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Hübner O, Thusek J, Himmel HJ. Pyridine Dimers and Their Low-Temperature Isomerization: A High-Resolution Matrix-Isolation Spectroscopy Study. Angew Chem Int Ed Engl 2023; 62:e202218042. [PMID: 36633004 DOI: 10.1002/anie.202218042] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2022] [Revised: 01/11/2023] [Accepted: 01/11/2023] [Indexed: 01/13/2023]
Abstract
The bonding between two neutral aromatic compounds, especially small ones, has been controversially debated in the last decades, and terms like "π-stacking" had to be revised. Surprisingly, despite of many experimental and computational work, there is still no clear consensus about the structure of and the bonding in the pyridine dimer. In this work, for different isomeric forms of the pyridine dimer, the structures and bonding were elucidated by combining high-resolution matrix-isolation spectroscopic results with quantum-chemical calculations. High-resolution IR spectra of Ne matrices at 4 K containing pyridine were recorded for different concentrations and upon annealing to 10 and 12 K, relying on three isotopologues of pyridine. The spectra show the presence of hydrogen-bonded, T-shaped, and stacked forms of weakly-bound pyridine dimers. Among these, the hydrogen-bonded isomer is identified as the lowest-energy form. The results provide for the first time conclusive information about the interaction between two pyridine dimers.
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Affiliation(s)
- Olaf Hübner
- Inorganic Chemistry, Ruprecht-Karls University of Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Jean Thusek
- Inorganic Chemistry, Ruprecht-Karls University of Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
| | - Hans-Jörg Himmel
- Inorganic Chemistry, Ruprecht-Karls University of Heidelberg, Im Neuenheimer Feld 270, 69120, Heidelberg, Germany
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2
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Liu Y, Ho LTA, Huang GZ, Chen YC, Ungur L, Liu JL, Tong ML. Magnetization Dynamics on Isotope-Isomorphic Holmium Single-Molecule Magnets. Angew Chem Int Ed Engl 2021; 60:27282-27287. [PMID: 34668633 DOI: 10.1002/anie.202112764] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2021] [Revised: 10/16/2021] [Indexed: 11/08/2022]
Abstract
Here we reported the deuteration of the metal-binding equatorial water molecules in a reported HoIII single-molecule magnet (SMM) with pentagonal-bipyramidal geometry, from [Ho(CyPh2 PO)2 (H2 O)5 ]3+ to [Ho(CyPh2 PO)2 (D2 O)5 ]3+ . The hyperfine structures originating from the nuclear spin of 165 HoIII can be clearly observed. Moreover, the resulting magnetization dynamics revealed the switch of the relative relaxation rates for the two isotope-isomorphic complexes-respectively faster/slower at low/high temperature. The noticeable isotope effect arises from not only the paramagnetic metal center but also the diamagnetic ligands, which can be explained by the ab initio calculated tunnel splitting and the involvement of the super-hyperfine interaction related to the difference in the nuclear spin number of protium (1 H, I=1 /2 ) and deuterium (2 H, I=1).
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Affiliation(s)
- Yang Liu
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education, School of Chemistry, Sun Yat-Sen University, Guangzhou, 510006, P. R. China
| | - Le Tuan Anh Ho
- Department of Chemistry, National University of Singapore, Singapore, 117543, Singapore
| | - Guo-Zhang Huang
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education, School of Chemistry, Sun Yat-Sen University, Guangzhou, 510006, P. R. China
| | - Yan-Cong Chen
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education, School of Chemistry, Sun Yat-Sen University, Guangzhou, 510006, P. R. China
| | - Liviu Ungur
- Department of Chemistry, National University of Singapore, Singapore, 117543, Singapore
| | - Jun-Liang Liu
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education, School of Chemistry, Sun Yat-Sen University, Guangzhou, 510006, P. R. China
| | - Ming-Liang Tong
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education, School of Chemistry, Sun Yat-Sen University, Guangzhou, 510006, P. R. China
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Liu Y, Ho LTA, Huang G, Chen Y, Ungur L, Liu J, Tong M. Magnetization Dynamics on Isotope‐Isomorphic Holmium Single‐Molecule Magnets. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202112764] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Yang Liu
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education School of Chemistry Sun Yat-Sen University Guangzhou 510006 P. R. China
| | - Le Tuan Anh Ho
- Department of Chemistry National University of Singapore Singapore 117543 Singapore
| | - Guo‐Zhang Huang
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education School of Chemistry Sun Yat-Sen University Guangzhou 510006 P. R. China
| | - Yan‐Cong Chen
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education School of Chemistry Sun Yat-Sen University Guangzhou 510006 P. R. China
| | - Liviu Ungur
- Department of Chemistry National University of Singapore Singapore 117543 Singapore
| | - Jun‐Liang Liu
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education School of Chemistry Sun Yat-Sen University Guangzhou 510006 P. R. China
| | - Ming‐Liang Tong
- Key Lab of Bioinorganic and Synthetic Chemistry of Ministry of Education School of Chemistry Sun Yat-Sen University Guangzhou 510006 P. R. China
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Atzrodt J, Derdau V, Kerr WJ, Reid M. Deuterium- und tritiummarkierte Verbindungen: Anwendungen in den modernen Biowissenschaften. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201704146] [Citation(s) in RCA: 90] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jens Atzrodt
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry; Industriepark Höchst, G876 65926 Frankfurt Deutschland
| | - Volker Derdau
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry; Industriepark Höchst, G876 65926 Frankfurt Deutschland
| | - William J. Kerr
- Department of Pure and Applied Chemistry, WestCHEM; University of Strathclyde; 295 Cathedral Street Glasgow Scotland G1 1XL Großbritannien
| | - Marc Reid
- Department of Pure and Applied Chemistry, WestCHEM; University of Strathclyde; 295 Cathedral Street Glasgow Scotland G1 1XL Großbritannien
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Atzrodt J, Derdau V, Kerr WJ, Reid M. Deuterium- and Tritium-Labelled Compounds: Applications in the Life Sciences. Angew Chem Int Ed Engl 2018; 57:1758-1784. [PMID: 28815899 DOI: 10.1002/anie.201704146] [Citation(s) in RCA: 421] [Impact Index Per Article: 70.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2017] [Revised: 07/27/2017] [Indexed: 12/19/2022]
Abstract
Hydrogen isotopes are unique tools for identifying and understanding biological and chemical processes. Hydrogen isotope labelling allows for the traceless and direct incorporation of an additional mass or radioactive tag into an organic molecule with almost no changes in its chemical structure, physical properties, or biological activity. Using deuterium-labelled isotopologues to study the unique mass-spectrometric patterns generated from mixtures of biologically relevant molecules drastically simplifies analysis. Such methods are now providing unprecedented levels of insight in a wide and continuously growing range of applications in the life sciences and beyond. Tritium (3 H), in particular, has seen an increase in utilization, especially in pharmaceutical drug discovery. The efforts and costs associated with the synthesis of labelled compounds are more than compensated for by the enhanced molecular sensitivity during analysis and the high reliability of the data obtained. In this Review, advances in the application of hydrogen isotopes in the life sciences are described.
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Affiliation(s)
- Jens Atzrodt
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry, Industriepark Höchst, G876, 65926, Frankfurt, Germany
| | - Volker Derdau
- Isotope Chemistry and Metabolite Synthesis, Integrated Drug Discovery, Medicinal Chemistry, Industriepark Höchst, G876, 65926, Frankfurt, Germany
| | - William J Kerr
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, Scotland, G1 1XL, UK
| | - Marc Reid
- Department of Pure and Applied Chemistry, WestCHEM, University of Strathclyde, 295 Cathedral Street, Glasgow, Scotland, G1 1XL, UK
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Shishkin OV, Shishkina SV, Maleev AV, Zubatyuk RI, Vasylyeva V, Merz K. Influence of Deuteration and Fluorination on the Supramolecular Architecture of Pyridine N‐Oxide Crystals. Chemphyschem 2012; 14:847-56. [DOI: 10.1002/cphc.201200581] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/17/2012] [Revised: 08/11/2012] [Indexed: 11/08/2022]
Affiliation(s)
- Oleg V. Shishkin
- Division of Functional Materials Chemistry, SSI “Institute for Single Crystals”, National Academy of Science of Ukraine, 60 Lenina ave., Kharkiv, 61001 (Ukraine)
- Department of Inorganic Chemistry, V. N. Karazin Kharkiv National University, 4 Svobody sq., Kharkiv 61122 (Ukraine)
| | - Svitlana V. Shishkina
- Division of Functional Materials Chemistry, SSI “Institute for Single Crystals”, National Academy of Science of Ukraine, 60 Lenina ave., Kharkiv, 61001 (Ukraine)
| | - Andrey V. Maleev
- Vladimir State University, 87 Gorky str., Vladimir, 600000 (Russian Federation)
| | - Roman I. Zubatyuk
- Division of Functional Materials Chemistry, SSI “Institute for Single Crystals”, National Academy of Science of Ukraine, 60 Lenina ave., Kharkiv, 61001 (Ukraine)
| | - Vera Vasylyeva
- Inorganic Chemistry I, Ruhr‐University Bochum, Universitaetstrasse 150, 44801 Bochum (Germany)
| | - Klaus Merz
- Inorganic Chemistry I, Ruhr‐University Bochum, Universitaetstrasse 150, 44801 Bochum (Germany)
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