1
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Zhang N, Bessel P, Wu C. Copper-Containing Artificial Polyenzymes as a Clickase for Bioorthogonal Chemistry. Bioconjug Chem 2022; 33:1892-1899. [PMID: 36194410 DOI: 10.1021/acs.bioconjchem.2c00363] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Artificial polyenzymes (ArPoly) are tailored combinations of universal protein scaffolds and polymers newly proposed as promising alternatives to natural enzymes to expand the biocatalyst toolbox. The concept of ArPoly has been continuously extended to metal-containing ArPoly to overcome the drawbacks faced by conventional artificial metalloenzymes. Herein, we present a sustainable route to synthesize a novel water-soluble metalloenzyme for copper-catalyzed azide-alkyne cycloadditions in water with remarkable selectivity. In this case, synthetic l-proline monomers were polymerized onto bovine serum albumen in an aqueous medium via copper-mediated "grafting-from" atom-transfer radical polymerization, resulting in protein-polymer-copper conjugates named ArPolyclickase. The copper in ArPolyclickase plays pivotal bifunctional roles, not only as the catalyst for polymerization but also as the coordinated active site for alkyne-azide click catalysis. ArPolyclickase showcases high efficiency, substrate generality, regioselectivity, and ease of product separation for "click chemistry" in water. Notably, ArPolyclickase displays good biocompatibility without imposing copper toxicity on living cells, which offers the prospect for the upcoming bioorthogonal chemistry.
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Affiliation(s)
- Ningning Zhang
- Institute of Microbiology, Technische Universität Dresden, Zellescher Weg 20b, 01217 Dresden, Germany.,Institute of Technical Chemistry, Leibniz University Hannover, Callinstraße 5, 30167 Hannover, Germany
| | - Patrick Bessel
- Institute of Physical Chemistry and Electrochemistry, Leibniz University Hannover, Callinstraße 5, 30167 Hannover, Germany
| | - Changzhu Wu
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark.,Danish Institute for Advanced Study (DIAS), University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark
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2
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Liu Y, Lai KL, Vong K. Transition Metal Scaffolds Used To Bring New‐to‐Nature Reactions into Biological Systems. Eur J Inorg Chem 2022. [DOI: 10.1002/ejic.202200215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Yifei Liu
- Department of Chemistry The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon Hong Kong China
| | - Ka Lun Lai
- Department of Chemistry The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon Hong Kong China
| | - Kenward Vong
- Department of Chemistry The Hong Kong University of Science and Technology, Clear Water Bay, Kowloon Hong Kong China
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3
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Brewster RC, Klemencic E, Jarvis AG. Palladium in biological media: Can the synthetic chemist's most versatile transition metal become a powerful biological tool? J Inorg Biochem 2020; 215:111317. [PMID: 33310459 DOI: 10.1016/j.jinorgbio.2020.111317] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2020] [Revised: 11/16/2020] [Accepted: 11/16/2020] [Indexed: 12/18/2022]
Abstract
Palladium catalysed reactions are ubiquitous in synthetic organic chemistry in both organic solvents and aqueous buffers. The broad reactivity of palladium catalysis has drawn interest as a means to conduct orthogonal transformations in biological settings. Successful examples have been shown for protein modification, in vivo drug decaging and as palladium-protein biohybrid catalysts for selective catalysis. Biological media represents a challenging environment for palladium chemistry due to the presence of a multitude of chelators, catalyst poisons and a requirement for milder reaction conditions e.g. lower temperatures. This review looks to identify successful examples of palladium-catalysed reactions in the presence of proteins or cells and analyse solutions to help to overcome the challenges of working in biological systems.
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Affiliation(s)
- Richard C Brewster
- EaStCHEM School of Chemistry, Joseph Black Building, David Brewster Rd, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
| | - Eva Klemencic
- EaStCHEM School of Chemistry, Joseph Black Building, David Brewster Rd, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom
| | - Amanda G Jarvis
- EaStCHEM School of Chemistry, Joseph Black Building, David Brewster Rd, University of Edinburgh, Edinburgh EH9 3FJ, United Kingdom.
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4
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Fischer J, Renn D, Quitterer F, Radhakrishnan A, Liu M, Makki A, Ghorpade S, Rueping M, Arold ST, Groll M, Eppinger J. Robust and Versatile Host Protein for the Design and Evaluation of Artificial Metal Centers. ACS Catal 2019. [DOI: 10.1021/acscatal.9b02896] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- Johannes Fischer
- Center for Integrated Protein Science, Department Chemie, Lehrstuhl für Biochemie, Technische Universität München (TUM), D-85747 Garching, Germany
| | - Dominik Renn
- Center for Integrated Protein Science, Department Chemie, Lehrstuhl für Biochemie, Technische Universität München (TUM), D-85747 Garching, Germany
| | - Felix Quitterer
- Center for Integrated Protein Science, Department Chemie, Lehrstuhl für Biochemie, Technische Universität München (TUM), D-85747 Garching, Germany
| | | | | | | | | | | | - Stefan T. Arold
- Centre de Biochimie Structurale, CNRS, INSERM, Université de Montpellier, 34090 Montpellier, France
| | - Michael Groll
- Center for Integrated Protein Science, Department Chemie, Lehrstuhl für Biochemie, Technische Universität München (TUM), D-85747 Garching, Germany
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5
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Pocquet L, Vologdin N, Mangiatordi GF, Ciofini I, Nicolotti O, Thorimbert S, Salmain M. Supramolecular Anchoring of NCN-Pincer Palladium Complexes into a β-Barrel Protein Host: Molecular-Docking and Reactivity Insights. Eur J Inorg Chem 2017. [DOI: 10.1002/ejic.201700365] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Lucrèce Pocquet
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
| | - Nikolay Vologdin
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
| | - Giuseppe Felice Mangiatordi
- Dipartimento di Farmacia - Scienze del Farmaco; Università di Bari “Aldo Moro”; Via Orabona 4 70126 Bari Italy
| | - Ilaria Ciofini
- PSL Research university; Chimie ParisTech; CNRS Institut de Recherche de Chimie Paris (IRCP); 11 rue Pierre et Marie Curie 75005 Paris France
| | - Orazio Nicolotti
- Dipartimento di Farmacia - Scienze del Farmaco; Università di Bari “Aldo Moro”; Via Orabona 4 70126 Bari Italy
- Centro Ricerche TIRES; Università di Bari “Aldo Moro”; Via Amendola 173 70126 Bari Italy
| | - Serge Thorimbert
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
| | - Michèle Salmain
- Sorbonne Universités; UPMC Univ Paris 06; CNRS; Institut Parisien de Chimie Moléculaire (IPCM); 4 Place Jussieu 75005 Paris France
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6
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Duchemin N, Heath-Apostolopoulos I, Smietana M, Arseniyadis S. A decade of DNA-hybrid catalysis: from innovation to comprehension. Org Biomol Chem 2017; 15:7072-7087. [DOI: 10.1039/c7ob00176b] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Since the pioneering work of Roelfes and Feringa in the field of DNA-based asymmetric catalysis, the unique chirality of oligonucleotides has allowed the development of a variety of asymmetric synthetic transformations. This review offers a complete overview of the field.
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Affiliation(s)
- Nicolas Duchemin
- Queen Mary University of London
- School of Biological and Chemical Sciences
- London
- UK
| | | | - Michael Smietana
- Institut des Biomolécules Max Mousseron
- UMR 5247 CNRS
- Université de Montpellier
- 34095 Montpellier
- France
| | - Stellios Arseniyadis
- Queen Mary University of London
- School of Biological and Chemical Sciences
- London
- UK
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7
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Hyster TK, Ward TR. Genetische Optimierung von Metalloenzymen: Weiterentwicklung von Enzymen für nichtnatürliche Reaktionen. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201508816] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Todd K. Hyster
- Department of Chemistry; Princeton University; Princeton NJ 08544 USA
| | - Thomas R. Ward
- Departement Chemie; Universität Basel; Spitalstrasse 51 CH-4056 Basel Schweiz
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8
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Hyster TK, Ward TR. Genetic Optimization of Metalloenzymes: Enhancing Enzymes for Non-Natural Reactions. Angew Chem Int Ed Engl 2016; 55:7344-57. [PMID: 26971363 DOI: 10.1002/anie.201508816] [Citation(s) in RCA: 119] [Impact Index Per Article: 14.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2015] [Indexed: 12/30/2022]
Abstract
Artificial metalloenzymes have received increasing attention over the last decade as a possible solution to unaddressed challenges in synthetic organic chemistry. Whereas traditional transition-metal catalysts typically only take advantage of the first coordination sphere to control reactivity and selectivity, artificial metalloenzymes can modulate both the first and second coordination spheres. This difference can manifest itself in reactivity profiles that can be truly unique to artificial metalloenzymes. This Review summarizes attempts to modulate the second coordination sphere of artificial metalloenzymes by using genetic modifications of the protein sequence. In doing so, successful attempts and creative solutions to address the challenges encountered are highlighted.
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Affiliation(s)
- Todd K Hyster
- Department of Chemistry, Princeton University, Princeton, NJ, 08544, USA.
| | - Thomas R Ward
- Department of Chemistry, University of Basel, Spitalstrasse 51, CH-4056, Basel, Switzerland.
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9
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Chatterjee A, Mallin H, Klehr J, Vallapurackal J, Finke AD, Vera L, Marsh M, Ward TR. An enantioselective artificial Suzukiase based on the biotin-streptavidin technology. Chem Sci 2015; 7:673-677. [PMID: 29896353 PMCID: PMC5953008 DOI: 10.1039/c5sc03116h] [Citation(s) in RCA: 76] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Accepted: 10/17/2015] [Indexed: 01/01/2023] Open
Abstract
Introduction of a biotinylated monophosphine palladium complex within streptavidin affords an enantioselective artificial Suzukiase. Site-directed mutagenesis allowed the optimization of the activity and the enantioselectivity of this artificial metalloenzyme. A variety of atropisomeric biaryls were produced in good yields and up to 90% ee.
Introduction of a biotinylated monophosphine palladium complex within streptavidin affords an enantioselective artificial Suzukiase. Site-directed mutagenesis allowed the optimization of the activity and the enantioselectivity of this artificial metalloenzyme. A variety of atropisomeric biaryls were produced in good yields and up to 90% ee. The hybrid catalyst described herein shows comparable TOF to the previous aqueous-asymmetric Suzuki catalysts, and excellent stability under the reaction conditions to realize higher TON through longer reaction time.
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Affiliation(s)
- Anamitra Chatterjee
- Department of Chemistry , University of Basel , Spitalstrasse 51 , 4056 Basel , Switzerland .
| | - Hendrik Mallin
- Department of Chemistry , University of Basel , Spitalstrasse 51 , 4056 Basel , Switzerland .
| | - Juliane Klehr
- Department of Chemistry , University of Basel , Spitalstrasse 51 , 4056 Basel , Switzerland .
| | - Jaicy Vallapurackal
- Department of Chemistry , University of Basel , Spitalstrasse 51 , 4056 Basel , Switzerland .
| | - Aaron D Finke
- Swiss Light Source , Paul Scherrer Institute 5232 Villigen PSI , Switzerland
| | - Laura Vera
- Swiss Light Source , Paul Scherrer Institute 5232 Villigen PSI , Switzerland
| | - May Marsh
- Swiss Light Source , Paul Scherrer Institute 5232 Villigen PSI , Switzerland
| | - Thomas R Ward
- Department of Chemistry , University of Basel , Spitalstrasse 51 , 4056 Basel , Switzerland .
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10
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Basauri-Molina M, Verhoeven DGA, van Schaik AJ, Kleijn H, Klein Gebbink RJM. Ring-Closing and Cross-Metathesis with Artificial Metalloenzymes Created by Covalent Active Site-Directed Hybridization of a Lipase. Chemistry 2015; 21:15676-85. [PMID: 26346291 DOI: 10.1002/chem.201502381] [Citation(s) in RCA: 39] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2015] [Indexed: 11/08/2022]
Abstract
A series of Grubbs-type catalysts that contain lipase-inhibiting phosphoester functionalities have been synthesized and reacted with the lipase cutinase, which leads to artificial metalloenzymes for olefin metathesis. The resulting hybrids comprise the organometallic fragment that is covalently bound to the active amino acid residue of the enzyme host in an orthogonal orientation. Differences in reactivity as well as accessibility of the active site by the functionalized inhibitor became evident through variation of the anchoring motif and substituents on the N-heterocyclic carbene ligand. Such observations led to the design of a hybrid that is active in the ring-closing metathesis and the cross-metathesis of N,N-diallyl-p-toluenesulfonamide and allylbenzene, respectively, the latter being the first example of its kind in the field of artificial metalloenzymes.
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Affiliation(s)
- Manuel Basauri-Molina
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Dide G A Verhoeven
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Arnoldus J van Schaik
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Henk Kleijn
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands)
| | - Robertus J M Klein Gebbink
- Organic Chemistry and Catalysis, Institute for Nanomaterials Science, Faculty of Science, Utrecht University, Universiteitsweg 99, Utrecht 3584CG (The Netherlands).
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11
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Pàmies O, Diéguez M, Bäckvall JE. Artificial Metalloenzymes in Asymmetric Catalysis: Key Developments and Future Directions. Adv Synth Catal 2015. [DOI: 10.1002/adsc.201500290] [Citation(s) in RCA: 61] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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12
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Yu F, Cangelosi VM, Zastrow ML, Tegoni M, Plegaria JS, Tebo AG, Mocny CS, Ruckthong L, Qayyum H, Pecoraro VL. Protein design: toward functional metalloenzymes. Chem Rev 2014; 114:3495-578. [PMID: 24661096 PMCID: PMC4300145 DOI: 10.1021/cr400458x] [Citation(s) in RCA: 340] [Impact Index Per Article: 34.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Fangting Yu
- University of Michigan, Ann Arbor, Michigan 48109, United States
| | | | | | | | | | - Alison G. Tebo
- University of Michigan, Ann Arbor, Michigan 48109, United States
| | | | - Leela Ruckthong
- University of Michigan, Ann Arbor, Michigan 48109, United States
| | - Hira Qayyum
- University of Michigan, Ann Arbor, Michigan 48109, United States
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13
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14
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Gauchot V, Branca M, Schmitzer A. Encapsulation of a catalytic imidazolium salt into avidin: towards the development of a biohybrid catalyst active in ionic liquids. Chemistry 2014; 20:1530-8. [PMID: 24382747 DOI: 10.1002/chem.201303865] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2013] [Indexed: 11/09/2022]
Abstract
Herein, we report the development of biohybrid catalysts that are capable of catalyzing the aldol reaction. The use of biotinylated imidazolium salts in combination with racemic or enantiomerically pure catalytic anions allowed us to study the adaptive and cooperative positioning of the anionic catalyst inside the protein. Supramolecular encapsulation of the biotinylated catalyst into avidin resulted in good selectivity for the aldol reaction performed in ionic liquid/water mixtures.
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Affiliation(s)
- Vincent Gauchot
- Departement de Chimie, Université de Montréal, C. P. 6128 Succursale Centre-Ville, Montréal, Québec H3C 3 J7 (Canada)
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15
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Li W, Deng L, Moosa B, Wang G, Mashat A, M. Khashab N. “Nail” and “comb” effects of cholesterol modified NIPAm oligomers on cancer targeting liposomes. Biomater Sci 2014; 2:476-483. [DOI: 10.1039/c3bm60222b] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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16
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Yang H, Srivastava P, Zhang C, Lewis JC. A general method for artificial metalloenzyme formation through strain-promoted azide-alkyne cycloaddition. Chembiochem 2013; 15:223-7. [PMID: 24376040 DOI: 10.1002/cbic.201300661] [Citation(s) in RCA: 83] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2013] [Indexed: 12/29/2022]
Abstract
Strain-promoted azide-alkyne cycloaddition (SPAAC) can be used to generate artificial metalloenzymes (ArMs) from scaffold proteins containing a p-azido-L-phenylalanine (Az) residue and catalytically active bicyclononyne-substituted metal complexes. The high efficiency of this reaction allows rapid ArM formation when using Az residues within the scaffold protein in the presence of cysteine residues or various reactive components of cellular lysate. In general, cofactor-based ArM formation allows the use of any desired metal complex to build unique inorganic protein materials. SPAAC covalent linkage further decouples the native function of the scaffold from the installation process because it is not affected by native amino acid residues; as long as an Az residue can be incorporated, an ArM can be generated. We have demonstrated the scope of this method with respect to both the scaffold and cofactor components and established that the dirhodium ArMs generated can catalyze the decomposition of diazo compounds and both Si-H and olefin insertion reactions involving these carbene precursors.
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Affiliation(s)
- Hao Yang
- Department of Chemistry, University of Chicago, 5735 S. Ellis Ave., Chicago, IL 60637 (USA)
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17
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Philippart F, Arlt M, Gotzen S, Tenne SJ, Bocola M, Chen HH, Zhu L, Schwaneberg U, Okuda J. A hybrid ring-opening metathesis polymerization catalyst based on an engineered variant of the β-barrel protein FhuA. Chemistry 2013; 19:13865-71. [PMID: 23959581 DOI: 10.1002/chem.201301515] [Citation(s) in RCA: 66] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2013] [Revised: 06/20/2013] [Indexed: 11/06/2022]
Abstract
A β-barrel protein hybrid catalyst was prepared by covalently anchoring a Grubbs-Hoveyda type olefin metathesis catalyst at a single accessible cysteine amino acid in the barrel interior of a variant of β-barrel transmembrane protein ferric hydroxamate uptake protein component A (FhuA). Activity of this hybrid catalyst type was demonstrated by ring-opening metathesis polymerization of a 7-oxanorbornene derivative in aqueous solution.
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Affiliation(s)
- Freddi Philippart
- Institut für Anorganische Chemie, RWTH Aachen University, Landoltweg 1, 52056 Aachen (Germany)
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18
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Reiner T, Jantke D, Marziale AN, Raba A, Eppinger J. Metal-conjugated affinity labels: a new concept to create enantioselective artificial metalloenzymes. ChemistryOpen 2013; 2:50-4. [PMID: 24551533 PMCID: PMC3646430 DOI: 10.1002/open.201200044] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2012] [Indexed: 01/18/2023] Open
Affiliation(s)
- Thomas Reiner
- Chemistry Department, Technische Universität München Lichtenbergstr. 4, 85748 Garching (Germany)
| | - Dominik Jantke
- KAUST Catalysis Center, KCC, King Abdullah University of Science and Technology KAUST, Thuwal 23955-6900 (Saudi Arabia)
| | - Alexander N Marziale
- KAUST Catalysis Center, KCC, King Abdullah University of Science and Technology KAUST, Thuwal 23955-6900 (Saudi Arabia)
| | - Andreas Raba
- Chemistry Department, Technische Universität München Lichtenbergstr. 4, 85748 Garching (Germany)
| | - Jörg Eppinger
- KAUST Catalysis Center, KCC, King Abdullah University of Science and Technology KAUST, Thuwal 23955-6900 (Saudi Arabia)
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19
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Sambasivan R, Ball ZT. Screening Rhodium Metallopeptide Libraries “On Bead”: Asymmetric Cyclopropanation and a Solution to the Enantiomer Problem. Angew Chem Int Ed Engl 2012. [DOI: 10.1002/ange.201202512] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ramya Sambasivan
- Department of Chemistry MS 60, Rice University, 6100 Main street, Houston, TX 77005 (USA) http://www.ztb.rice.edu
| | - Zachary T. Ball
- Department of Chemistry MS 60, Rice University, 6100 Main street, Houston, TX 77005 (USA) http://www.ztb.rice.edu
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20
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Sambasivan R, Ball ZT. Screening Rhodium Metallopeptide Libraries “On Bead”: Asymmetric Cyclopropanation and a Solution to the Enantiomer Problem. Angew Chem Int Ed Engl 2012; 51:8568-72. [DOI: 10.1002/anie.201202512] [Citation(s) in RCA: 61] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2012] [Revised: 05/08/2012] [Indexed: 11/10/2022]
Affiliation(s)
- Ramya Sambasivan
- Department of Chemistry MS 60, Rice University, 6100 Main street, Houston, TX 77005 (USA) http://www.ztb.rice.edu
| | - Zachary T. Ball
- Department of Chemistry MS 60, Rice University, 6100 Main street, Houston, TX 77005 (USA) http://www.ztb.rice.edu
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21
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Rosati F, Roelfes G. A Ligand Structure-Activity Study of DNA-Based Catalytic Asymmetric Hydration and Diels-Alder Reactions. ChemCatChem 2011. [DOI: 10.1002/cctc.201000440] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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22
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Deuss PJ, den Heeten R, Laan W, Kamer PCJ. Bioinspired Catalyst Design and Artificial Metalloenzymes. Chemistry 2011; 17:4680-98. [DOI: 10.1002/chem.201003646] [Citation(s) in RCA: 166] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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23
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Bauke Albada H, Rosati F, Coquière D, Roelfes G, Liskamp RMJ. Enantioselective CuII-Catalyzed Diels-Alder and Michael Addition Reactions in Water Using Bio-Inspired Triazacyclophane-Based Ligands. European J Org Chem 2011. [DOI: 10.1002/ejoc.201001522] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Silverman SK. DNA as a versatile chemical component for catalysis, encoding, and stereocontrol. Angew Chem Int Ed Engl 2011; 49:7180-201. [PMID: 20669202 DOI: 10.1002/anie.200906345] [Citation(s) in RCA: 201] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Abstract
DNA (deoxyribonucleic acid) is the genetic material common to all of Earth's organisms. Our biological understanding of DNA is extensive and well-exploited. In recent years, chemists have begun to develop DNA for nonbiological applications in catalysis, encoding, and stereochemical control. This Review summarizes key advances in these three exciting research areas, each of which takes advantage of a different subset of DNA's useful chemical properties.
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Affiliation(s)
- Scott K Silverman
- Department of Chemistry, University of Illinois at Urbana-Champaign, 600 South Mathews Avenue, Urbana, IL 61801, USA.
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25
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Silverman SK. DNA - eine vielseitige chemische Verbindung für die Katalyse, zur Kodierung und zur Stereokontrolle. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.200906345] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
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26
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Deuss P, Popa G, Botting C, Laan W, Kamer P. Highly Efficient and Site-Selective Phosphane Modification of Proteins through Hydrazone Linkage: Development of Artificial Metalloenzymes. Angew Chem Int Ed Engl 2010. [DOI: 10.1002/ange.201002174] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Deuss P, Popa G, Botting C, Laan W, Kamer P. Highly Efficient and Site-Selective Phosphane Modification of Proteins through Hydrazone Linkage: Development of Artificial Metalloenzymes. Angew Chem Int Ed Engl 2010; 49:5315-7. [DOI: 10.1002/anie.201002174] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Laan W, Muñoz BK, den Heeten R, Kamer PCJ. Artificial Metalloenzymes through Cysteine-Selective Conjugation of Phosphines to Photoactive Yellow Protein. Chembiochem 2010; 11:1236-9. [DOI: 10.1002/cbic.201000159] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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Rosati F, Boersma AJ, Klijn JE, Meetsma A, Feringa BL, Roelfes G. A kinetic and structural investigation of DNA-based asymmetric catalysis using first-generation ligands. Chemistry 2010; 15:9596-605. [PMID: 19579236 DOI: 10.1002/chem.200900456] [Citation(s) in RCA: 57] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The recently developed concept of DNA-based asymmetric catalysis involves the transfer of chirality from the DNA double helix in reactions using a noncovalently bound catalyst. To date, two generations of DNA-based catalysts have been reported that differ in the design of the ligand for the metal. Herein we present a study of the first generation of DNA-based catalysts, which contain ligands comprising a metal-binding domain linked through a spacer to a 9-aminoacridine moiety. Particular emphasis has been placed on determining the effect of DNA on the structure of the Cu(II) complex and the catalyzed Diels-Alder reaction. The most important findings are that the role of DNA is limited to being a chiral scaffold; no rate acceleration was observed in the presence of DNA. Furthermore, the optimal DNA sequence for obtaining high enantioselectivities proved to contain alternating GC nucleotides. Finally, DNA has been shown to interact with the Cu(II) complex to give a chiral structure. Comparison with the second generation of DNA-based catalysts, which bear bipyridine-type ligands, revealed marked differences, which are believed to be related to the DNA microenvironment in which the catalyst resides and where the reaction takes place.
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Affiliation(s)
- Fiora Rosati
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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Fournier P, Fiammengo R, Jäschke A. Allylic amination by a DNA-diene-iridium(I) hybrid catalyst. Angew Chem Int Ed Engl 2009; 48:4426-9. [PMID: 19431178 DOI: 10.1002/anie.200900713] [Citation(s) in RCA: 112] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
DNA hybrid catalysis goes organometallic: A DNA strand functionalized with diene ligands forms iridium(I) complexes that can efficiently catalyze an allylic amination in aqueous medium (see scheme). The DNA-based complexes show high stability and activity, and their secondary structure influences the stereoselectivity of the reaction.
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Affiliation(s)
- Pierre Fournier
- Institut für Pharmazie und Molekulare Biotechnologie, Universität Heidelberg, 69120 Heidelberg, Germany
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Coquière D, Bos J, Beld J, Roelfes G. Enantioselective artificial metalloenzymes based on a bovine pancreatic polypeptide scaffold. Angew Chem Int Ed Engl 2009; 48:5159-62. [PMID: 19557756 DOI: 10.1002/anie.200901134] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Site creation: Enantioselective artificial metalloenzymes have been created by grafting a new active site onto bovine pancreatic polypeptide through the introduction of an amino acid capable of coordinating a copper(II) ion. This hybrid catalyst gave good enantioselectivities in the Diels-Alder and Michael addition reactions in water (see scheme) and displayed a very high substrate selectivity.
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Affiliation(s)
- David Coquière
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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Coquière D, Bos J, Beld J, Roelfes G. Enantioselective Artificial Metalloenzymes Based on a Bovine Pancreatic Polypeptide Scaffold. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200901134] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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Fournier P, Fiammengo R, Jäschke A. Allylische Aminierung durch einen DNA-Dien-Iridium(I)- Hybridkatalysator. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200900713] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Rutten L, Wieczorek B, Mannie JP, Kruithof C, Dijkstra H, Egmond M, Lutz M, Klein Gebbink R, Gros P, van Koten G. Solid-State Structural Characterization of Cutinase-ECE-Pincer-Metal Hybrids. Chemistry 2009; 15:4270-80. [DOI: 10.1002/chem.200801995] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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