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Nguyen HVL, Caminati W, Grabow JU. The LAM of the Rings: Large Amplitude Motions in Aromatic Molecules Studied by Microwave Spectroscopy. Molecules 2022; 27:3948. [PMID: 35745072 PMCID: PMC9230607 DOI: 10.3390/molecules27123948] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Revised: 05/27/2022] [Accepted: 06/06/2022] [Indexed: 11/17/2022] Open
Abstract
Large amplitude motions (LAMs) form a fundamental phenomenon that demands the development of specific theoretical and Hamiltonian models. In recent years, along with the strong progress in instrumental techniques on high-resolution microwave spectroscopy and computational capacity in quantum chemistry, studies on LAMs have become very diverse. Larger and more complex molecular systems have been taken under investigation, ranging from series of heteroaromatic molecules from five- and six-membered rings to polycyclic-aromatic-hydrocarbon derivatives. Such systems are ideally suited to create families of molecules in which the positions and the number of LAMs can be varied, while the heteroatoms often provide a sufficient dipole moment to the systems to warrant the observation of their rotational spectra. This review will summarize three types of LAMs: internal rotation, inversion tunneling, and ring puckering, which are frequently observed in aromatic five-membered rings such as furan, thiophene, pyrrole, thiazole, and oxazole derivatives, in aromatic six-membered rings such as benzene, pyridine, and pyrimidine derivatives, and larger combined rings such as naphthalene, indole, and indan derivatives. For each molecular class, we will present the representatives and summarize the recent insights on the molecular structure and internal dynamics and how they help to advance the field of quantum mechanics.
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Affiliation(s)
- Ha Vinh Lam Nguyen
- Univ Paris Est Creteil and Université Paris Cité, CNRS, LISA, F-94010 Créteil, France
- Institut Universitaire de France (IUF), F-75231 Paris, France
| | - Walther Caminati
- Departimento di Chimica ‘G. Ciamican’, Universita degli Studi di Bologna, Via Selmi 2, 40126 Bologna, Italy;
| | - Jens-Uwe Grabow
- Institut für Physikalische Chemie und Elektrochemie, Gottfried-Wilhelm-Leibniz-Universität Hannover, Callinstraße 3A, 30167 Hannover, Germany
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2
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Jin Y, Wang J, Gou Q, Xia Z, Feng G. Fluorination effect on conformational preferences of trifluorothioanisole. J Mol Struct 2018. [DOI: 10.1016/j.molstruc.2017.11.101] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Egidi F, Williams-Young DB, Baiardi A, Bloino J, Scalmani G, Frisch MJ, Li X, Barone V. Effective Inclusion of Mechanical and Electrical Anharmonicity in Excited Electronic States: VPT2-TDDFT Route. J Chem Theory Comput 2017; 13:2789-2803. [PMID: 28453287 DOI: 10.1021/acs.jctc.7b00218] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a reliable and cost-effective procedure for the inclusion of anharmonic effects in excited-state energies and spectroscopic intensities by means of second-order vibrational perturbation theory. This development is made possible thanks to a recent efficient implementation of excited-state analytic Hessians and properties within the time-dependent density functional theory framework. As illustrated in this work, by taking advantage of such algorithmic developments, it is possible to perform calculations of excited-state infrared spectra of medium-large isolated molecular systems, with anharmonicity effects included in both the energy and property surfaces. We also explore the use of this procedure for the inclusion of anharmonic effects in the simulation of vibronic bandshapes of electronic spectra and compare the results with previous, more approximate models.
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Affiliation(s)
- Franco Egidi
- Scuola Normale Superiore , Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - David B Williams-Young
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
| | - Alberto Baiardi
- Scuola Normale Superiore , Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Julien Bloino
- Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR) , UOS di Pisa, Area della Ricerca CNR, Via G. Moruzzi 1, Pisa 56124, Italy
| | - Giovanni Scalmani
- Gaussian, Inc. , 340 Quinnipiac St., Bldg. 40, Wallingford, Connecticut 06492, United States
| | - Michael J Frisch
- Gaussian, Inc. , 340 Quinnipiac St., Bldg. 40, Wallingford, Connecticut 06492, United States
| | - Xiaosong Li
- Department of Chemistry, University of Washington , Seattle, Washington 98195, United States
| | - Vincenzo Barone
- Scuola Normale Superiore , Piazza dei Cavalieri 7, 56126 Pisa, Italy
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Gottschalk HC, Altnöder J, Heger M, Suhm MA. Ringmethylierung kontrolliert die Wasserstoffbrücken-Andockstelle bei Anisol. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201508481] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Hannes C. Gottschalk
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
| | - Jonas Altnöder
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
| | - Matthias Heger
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
| | - Martin A. Suhm
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
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Gottschalk HC, Altnöder J, Heger M, Suhm MA. Control over the Hydrogen-Bond Docking Site in Anisole by Ring Methylation. Angew Chem Int Ed Engl 2015; 55:1921-4. [DOI: 10.1002/anie.201508481] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2015] [Revised: 10/31/2015] [Indexed: 11/06/2022]
Affiliation(s)
- Hannes C. Gottschalk
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
| | - Jonas Altnöder
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
| | - Matthias Heger
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
| | - Martin A. Suhm
- Institut für Physikalische Chemie; Georg-August-Universität Göttingen; Tammannstraße 6 37077 Göttingen Deutschland
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Gou Q, Feng G, Evangelisti L, Vallejo-López M, Spada L, Lesarri A, Cocinero EJ, Caminati W. How water interacts with halogenated anesthetics: the rotational spectrum of isoflurane-water. Chemistry 2014; 20:1980-4. [PMID: 24403206 DOI: 10.1002/chem.201303724] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2013] [Indexed: 11/07/2022]
Abstract
The rotational spectra of several isotopologues of the 1:1 complex between the inhaled anesthetic isoflurane and water have been recorded and analyzed by using Fourier transform microwave spectroscopy. The rotational spectrum showed a single rotamer, corresponding to the configuration in which the most stable conformer of isolated isoflurane is linked to the water molecule through an almost linear C-H⋅⋅⋅O weak hydrogen bond. All transitions display a hyperfine structure due to the (35)Cl (or (37)Cl) nuclear quadrupole effects.
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Affiliation(s)
- Qian Gou
- Department of Chemistry, University of Bologna, Via Selmi 2, 40126, Bologna (Italy), Fax: (+39) 0512099456
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Gou Q, Feng G, Evangelisti L, Caminati W. Lone-Pair⋅⋅⋅π Interaction: A Rotational Study of the Chlorotrifluoroethylene-Water Adduct. Angew Chem Int Ed Engl 2013. [DOI: 10.1002/ange.201306827] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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8
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Gou Q, Feng G, Evangelisti L, Caminati W. Lone-Pair⋅⋅⋅π Interaction: A Rotational Study of the Chlorotrifluoroethylene-Water Adduct. Angew Chem Int Ed Engl 2013; 52:11888-91. [DOI: 10.1002/anie.201306827] [Citation(s) in RCA: 46] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2013] [Revised: 08/22/2013] [Indexed: 11/10/2022]
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9
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Piccagli L, Fabbri E, Borgatti M, Bianchi N, Bezzerri V, Mancini I, Nicolis E, Dechecchi C, Lampronti I, Cabrini G, Gambari R. Virtual Screening against p50 NF-κB Transcription Factor for the Identification of Inhibitors of the NF-κB-DNA Interaction and Expression of NF-κB Upregulated Genes. ChemMedChem 2009; 4:2024-33. [DOI: 10.1002/cmdc.200900362] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
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Filsinger F, Wohlfart K, Schnell M, Grabow JU, Küpper J. Precise dipole moments and quadrupole coupling constants of the cis and trans conformers of 3-aminophenol: determination of the absolute conformation. Phys Chem Chem Phys 2008; 10:666-73. [DOI: 10.1039/b711888k] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Favero LB, Giuliano BM, Melandri S, Maris A, Caminati W. Noncovalent Interactions and Internal Dynamics in Dimethoxymethane–Water. Chemistry 2007; 13:5833-7. [PMID: 17455188 DOI: 10.1002/chem.200700076] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
The millimeter-wave absorption and Fourier transform microwave spectra of five isotopologues of the 1:1 adduct of dimethoxymethane-water have been measured in supersonic expansions. Each rotational transition appears as a quintuplet, due to the internal rotation of the two methyl groups, which are nonequivalent in the adduct. The water moiety, linked asymmetrically to dimethoxymethane, behaves as a proton donor to one of its oxygen atoms and interferes with the internal rotation of the farther methyl group through a C...HO interaction. From the analysis of the observed splittings, the V(3) barriers to the internal rotation of the two methyl groups have been determined to be 6.83(8) and 6.19(8) kJ mol(-1). The hydrogen bond structural parameters have been determined, the O...HO and C...HO distances being 1.93(1) and 2.78(4) A, respectively.
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Affiliation(s)
- Laura B Favero
- Istituto per lo Studio dei Materiali Nanostrutturati ISMN, Sezione di Bologna, CNR, Via Gobetti 101, 40129 Bologna, Italy
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Caminati W, Maris A, Dell'Erba A, Favero PG. Dynamical Behavior and Dipole–Dipole Interactions of Tetrafluoromethane–Water. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200602000] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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13
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Caminati W, Maris A, Dell'Erba A, Favero PG. Dynamical Behavior and Dipole–Dipole Interactions of Tetrafluoromethane–Water. Angew Chem Int Ed Engl 2006; 45:6711-4. [PMID: 16977658 DOI: 10.1002/anie.200602000] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Walther Caminati
- Dipartimento di Chimica G. Ciamician dell'Università, Via Selmi 2, 40126 Bologna, Italy.
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Caminati W, Melandri S, Maris A, Ottaviani P. Relative Strengths of the OH⋅⋅⋅Cl and OH⋅⋅⋅F Hydrogen Bonds. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200504486] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Caminati W, Melandri S, Maris A, Ottaviani P. Relative Strengths of the OH⋅⋅⋅Cl and OH⋅⋅⋅F Hydrogen Bonds. Angew Chem Int Ed Engl 2006; 45:2438-42. [PMID: 16521148 DOI: 10.1002/anie.200504486] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Walther Caminati
- Dipartimento di Chimica G. Ciamician dell'Università, Via Selmi 2, 40126 Bologna, Italy.
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