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Hennessy J, McGorman B, Molphy Z, Farrell NP, Singleton D, Brown T, Kellett A. A Click Chemistry Approach to Targeted DNA Crosslinking with
cis
‐Platinum(II)‐Modified Triplex‐Forming Oligonucleotides. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202110455] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Joseph Hennessy
- School of Chemical Sciences and National Institute for Cellular Biotechnology Dublin City University, Glasnevin Dublin 9 Ireland
| | - Bríonna McGorman
- School of Chemical Sciences and National Institute for Cellular Biotechnology Dublin City University, Glasnevin Dublin 9 Ireland
| | - Zara Molphy
- School of Chemical Sciences and National Institute for Cellular Biotechnology Dublin City University, Glasnevin Dublin 9 Ireland
- Synthesis and Solid-State Pharmaceutical Centre School of Chemical Sciences Dublin City University, Glasnevin Dublin 9 Ireland
| | - Nicholas P. Farrell
- Department of Chemistry Virginia Commonwealth University Richmond VA 23284-2006 USA
| | - Daniel Singleton
- ATDBio Ltd. School of Chemistry University of Southampton Southampton SO17 1BJ UK
| | - Tom Brown
- ATDBio Ltd. School of Chemistry University of Southampton Southampton SO17 1BJ UK
- Chemistry Research Laboratory University of Oxford 12 Mansfield Road Oxford OX1 3TA UK
| | - Andrew Kellett
- School of Chemical Sciences and National Institute for Cellular Biotechnology Dublin City University, Glasnevin Dublin 9 Ireland
- Synthesis and Solid-State Pharmaceutical Centre School of Chemical Sciences Dublin City University, Glasnevin Dublin 9 Ireland
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Hennessy J, McGorman B, Molphy Z, Farrell NP, Singleton D, Brown T, Kellett A. A Click Chemistry Approach to Targeted DNA Crosslinking with cis-Platinum(II)-Modified Triplex-Forming Oligonucleotides. Angew Chem Int Ed Engl 2021; 61:e202110455. [PMID: 34652881 PMCID: PMC9299770 DOI: 10.1002/anie.202110455] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Revised: 10/11/2021] [Indexed: 01/05/2023]
Abstract
Limitations of clinical platinum(II) therapeutics include systemic toxicity and inherent resistance. Modern approaches, therefore, seek new ways to deliver active platinum(II) to discrete nucleic acid targets. In the field of antigene therapy, triplex‐forming oligonucleotides (TFOs) have attracted interest for their ability to specifically recognise extended duplex DNA targets. Here, we report a click chemistry based approach that combines alkyne‐modified TFOs with azide‐bearing cis‐platinum(II) complexes—based on cisplatin, oxaliplatin, and carboplatin motifs—to generate a library of PtII‐TFO hybrids. These constructs can be assembled modularly and enable directed platinum(II) crosslinking to purine nucleobases on the target sequence under the guidance of the TFO. By covalently incorporating modifications of thiazole orange—a known DNA‐intercalating fluorophore—into PtII‐TFOs constructs, enhanced target binding and discrimination between target and off‐target sequences was achieved.
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Affiliation(s)
- Joseph Hennessy
- School of Chemical Sciences and National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin, 9, Ireland
| | - Bríonna McGorman
- School of Chemical Sciences and National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin, 9, Ireland
| | - Zara Molphy
- School of Chemical Sciences and National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin, 9, Ireland.,Synthesis and Solid-State Pharmaceutical Centre, School of Chemical Sciences, Dublin City University, Glasnevin, Dublin, 9, Ireland
| | - Nicholas P Farrell
- Department of Chemistry, Virginia Commonwealth University, Richmond, VA, 23284-2006, USA
| | - Daniel Singleton
- ATDBio Ltd., School of Chemistry, University of Southampton, Southampton, SO17 1BJ, UK
| | - Tom Brown
- ATDBio Ltd., School of Chemistry, University of Southampton, Southampton, SO17 1BJ, UK.,Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford, OX1 3TA, UK
| | - Andrew Kellett
- School of Chemical Sciences and National Institute for Cellular Biotechnology, Dublin City University, Glasnevin, Dublin, 9, Ireland.,Synthesis and Solid-State Pharmaceutical Centre, School of Chemical Sciences, Dublin City University, Glasnevin, Dublin, 9, Ireland
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Ukale DU, Lönnberg T. 2,6‐Dimercuriphenol as a Bifacial Dinuclear Organometallic Nucleobase. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201809398] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
| | - Tuomas Lönnberg
- Department of ChemistryUniversity of Turku Vatselankatu 2 20014 Turku Finland
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Ukale DU, Lönnberg T. 2,6-Dimercuriphenol as a Bifacial Dinuclear Organometallic Nucleobase. Angew Chem Int Ed Engl 2018; 57:16171-16175. [PMID: 30358071 DOI: 10.1002/anie.201809398] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2018] [Revised: 10/11/2018] [Indexed: 11/07/2022]
Abstract
A C-nucleoside having 2,6-dimercuriphenol as the base moiety has been synthesized and incorporated into an oligonucleotide. NMR and UV melting experiments revealed the ability of this bifacial organometallic nucleobase surrogate to form stable dinuclear HgII -mediated base triples with adenine, cytosine, and thymine (or uracil) in solution as well as within a triple-helical oligonucleotide. A single HgII -mediated base triple between 2,6-dimercuriphenol and two thymines increased both Hoogsteen and Watson-Crick melting temperatures of a 15-mer pyrimidine⋅purine*pyrimidine triple helix by more than 10 °C relative to an unmodified triple helix of the same length. This novel binding mode could be exploited in targeting certain pathogenic nucleic acids as well as in DNA nanotechnology.
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Affiliation(s)
| | - Tuomas Lönnberg
- Department of Chemistry, University of Turku, Vatselankatu 2, 20014, Turku, Finland
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Abstract
Recent developments show encouraging results for the use of DNA as a construction material for nanometer-sized objects. Today, however, DNA-based molecular nanoarchitectures are constructed with mainly unmodified or at best end-modified oligonucleotides, thus shifting the development of functionalized DNA structures into the limelight. One of most recent developments in this direction is the substitution of the canonical Watson-Crick base pairs by metal complexes. In this way "metal-base pairs" are created, which could potentially impart magnetic or conductive properties to DNA-based nanostructures. This review summarizes research which started almost 45 years ago with the investigation of how metal ions interact with unmodified DNA and which recently culminated in the development of artificial ligand-like nucleobases so far able to coordinate up to ten metal ions inside a single DNA duplex in a programmable fashion.
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Affiliation(s)
- Guido H Clever
- Department of Chemistry and Biochemistry, Ludwig Maximilians University Munich, Butenandtstrasse 5-13, Haus F, 81377 Munich, Germany
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Schmidt KS, Boudvillain M, Schwartz A, van der Marel GA, van Boom JH, Reedijk J, Lippert B. Monofunctionally trans-diammine platinum(II)-modified peptide nucleic acid oligomers: a new generation of potential antisense drugs. Chemistry 2002; 8:5566-70. [PMID: 12458496 DOI: 10.1002/1521-3765(20021216)8:24<5566::aid-chem5566>3.0.co;2-#] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
A solid-phase approach is described that provides facile access to monofunctionally trans-PtII-modified PNA oligomers of arbitrary sequence for potential use both in antigene and antisense strategies. The approach includes the synthesis of a platinated building block 1 and its subsequent incorporation into three different PNA oligomers 5-7 by solid-phase synthesis. In a model cross-linking reaction one of the latter is found to recognize sequence-specifically a target oligonucleotide 8 and to cross-link to it. The resulting structure is the trans-PtII-cross-linked PNA/DNA duplex 9 as revealed by mass spectrometry in combination with a Maxam-Gilbert sequencing experiment.
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Affiliation(s)
- Kathrin S Schmidt
- Fachbereich Chemie, Universität Dortmund Otto-Hahn-Strasse 6, 44227 Dortmund, Germany
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Schmidt KS, Filippov DV, Meeuwenoord NJ, van der Marel GA, van Boom JH, Lippert B, Reedijk J. Solid-Phase Synthesis of a Monofunctionaltrans-a2PtII Complex Tethered to a Single-Stranded Oligonucleotide. Angew Chem Int Ed Engl 2000. [DOI: 10.1002/(sici)1521-3757(20000117)112:2<383::aid-ange383>3.0.co;2-f] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Berghoff U, Schmidt K, Janik M, Schröder G, Lippert B. Monofunctional trans-PtII(NH3)2 modification of pyrimidine-rich deoxyoligonucleotides: direct platination and use of a protective group. Inorganica Chim Acta 1998. [DOI: 10.1016/s0020-1693(97)05779-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Colombier C, Lippert B, Leng M. Interstrand cross-linking reaction in triplexes containing a monofunctional transplatin-adduct. Nucleic Acids Res 1996; 24:4519-24. [PMID: 8948644 PMCID: PMC146263 DOI: 10.1093/nar/24.22.4519] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Our aim was to determine whether a single transplatin monofunctional adduct, either trans-[Pt(NH3)2(dC)Cl]+ or trans-[Pt(NH3)2(dG)Cl]+ within a homopyrimidine oligonucleotide, could further react and form an interstrand cross-link once the platinated oligonucleotide was bound to the complementary duplex. The single monofunctional adduct was located at either the 5' end or in the middle of the platinated oligonucleotide. In all the triplexes, specific interstrand cross-links were formed between the platinated Hoogsteen strand and the complementary purine-rich strand. No interstrand cross-links were detected between the platinated oligonucleotides and non-complementary DNA. The yield and the rate of the cross-linking reaction depend upon the nature and location of the monofunctional adducts. Half-lives of the monofunctional adducts within the triplexes were in the range 2-6 h. The potential use of the platinated oligonucleotides to modulate gene expression is discussed.
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Affiliation(s)
- C Colombier
- Centre de Biophysique Moléculaire, CNRS, Orléans, France
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