An Exceptionally Selective Lead(II)-Regulatory Protein fromRalstonia Metallidurans: Development of a Fluorescent Lead(II) Probe

Omics technology draws a comprehensive heavy metal resistance strategy in bacteria

The rapid industrial revolution significantly increased heavy metal pollution, becoming a major global environmental concern. This pollution is considered as one of the most harmful and toxic threats to all environmental components (air, soil, water, animals, and plants until reaching to human). Therefore, scientists try to find a promising and eco-friendly technique to solve this problem i.e., bacterial bioremediation. Various heavy metal resistance mechanisms were reported. Omics technologies can significantly improve our understanding of heavy metal resistant bacteria and their communities. They are a potent tool for investigating the adaptation processes of microbes in severe conditions. These omics methods provide unique benefits for investigating metabolic alterations, microbial diversity, and mechanisms of resistance of individual strains or communities to harsh conditions. Starting with genome sequencing which provides us with complete and comprehensive insight into the resistance mechanism of heavy metal resistant bacteria. Moreover, genome sequencing facilitates the opportunities to identify specific metal resistance genes, operons, and regulatory elements in the genomes of individual bacteria, understand the genetic mechanisms and variations responsible for heavy metal resistance within and between bacterial species in addition to the transcriptome, proteome that obtain the real expressed genes. Moreover, at the community level, metagenome, meta transcriptome and meta proteome participate in understanding the microbial interactive network potentially novel metabolic pathways, enzymes and gene species can all be found using these methods. This review presents the state of the art and anticipated developments in the use of omics technologies in the investigation of microbes used for heavy metal bioremediation.

Polydiacetylene-based colorimetric and fluorometric sensors for lead ion recognition

Development of novel sensors for the detection of lead ions (Pb2+) has attracted increasing interest due to their inherent toxic effects on human health and the environment. In this study, we describe two new polydiacetylene (PDA)-based liposome sensors for the colorimetric and fluorometric recognition of Pb2+ in aqueous solution. In the sensor system, a thymine-1-acetic acid (TAA) or orotic acid (OA) group was reasonably introduced into the diacetylene monomer to work as a strong binding site for Pb2+. The TAA- or OA-functionalized monomer and 10,12-pentacosadiynoic acid (PCDA) were incorporated into PDA liposomes in aqueous solution. After UV light-induced polymerization, deep blue colored liposome solutions were obtained. Upon the addition of a series of transition metal cations into the liposome solutions, only Pb2+ could induce a color change from blue to red observable by the naked eye and a large fluorescence enhancement. The results clearly showed that the PDA-EDEA-TAA and PDA-EDEA-OA liposomes could act as highly selective and sensitive probes to detect Pb2+ in aqueous solution. The detection limits of PDA-EDEA-TAA and PDA-EDEA-OA systems are 38 nM and 25 nM, respectively. The excellent selectivity of PDA liposomes could be attributed to the stronger complexation behavior of Pb2+ with TAA (or OA) and the carboxylic acid at the lipid-solution interface which could perturb the PDA conjugated backbone. In addition, the proposed sensors were successfully applied to detect trace amounts of Pb2+ in real water samples with excellent recovery, indicating that the developed method had a good accuracy and precision for the analysis of trace Pb2+ in practical samples.

Probing the propeller-like loops of DNA G-quadruplexes with looped-out 2-aminopurine for label-free switchable molecular sensing

We report a novel ligand-free signal readout mechanism for probing the propeller-like loops of DNA G-quadruplexes with looped-out 2-aminopurine.

Nanoporous Au-based chronocoulometric aptasensor for amplified detection of Pb(2+) using DNAzyme modified with Au nanoparticles

The authors herein described an amplified detection strategy employing nanoporous Au (NPG) and gold nanoparticles (AuNPs) to detect Pb(2+) ions in aqueous solution. The thiol modified Pb(2+)-specific DNAzyme was self-assembled onto the surface of the NPG modified electrode for hybridizing with the AuNPs labeled oligonucleotide and for forming the DNA double helix structure. Electrochemical signal, redox charge of hexaammineruthenium(III) chloride (RuHex), was measured by chronocoulometry. Taking advantage of amplification effects of the NPG electrode for increasing the reaction sites of capture probe and DNA-AuNPs complexes for bringing about the adsorption of large numbers of RuHex molecules, this electrochemical sensor could detect Pb(2+) quantitatively, in the range of 0.05-100nM, with a limit of detection as low as 0.012nM. Selectivity measurements revealed that the sensor was specific for Pb(2+) even with interference by high concentrations of other metal ions. This sensor was also used to detect Pb(2+) ions from samples of tap water, river water, and landfill leachate samples spiked with Pb(2+) ions, and the results showed good agreement with the found values determined by an atomic fluorescence spectrometer. This simple aptasensor represented a promising potential for on-site detecting Pb(2+) in drinking water.

Ultrasensitive electrochemical detection of UO22+ based on DNAzyme and isothermal enzyme-free amplification

A novel enzyme-free amplification biosensor for uranyl detection was developed based on UO₂²⁺-specific DNAzyme and a hybridization chain reaction.

The importance of stereochemically active lone pairs for influencing Pb(II) and As(III) protein binding

The toxicity of heavy metals, which is associated with the high affinity of the metals for thiolate rich proteins, constitutes a problem worldwide. However, despite this tremendous toxicity concern, the binding mode of As(III) and Pb(II) to proteins is poorly understood. To clarify the requirements for toxic metal binding to metalloregulatory sensor proteins such as As(III) in ArsR/ArsD and Pb(II) in PbrR or replacing Zn(II) in δ-aminolevulinc acid dehydratase (ALAD), we have employed computational and experimental methods examining the binding of these heavy metals to designed peptide models. The computational results show that the mode of coordination of As(III) and Pb(II) is greatly influenced by the steric bulk within the second coordination environment of the metal. The proposed basis of this selectivity is the large size of the ion and, most important, the influence of the stereochemically active lone pair in hemidirected complexes of the metal ion as being crucial. The experimental data show that switching a bulky leucine layer above the metal binding site by a smaller alanine residue enhances the Pb(II)  binding affinity by a factor of five, thus supporting experimentally the hypothesis of lone pair steric hindrance. These complementary approaches demonstrate the potential importance of a stereochemically active lone pair as a metal recognition mode in proteins and, specifically, how the second coordination sphere environment affects the affinity and selectivity of protein targets by certain toxic ions.

Development of a fluorescent Pb2+ sensor

A real turn-on: The emission intensity of heterocycle 1 increases upon binding to Pb(2+). Thus, 1 acts as a small-molecule "turn-on" fluorescent sensor for lead. The sensor is highly selective and is functional over a wide range of pH values.

Rapid and Effective Adsorption of Lead Ions on Fine Poly(phenylenediamine) Microparticles

Fine microparticles of poly(p-phenylenediamine) (PpPD) and poly(m-phenylenediamine) (PmPD) were directly synthesized by a facile oxidative precipitation polymerization and their strong ability to adsorb lead ions from aqueous solution was examined. It was found that the degree of adsorption of the lead ions depends on the pH, concentration, and temperature of the lead ion solution, as well as the contact time and microparticle dose. The adsorption data fit the Langmuir isotherm and the process obeyed pseudo-second-order kinetics. According to the Langmuir equation, the maximum adsorption capacities of lead ions onto PpPD and PmPD microparticles at 30 degrees C are 253.2 and 242.7 mg g(-1), respectively. The highest adsorptivity of lead ions is up to 99.8 %. The adsorption is very rapid with a loading half-time of only 2 min as well as initial adsorption rates of 95.24 and 83.06 mg g(-1) min(-1) on PpPD and PmPD particles, respectively. A series of batch experiment results showed that the PpPD microparticles possess an even stronger capability to adsorb lead ions than the PmPD microparticles, but the PmPD microparticles, with a more-quinoid-like structure, show a stronger dependence of lead-ion adsorption on the pH and temperature of the lead-ion solution. A possible adsorption mechanism through complexation between Pb(2+) ions and ==N-- groups on the macromolecular chains has been proposed. The powerful lead-ion adsorption on the microparticles makes them promising adsorbents for wastewater cleanup.