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Kumar Manda SL, Tripathi S, Ghoshal A, Ambule MD, Srivastava AK, Panda G. A Comparative Synthetic Strategy Perspective on α-Amino Acid- and Non-Amino Acid-Derived Synthons towards Total Syntheses of Selected Natural Macrolides. Chemistry 2020; 26:5131-5156. [PMID: 31846112 DOI: 10.1002/chem.201904564] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2019] [Revised: 11/19/2019] [Indexed: 12/29/2022]
Abstract
Macrocyclic alkaloids (macrolides) and cyclopeptides have an immense range of applications in drug discovery research because of their natural abundance and potential biological and physicochemical properties. Presently, more than 100 approved drugs or clinical drug candidates contain macrocyclic scaffolds as the biologically active component. This review provides an interesting perspective about the use of amino acid-derived chiral pools versus other methods derived from miscellaneous synthons towards the total synthesis of non-peptidic macrolides. The synthetic routes and the key strategies involved in the total syntheses of ten natural macrolides have been discussed. Both the amino acid-derived and non-amino acid-derived synthetic routes have been illustrated to present a comparative study between the two approaches.
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Affiliation(s)
- Srinivas Lavanya Kumar Manda
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Sector-10, Jankipuram Extension, Lucknow, 226031, India.,Chemical Sciences Division, Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India
| | - Shashank Tripathi
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Sector-10, Jankipuram Extension, Lucknow, 226031, India.,Chemical Sciences Division, Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India
| | - Anirban Ghoshal
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Sector-10, Jankipuram Extension, Lucknow, 226031, India.,Chemical Sciences Division, Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India
| | - Mayur D Ambule
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Sector-10, Jankipuram Extension, Lucknow, 226031, India.,Chemical Sciences Division, Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India
| | - Ajay Kumar Srivastava
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Sector-10, Jankipuram Extension, Lucknow, 226031, India.,Chemical Sciences Division, Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India
| | - Gautam Panda
- Division of Medicinal and Process Chemistry, CSIR-Central Drug Research Institute, Sector-10, Jankipuram Extension, Lucknow, 226031, India.,Chemical Sciences Division, Academy of Scientific and Innovative Research (AcSIR), New Delhi, 110025, India
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Varnava KG, Sarojini V. Making Solid-Phase Peptide Synthesis Greener: A Review of the Literature. Chem Asian J 2019; 14:1088-1097. [PMID: 30681290 DOI: 10.1002/asia.201801807] [Citation(s) in RCA: 56] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2018] [Revised: 01/24/2019] [Indexed: 11/07/2022]
Abstract
To date, the synthesis of peptides is concurrent with the production of enormous amounts of toxic waste. DMF, CH2 Cl2 , and NMP are three of the most toxic organic solvents used in chemical synthesis and are the most common solvents used for peptide synthesis. Additionally, concerns about the hepatotoxicity caused by exposure to DMF and from the toxic and allergenic nature of additives used in peptide synthesis necessitates the need for a green, environmentally friendly, and safer protocol for peptide synthesis. This review summarizes the current literature on green solid-phase peptide synthesis successes and challenges encountered. The review concludes with suggestions for future research towards a simple and efficient green peptide synthesis protocol.
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Affiliation(s)
- Kyriakos G Varnava
- School of Chemical Sciences, University of Auckland, Auckland, 1142, New Zealand
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Despras G, Hain J, Jaeschke SO. Photocontrol over Molecular Shape: Synthesis and Photochemical Evaluation of Glycoazobenzene Macrocycles. Chemistry 2017; 23:10838-10847. [DOI: 10.1002/chem.201701232] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2017] [Indexed: 12/19/2022]
Affiliation(s)
- Guillaume Despras
- Otto Diels Institute of Organic Chemistry; Christiana Albertina University of Kiel; Otto-Hahn-Platz 3/4 24118 Kiel Germany
| | - Julia Hain
- Otto Diels Institute of Organic Chemistry; Christiana Albertina University of Kiel; Otto-Hahn-Platz 3/4 24118 Kiel Germany
| | - Sven Ole Jaeschke
- Otto Diels Institute of Organic Chemistry; Christiana Albertina University of Kiel; Otto-Hahn-Platz 3/4 24118 Kiel Germany
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Wessjohann LA, Kreye O, Rivera DG. One‐Pot Assembly of Amino Acid Bridged Hybrid Macromulticyclic Cages through Multiple Multicomponent Macrocyclizations. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201610801] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Ludger A. Wessjohann
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Oliver Kreye
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products Research Faculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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Wessjohann LA, Kreye O, Rivera DG. One‐Pot Assembly of Amino Acid Bridged Hybrid Macromulticyclic Cages through Multiple Multicomponent Macrocyclizations. Angew Chem Int Ed Engl 2017; 56:3501-3505. [DOI: 10.1002/anie.201610801] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/04/2016] [Revised: 01/24/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Ludger A. Wessjohann
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Oliver Kreye
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
| | - Daniel G. Rivera
- Department of Bioorganic Chemistry Leibniz Institute of Plant Biochemistry Weinberg 3 06120 Halle/Saale Germany
- Center for Natural Products Research Faculty of Chemistry University of Havana Zapata y G 10400 La Habana Cuba
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Tzirakis MD, Alberti MN, Weissman H, Rybtchinski B, Diederich F. Enantiopure Laterally Functionalized Alleno-Acetylenic Macrocycles: Synthesis, Chiroptical Properties, and Self-Assembly in Aqueous Media. Chemistry 2014; 20:16070-3. [DOI: 10.1002/chem.201404941] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2014] [Indexed: 12/27/2022]
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Martí-Centelles V, Izquierdo MA, Burguete MI, Galindo F, Luis SV. Recognition of free tryptophan in water by synthetic pseudopeptides: fluorescence and thermodynamic studies. Chemistry 2014; 20:7465-78. [PMID: 24788579 DOI: 10.1002/chem.201304851] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2013] [Indexed: 11/10/2022]
Abstract
Pseudopeptidic receptors containing an acridine unit have been prepared and their fluorescence response to a series of amino acids was measured in water. Free amino acids, not protected either at the C or the N terminus, were used for this purpose. The prepared receptors display a selective response to tryptophan (Trp) versus the other assayed amino acids under acidic conditions. The macrocyclic nature of the receptor is important as the fluorescence quenching is higher for the macrocyclic compound than for the related open-chain receptor. Notably, under the experimental acidic conditions used, both the receptor and guest are fully protonated and positively charged; thus, the experimental results suggest the formation of supramolecular species that contain two positively charged organic molecular components in proximity stabilized through aromatic-aromatic interactions and a complex set of cation-anion-cation interactions. The selectivity towards Trp seems to be based on the existence of a strong association between the indole ring of the monocharged amino acid and the acridinium fragment of the triprotonated form of the receptor, which is established to be assisted by the interaction of the cationic moieties with hydrogen sulfate anions.
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Affiliation(s)
- Vicente Martí-Centelles
- Departamento de Química Inorgánica y Orgánica, Universitat Jaume I, Av. Sos Baynat, s/n, E-12071 Castellón (Spain), Fax: (+34) 964728214
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Xu L, Li Y, Li Y. Application of “Click” Chemistry to the Construction of Supramolecular Functional Systems. ASIAN J ORG CHEM 2014. [DOI: 10.1002/ajoc.201300245] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
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Yu Y, Bogliotti N, Tang J, Xie J. Synthesis and Properties of Carbohydrate-Based BODIPY-Functionalised Fluorescent Macrocycles. European J Org Chem 2013. [DOI: 10.1002/ejoc.201300953] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Kawai H, Utamura T, Motoi E, Takahashi T, Sugino H, Tamura M, Ohkita M, Fujiwara K, Saito T, Tsuji T, Suzuki T. Hydrindacene-Based Acetylenic Macrocycles with Horizontally and Vertically Ordered Functionality Arrays. Chemistry 2013; 19:4513-24. [DOI: 10.1002/chem.201200716] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2012] [Revised: 01/12/2013] [Indexed: 11/11/2022]
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Martí I, Rubio J, Bolte M, Burguete MI, Vicent C, Quesada R, Alfonso I, Luis SV. Tuning Chloride Binding, Encapsulation, and Transport by Peripheral Substitution of Pseudopeptidic Tripodal Small Cages. Chemistry 2012; 18:16728-41. [DOI: 10.1002/chem.201202182] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2012] [Indexed: 11/05/2022]
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Schwing K, Reyheller C, Schaly A, Kubik S, Gerhards M. Structural Analysis of an Isolated Cyclic Tetrapeptide and its Monohydrate by Combined IR/UV Spectroscopy. Chemphyschem 2011; 12:1981-8. [DOI: 10.1002/cphc.201001055] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2010] [Revised: 04/07/2011] [Indexed: 11/10/2022]
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Pellico D, Gómez-Gallego M, Ramírez-López P, Mancheño MJ, Sierra M, Torres M. The Sequential Building of Chiral Macrocyclic Bis-β-Lactams by Double Staudinger-Cu-Catalyzed Azide-Alkyne Cycloadditions. Chemistry 2010; 16:1592-600. [DOI: 10.1002/chem.200902685] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Schnopp M, Haberhauer G. Highly Selective Recognition of α-Chiral Primary Organoammonium Ions byC3-Symmetric Peptide Receptors. European J Org Chem 2009. [DOI: 10.1002/ejoc.200900510] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Binauld S, Hawker C, Fleury E, Drockenmuller E. A Modular Approach to Functionalized and Expanded Crown Ether Based Macrocycles Using Click Chemistry. Angew Chem Int Ed Engl 2009; 48:6654-8. [DOI: 10.1002/anie.200903156] [Citation(s) in RCA: 85] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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16
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Binauld S, Hawker C, Fleury E, Drockenmuller E. A Modular Approach to Functionalized and Expanded Crown Ether Based Macrocycles Using Click Chemistry. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200903156] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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17
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Abell AD, Jones MA, Coxon JM, Morton JD, Aitken SG, McNabb SB, Lee HYY, Mehrtens JM, Alexander NA, Stuart BG, Neffe AT, Bickerstaffe R. Molecular modeling, synthesis, and biological evaluation of macrocyclic calpain inhibitors. Angew Chem Int Ed Engl 2009; 48:1455-8. [PMID: 19145612 DOI: 10.1002/anie.200805014] [Citation(s) in RCA: 59] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
The design and elaboration of a series of macrocyclic templates that exhibit a propensity to adopt a beta-strand-like peptide-backbone conformation led to potent and selective inhibitors of calpain 2. Macrocycle 1 retarded calcium-induced opacification in an ovine-lens culture assay and is a lead compound for the development of a drug for cataract treatment. Cbz=carbobenzyloxy.
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Affiliation(s)
- Andrew D Abell
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch, New Zealand
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Abell A, Jones M, Coxon J, Morton J, Aitken S, McNabb S, Lee H, Mehrtens J, Alexander N, Stuart B, Neffe A, Bickerstaffe R. Molecular Modeling, Synthesis, and Biological Evaluation of Macrocyclic Calpain Inhibitors. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200805014] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Andrew D. Abell
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
- Present address: School of Chemistry & Physics, The University of Adelaide, North Terrace, Adelaide, SA 5005 (Australia), Fax: (+61) 8‐8303‐4358
| | - Matthew A. Jones
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
| | - James M. Coxon
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
| | - James D. Morton
- Agriculture and Life Sciences Division, Lincoln University, Post Office Box 84, Canterbury (New Zealand), Fax: (+64) 3‐325‐3851
| | - Steven G. Aitken
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
| | - Stephen B. McNabb
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
| | - Hannah Y.‐Y. Lee
- Agriculture and Life Sciences Division, Lincoln University, Post Office Box 84, Canterbury (New Zealand), Fax: (+64) 3‐325‐3851
| | - Janna M. Mehrtens
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
| | - Nathan A. Alexander
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
| | - Blair G. Stuart
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
| | - Axel T. Neffe
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch (New Zealand)
- Present address: Institute of Polymer Research, GKSS Research, Centre Geesthacht GmbH, Kantstrasse 55, 14513 Teltow (Germany)
| | - Roy Bickerstaffe
- Agriculture and Life Sciences Division, Lincoln University, Post Office Box 84, Canterbury (New Zealand), Fax: (+64) 3‐325‐3851
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Alfonso I, Bolte M, Bru M, Burguete M, Luis S. Designed Folding of Pseudopeptides: The Transformation of a Configurationally Driven Preorganization into a Stereoselective Multicomponent Macrocyclization Reaction. Chemistry 2008; 14:8879-8891. [DOI: 10.1002/chem.200800726] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Abstract
In the last few years dipeptides with two hydrophobic residues (hydrophobic dipeptides) have emerged as an unexpected source of stable microporous organic materials. Supramolecular self-assembly of the rather small building blocks is dictated by stringent demands on the hydrogen-bond formation by the peptide main chains and the aggregation of hydrophobic entities in the side chains. A systematic survey of structures derived from single-crystal X-ray diffraction studies has revealed the existence of two large classes of structures, differing in the dimensionality of the hydrogen-bonding patterns in the crystals and the nature of the channels. The present review summarizes the structural properties of the microporous dipeptides and discusses their potential applications.
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Affiliation(s)
- Carl Henrik Görbitz
- University of Oslo, Department of Chemistry, P.O.Box 1033 Blindern, 0315 Oslo, Norway.
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Bru M, Alfonso I, Burguete MI, Luis SV. Anion-Templated Syntheses of Pseudopeptidic Macrocycles. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200602206] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Bru M, Alfonso I, Burguete MI, Luis SV. Anion-Templated Syntheses of Pseudopeptidic Macrocycles. Angew Chem Int Ed Engl 2006; 45:6155-9. [PMID: 16906618 DOI: 10.1002/anie.200602206] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Miriam Bru
- Departamento de Química Inorgánica y Orgánica, UAMOA, Universidad Jaume I/CSIC, Avd. Sos Baynat s/n, 12071 Castellón, Spain
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