, Madrid, Spain
| | - Jordi Galbany
- Univ. Bordeaux, CNRS, MC, PACEA, UMR 5199, 33615, Pessac, France,Department of Clinical Psychology and Psychobiology, University of Barcelona, Passeig de la Vall d'Hebron 171, 08035 Barcelona, Spain
| | - Aida Gómez-Robles
- Department of Anthropology, University College London, 14 Taviton St, London WC1H 0BW, UK
| | - Jason S. Massey
- Department of Anatomy and Developmental Biology, Biomedicine Discovery Institute, Monash University, Clayton, Victoria 3800, Australia
| | - Lawrence M. Fatica
- Univ. Bordeaux, CNRS, MC, PACEA, UMR 5199, 33615, Pessac, France,Department of Physiological Sciences, University of Florida College of Veterinary Medicine, Gainesville, FL, USA
| | - Halszka Glowacka
- Department of Basic Medical Sciences, University of Arizona College of Medicine-Phoenix, Phoenix 85004, USA
| | - Keely Arbenz-Smith
- Department of Small Animal Clinical Sciences, Virginia-Maryland College of Veterinary Medicine, Virginia Tech, Blacksburg, VA 24061, USA
| | - Richard Muvunyi
- Department of Tourism and Conservation, Rwanda Development Board, Kigali, Rwanda
| | - Tara S. Stoinski
- The Dian Fossey Gorilla Fund International, Atlanta, GA 30315, USA
| | - Michael R. Cranfield
- Gorilla Doctors (MGVP, Inc.), Karen C. Drayer Wildlife Health Center, University of California Davis, Davis, CA 95616, USA
| | - Kirsten Gilardi
- Gorilla Doctors (MGVP, Inc.), Karen C. Drayer Wildlife Health Center, University of California Davis, Davis, CA 95616, USA
| | - Chantal Shalukoma
- Institut Congolais pour la Conservation de la Nature, Virunga National Park, Rumangabo, Democratic Republic of Congo
| | - Emmanuel de Merode
- Institut Congolais pour la Conservation de la Nature, Virunga National Park, Rumangabo, Democratic Republic of Congo
| | - Emmanuel Gilissen
- Department of African Zoology, Royal Museum for Central Africa, Tervuren, Belgium,Laboratory of Histology and Neuropathology, Université Libre de Bruxelles, Brussels, Belgium
| | - Matthew W. Tocheri
- Department of Anthropology, Lakehead University, Thunder Bay, Ontario, Canada P7B 5E1,Human Origins Program, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA,Australian Research Council Centre of Excellence for Australian Biodiversity and Heritage, University of Wollongong, Wollongong, New South Wales 2522, Australia
| | - Shannon C. McFarlin
- Univ. Bordeaux, CNRS, MC, PACEA, UMR 5199, 33615, Pessac, France,Human Origins Program, National Museum of Natural History, Smithsonian Institution, Washington, DC 20013, USA
| | - Yann Heuzé
- State University of New York, College at Oneonta, Oneonta, NY 13820, USA
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4
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Červená B, Hrazdilová K, Vallo P, Pafčo B, Fenyková T, Petrželková KJ, Todd A, Tagg N, Wangue N, Lux Hoppe EG, Moraes MFD, Lapera IM, de Souza Pollo A, de Albuquerque ACA, Modrý D. Diversity of Mammomonogamus (Nematoda: Syngamidae) in large African herbivores. Parasitol Res 2018; 117:1013-1024. [PMID: 29470712 DOI: 10.1007/s00436-018-5777-y] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Accepted: 01/22/2018] [Indexed: 11/30/2022]
Abstract
Four species of Mammomonogamus are known from large African herbivores. A recent study demonstrated that a single Mammomonogamus species was shared by both western lowland gorillas (Gorilla gorilla gorilla) and African forest elephants (Loxodonta cyclotis) in Central African Republic, suggesting lower species diversity than previously described in literature. We examined more than 500 fecal samples collected from sympatric African forest elephants, western lowland gorillas, and African forest buffaloes (Syncerus caffer nanus) at four study sites across Central Africa and examined them by coproscopic methods to detect Mammomonogamus eggs, which were found at three of the study sites. Subsequently, sequences of 18S rDNA, 28S rDNA, and cox1 amplified from individual eggs were analyzed. Phylogenetic analyses of both nuclear and mitochondrial DNA revealed two clades: one formed by sequences originating from Gabonese buffaloes and the other comprising gorillas and elephants. The gorilla-elephant clade was further differentiated depending on the locality. We show the existence of at least two distinct species of Mammomonogamus, M. loxodontis in elephants and gorillas and M. nasicola in buffaloes. The available information on Mammomonogamus in African herbivores is reviewed.
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Affiliation(s)
- Barbora Červená
- Department of Pathology and Parasitology, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Palackého tř. 1946/1, 612 42, Brno, Czech Republic.
| | - Kristýna Hrazdilová
- Central European Institute for Technology (CEITEC), University of Veterinary and Pharmaceutical Sciences, Palackého tř. 1946/1, 612 42, Brno, Czech Republic.,Department of Virology, Veterinary Research Institute, Hudcova 296/70, 621 00, Brno, Czech Republic
| | - Peter Vallo
- Institute of Vertebrate Biology, Czech Academy of Sciences, Květná 8, 603 65, Brno, Czech Republic.,Evolutionary Ecology and Conservation Genomics, University of Ulm, Albert Einstein Allee 11, 89069, Ulm, Germany
| | - Barbora Pafčo
- Department of Pathology and Parasitology, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Palackého tř. 1946/1, 612 42, Brno, Czech Republic
| | - Tereza Fenyková
- Department of Pathology and Parasitology, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Palackého tř. 1946/1, 612 42, Brno, Czech Republic
| | - Klára Judita Petrželková
- Institute of Vertebrate Biology, Czech Academy of Sciences, Květná 8, 603 65, Brno, Czech Republic.,Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, Czech Republic.,Liberec Zoo, Lidové sady 425/1, 460 01, Liberec, Czech Republic
| | - Angelique Todd
- WWF, Dzanga-Sangha Protected Areas, BP 1053, Bangui, Central African Republic
| | - Nikki Tagg
- Projet Grands Singes, Centre for Research and Conservation, Royal Zoological Society of Antwerp, Koningin Astridplein 20-26, 2018, Antwerpen, Belgium
| | | | - Estevam G Lux Hoppe
- Universidade Estadual Paulista-UNESP, Faculdade de Ciências Agrárias e Veterinárias, Câmpus de Jaboticabal, Via de Acesso Prof. Paulo Donato Castelane, S/N, Jaboticabal, SP, 14884-900, Brazil
| | - Marcela Figuerêdo Duarte Moraes
- Universidade Estadual Paulista-UNESP, Faculdade de Ciências Agrárias e Veterinárias, Câmpus de Jaboticabal, Via de Acesso Prof. Paulo Donato Castelane, S/N, Jaboticabal, SP, 14884-900, Brazil
| | - Ivan Moura Lapera
- Universidade Estadual Paulista-UNESP, Faculdade de Ciências Agrárias e Veterinárias, Câmpus de Jaboticabal, Via de Acesso Prof. Paulo Donato Castelane, S/N, Jaboticabal, SP, 14884-900, Brazil
| | - Andressa de Souza Pollo
- Universidade Estadual Paulista-UNESP, Faculdade de Ciências Agrárias e Veterinárias, Câmpus de Jaboticabal, Via de Acesso Prof. Paulo Donato Castelane, S/N, Jaboticabal, SP, 14884-900, Brazil
| | - Ana Cláudia Alexandre de Albuquerque
- Veterinary Medicine and Animal Science School, UNESP-São Paulo State University, Rua Prof. Doutor Walter Mauricio Correa, S/N, Botucatu, São Paulo, 18618-000, Brazil
| | - David Modrý
- Department of Pathology and Parasitology, Faculty of Veterinary Medicine, University of Veterinary and Pharmaceutical Sciences Brno, Palackého tř. 1946/1, 612 42, Brno, Czech Republic.,Central European Institute for Technology (CEITEC), University of Veterinary and Pharmaceutical Sciences, Palackého tř. 1946/1, 612 42, Brno, Czech Republic.,Institute of Parasitology, Biology Centre of the Czech Academy of Sciences, Branišovská 31, 370 05, České Budějovice, Czech Republic
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5
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Baas P, van der Valk T, Vigilant L, Ngobobo U, Binyinyi E, Nishuli R, Caillaud D, Guschanski K. Population-level assessment of genetic diversity and habitat fragmentation in critically endangered Grauer's gorillas. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2018; 165:565-575. [PMID: 29313894 DOI: 10.1002/ajpa.23393] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/31/2017] [Revised: 11/27/2017] [Accepted: 12/13/2017] [Indexed: 11/06/2022]
Abstract
OBJECTIVES The critically endangered Grauer's gorilla (Gorilla beringei graueri) has experienced an estimated 77% population decline within a single generation. Although crucial for informed conservation decisions, there is no clear understanding about population structure and distribution of genetic diversity across the species' highly fragmented range. We fill this gap by studying several core and peripheral Grauer's gorilla populations throughout their distribution range. MATERIALS AND METHODS We generated genetic profiles for a sampling of an unstudied population of Grauer's gorillas from within the species' core range at 13 autosomal microsatellite loci and combined them with previously published and newly generated data from four other Grauer's gorilla populations, two mountain gorilla populations, and one western lowland gorilla population. RESULTS In agreement with previous studies, the genetic diversity of Grauer's gorillas is intermediate, falling between western lowland and mountain gorillas. Among Grauer's gorilla populations, we observe lower genetic diversity and high differentiation in peripheral compared with central populations, indicating a strong effect of genetic drift and limited gene flow among small, isolated forest fragments. DISCUSSION Although genetically less diverse, peripheral populations are frequently essential for the long-term persistence of a species and migration between peripheral and core populations may significantly enrich the overall species genetic diversity. Thus, in addition to central Grauer's gorilla populations from the core of the distribution range that clearly deserve conservation attention, we argue that conservation strategies aiming to ensure long-term species viability should include preserving peripheral populations and enhancing habitat connectivity.
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Affiliation(s)
- Pauline Baas
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden
| | - Tom van der Valk
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden
| | - Linda Vigilant
- Primatology Department, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, Germany
| | - Urbain Ngobobo
- Dian Fossey Gorilla Fund International, 800 Cherokee Avenue, Atlanta, Georgia
| | - Escobar Binyinyi
- Dian Fossey Gorilla Fund International, 800 Cherokee Avenue, Atlanta, Georgia
| | - Radar Nishuli
- Institut Congolais pour la Conservation de la Nature, N4, Réserve de Faune à Okapis, Democratic Republic of Congo
| | - Damien Caillaud
- Dian Fossey Gorilla Fund International, 800 Cherokee Avenue, Atlanta, Georgia.,Department of Anthropology, University of California, Davis, One Shields Ave, Davis, California
| | - Katerina Guschanski
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Uppsala, Sweden
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6
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Tocheri MW, Dommain R, McFarlin SC, Burnett SE, Troy Case D, Orr CM, Roach NT, Villmoare B, Eriksen AB, Kalthoff DC, Senck S, Assefa Z, Groves CP, Jungers WL. The evolutionary origin and population history of the grauer gorilla. AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2016; 159:S4-S18. [DOI: 10.1002/ajpa.22900] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2015] [Revised: 11/10/2015] [Accepted: 11/10/2015] [Indexed: 01/12/2023]
Affiliation(s)
- Matthew W. Tocheri
- Department of AnthropologyLakehead UniversityThunder Bay OntarioP7B 5E1 Canada
- Human Origins Program, National Museum of Natural History, Smithsonian InstitutionWashington, DC20013 USA
| | - René Dommain
- Human Origins Program, National Museum of Natural History, Smithsonian InstitutionWashington, DC20013 USA
| | - Shannon C. McFarlin
- Department of Anthropology and Center for the Advanced Study of Hominid PaleobiologyThe George Washington UniversityWashington, DC20052 USA
- Division of Mammals, National Museum of Natural HistorySmithsonian InstitutionWashington, DC20013 USA
| | - Scott E. Burnett
- Department of AnthropologyEckerd CollegeSt Petersburg FL33711 USA
| | - D. Troy Case
- Department of Sociology and AnthropologyNorth Carolina State UniversityRaleigh NC27695 USA
| | - Caley M. Orr
- Department of Cell and Developmental BiologyUniversity of Colorado School of MedicineAurora CO80045 USA
| | - Neil T. Roach
- Department of Human Evolutionary BiologyHarvard UniversityCambridge, MA02138
- Division of AnthropologyAmerican Museum of Natural HistoryNew York, NY10024 USA
| | - Brian Villmoare
- Department of AnthropologyUniversity of Nevada Las VegasLas Vegas NV89154 USA
- Department of AnthropologyUniversity College LondonLondonWC1H 0BW UK
| | - Amandine B. Eriksen
- Department of AnthropologyThe State University of New YorkBuffalo NY14260 USA
| | | | - Sascha Senck
- Fakultät für Technik und Umweltwissenschaften, University of Applied Sciences Upper AustriaWels4600 Austria
| | - Zelalem Assefa
- Human Origins Program, National Museum of Natural History, Smithsonian InstitutionWashington, DC20013 USA
| | - Colin P. Groves
- School of Archaeology and AnthropologyAustralian National UniversityCanberraACT 0200 Australia
| | - William L. Jungers
- Department of Anatomical SciencesStony Brook University Medical CenterStony Brook NY11794 USA
- Association VahatraBP3972 Madagascar
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7
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Hans JB, Haubner A, Arandjelovic M, Bergl RA, Fünfstück T, Gray M, Morgan DB, Robbins MM, Sanz C, Vigilant L. Characterization of MHC class II B polymorphism in multiple populations of wild gorillas using non-invasive samples and next-generation sequencing. Am J Primatol 2015; 77:1193-206. [PMID: 26283172 DOI: 10.1002/ajp.22458] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2015] [Revised: 07/08/2015] [Accepted: 08/03/2015] [Indexed: 01/03/2023]
Abstract
Genes encoded by the major histocompatibility complex (MHC) are crucial for the recognition and presentation of antigens to the immune system. In contrast to their closest relatives, chimpanzees and humans, much less is known about variation in gorillas at these loci. This study explored the exon 2 variation of -DPB1, -DQB1, and -DRB genes in 46 gorillas from four populations while simultaneously evaluating the feasibility of using fecal samples for high-throughput MHC genotyping. By applying strict similarity- and frequency-based analysis, we found, despite our modest sample size, a total of 18 alleles that have not been described previously, thereby illustrating the potential for efficient and highly accurate MHC genotyping from non-invasive DNA samples. We emphasize the importance of controlling for multiple potential sources of error when applying this massively parallel short-read sequencing technology to PCR products generated from low concentration DNA extracts. We observed pronounced differences in MHC variation between species, subspecies and populations that are consistent with both the ancient and recent demographic histories experienced by gorillas.
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Affiliation(s)
- Jörg B Hans
- Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Anne Haubner
- Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Mimi Arandjelovic
- Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | - Richard A Bergl
- North Carolina Zoological Park, Asheboro, North Carolina, USA
| | | | - Maryke Gray
- International Gorilla Conservation Program, Kigali, Rwanda
| | | | - Martha M Robbins
- Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
| | | | - Linda Vigilant
- Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany
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