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Shepard SM, Jessen HJ, Cummins CC. Beyond Triphosphates: Reagents and Methods for Chemical Oligophosphorylation. J Am Chem Soc 2022; 144:7517-7530. [PMID: 35471019 DOI: 10.1021/jacs.1c07990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Oligophosphates play essential roles in biochemistry, and considerable research has been directed toward the synthesis of both naturally occurring oligophosphates and their synthetic analogues. Greater attention has been given to mono-, di-, and triphosphates, as these are present in higher concentrations biologically and easier to synthesize. However, extended oligophosphates have potent biochemical roles, ranging from blood coagulation to HIV drug resistance. Sporadic reports have slowly built a niche body of literature related to the synthesis and study of extended oligophosphates, but newfound interests and developments have the potential to rapidly expand this field. Here we report on current methods to synthesize oligophosphates longer than triphosphates and comment on the most important future directions for this area of research. The state of the art has provided fairly robust methods for synthesizing nucleoside 5'-tetra- and pentaphosphates as well as dinucleoside 5',5'-oligophosphates. Future research should endeavor to push such syntheses to longer oligophosphates while developing synthetic methodologies for rarer morphologies such as 3'-nucleoside oligophosphates, polyphosphates, and phosphonate/thiophosphate analogues of these species.
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Affiliation(s)
- Scott M Shepard
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge Massachusetts 02139, United States
| | - Henning J Jessen
- Institute of Organic Chemistry, University of Freiburg & Cluster of Excellence livMatS, FIT - Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, D-79110 Freiburg, Germany
| | - Christopher C Cummins
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge Massachusetts 02139, United States
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2
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Appy L, Depaix A, Bantreil X, Lamaty F, Peyrottes S, Roy B. Straightforward Ball-Milling Access to Dinucleoside 5',5'-Polyphosphates via Phosphorimidazolide Intermediates. Chemistry 2019; 25:2477-2481. [PMID: 30549335 DOI: 10.1002/chem.201805924] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2018] [Indexed: 11/08/2022]
Abstract
A solvent-assisted mechanochemical approach to access symmetrical and mixed dinucleoside 5,5'-polyphosphates is reported. Under ball-milling conditions, nucleoside 5'-monophosphates were quantitatively activated using 1,1'-carbonyldiimidazole, forming their phosphorimidazolide derivatives. The addition of a nucleoside 5'-mono-, di- or triphosphate directly led to the formation of the corresponding dinucleotides. Benefits of the reported one-pot method include the use of unprotected nucleotides in their sodium or acid form, activation by the eco-friendly 1,1'-carbonyldiimidazole, non-dry conditions, short reaction time, high conversion rates, and easy setup and purification. This work offers new perspectives for the synthesis of nucleotide conjugates and analogues, combining the phosphorimidazolide approach and milling conditions.
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Affiliation(s)
- Lucie Appy
- Nucleosides & Phosphorylated Effectors, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, Campus Triolet, cc1705, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Anaïs Depaix
- Nucleosides & Phosphorylated Effectors, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, Campus Triolet, cc1705, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Xavier Bantreil
- Green Chemistry and Enabling Technologies, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, Campus Triolet, cc1703, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Frédéric Lamaty
- Green Chemistry and Enabling Technologies, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, Campus Triolet, cc1703, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Suzanne Peyrottes
- Nucleosides & Phosphorylated Effectors, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, Campus Triolet, cc1705, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
| | - Béatrice Roy
- Nucleosides & Phosphorylated Effectors, Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS, ENSCM, Université de Montpellier, Campus Triolet, cc1705, Place Eugène Bataillon, 34095, Montpellier cedex 5, France
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3
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Su Y, Zhao Z, Li S, Liu F, Zhang Z. Rational design of a novel quaternary ZnO@ZnS/Ag@Ag2S nanojunction system for enhanced photocatalytic H2 production. Inorg Chem Front 2018. [DOI: 10.1039/c8qi00828k] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A novel ZnO@ZnS/Ag@Ag2S quaternary nanojunction photocatalyst has been designed for efficient solar water splitting.
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Affiliation(s)
- Yiping Su
- School of Environmental Science and Engineering
- Guangdong Provincial Key Laboratory of Soil and Groundwater Pollution Control
- Southern University of Science and Technology
- Shenzhen 518055
- China
| | - Zhicheng Zhao
- School of Environmental Science and Engineering
- Guangdong Provincial Key Laboratory of Soil and Groundwater Pollution Control
- Southern University of Science and Technology
- Shenzhen 518055
- China
| | - Shun Li
- School of Environmental Science and Engineering
- Guangdong Provincial Key Laboratory of Soil and Groundwater Pollution Control
- Southern University of Science and Technology
- Shenzhen 518055
- China
| | - Fei Liu
- School of Environmental Science and Engineering
- Guangdong Provincial Key Laboratory of Soil and Groundwater Pollution Control
- Southern University of Science and Technology
- Shenzhen 518055
- China
| | - Zuotai Zhang
- School of Environmental Science and Engineering
- Guangdong Provincial Key Laboratory of Soil and Groundwater Pollution Control
- Southern University of Science and Technology
- Shenzhen 518055
- China
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4
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Depaix A, Peyrottes S, Roy B. One-Pot Synthesis of Nucleotides and Conjugates in Aqueous Medium. European J Org Chem 2016. [DOI: 10.1002/ejoc.201601299] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Anaïs Depaix
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS; ENSCM, Université de Montpellier; Campus Triolet, cc 1705, Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Suzanne Peyrottes
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS; ENSCM, Université de Montpellier; Campus Triolet, cc 1705, Place Eugène Bataillon 34095 Montpellier cedex 5 France
| | - Béatrice Roy
- Institut des Biomolécules Max Mousseron (IBMM), UMR 5247 CNRS; ENSCM, Université de Montpellier; Campus Triolet, cc 1705, Place Eugène Bataillon 34095 Montpellier cedex 5 France
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5
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Köhling S, Exner MP, Nojoumi S, Schiller J, Budisa N, Rademann J. One-Pot Synthesis of Unprotected Anomeric Glycosyl Thiols in Water for Glycan Ligation Reactions with Highly Functionalized Sugars. Angew Chem Int Ed Engl 2016; 55:15510-15514. [DOI: 10.1002/anie.201607228] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Revised: 09/26/2016] [Indexed: 11/07/2022]
Affiliation(s)
- Sebastian Köhling
- Medicinal Chemistry, Institut für Pharmazie; Freie Universität Berlin; Königin-Luise-Strasse 2+4 14195 Berlin Germany
- Institut für Biophysik; Universität Leipzig; Härtelstrasse 16-18 04107 Leipzig Germany
| | - Matthias P. Exner
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Strasse 10 10623 Berlin Germany
| | - Saba Nojoumi
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Strasse 10 10623 Berlin Germany
| | - Jürgen Schiller
- Institut für Biophysik; Universität Leipzig; Härtelstrasse 16-18 04107 Leipzig Germany
| | - Nediljko Budisa
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Strasse 10 10623 Berlin Germany
| | - Jörg Rademann
- Medicinal Chemistry, Institut für Pharmazie; Freie Universität Berlin; Königin-Luise-Strasse 2+4 14195 Berlin Germany
- Institut für Biophysik; Universität Leipzig; Härtelstrasse 16-18 04107 Leipzig Germany
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Köhling S, Exner MP, Nojoumi S, Schiller J, Budisa N, Rademann J. Eintopfsynthese ungeschützter anomerer Glykosylthiole in Wasser für Glykan-Ligationen mit hochfunktionalisierten Zuckern. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201607228] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Sebastian Köhling
- Medizinische Chemie, Institut für Pharmazie; Freie Universität Berlin; Königin-Luise-Straße 2+4 14195 Berlin Deutschland
- Institut für Biophysik; Universität Leipzig; Härtelstraße 16-18 04107 Leipzig Deutschland
| | - Matthias P. Exner
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Straße 10 10623 Berlin Deutschland
| | - Saba Nojoumi
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Straße 10 10623 Berlin Deutschland
| | - Jürgen Schiller
- Institut für Biophysik; Universität Leipzig; Härtelstraße 16-18 04107 Leipzig Deutschland
| | - Nediljko Budisa
- Institut für Chemie; Technische Universität Berlin; Müller-Breslau-Straße 10 10623 Berlin Deutschland
| | - Jörg Rademann
- Medizinische Chemie, Institut für Pharmazie; Freie Universität Berlin; Königin-Luise-Straße 2+4 14195 Berlin Deutschland
- Institut für Biophysik; Universität Leipzig; Härtelstraße 16-18 04107 Leipzig Deutschland
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Lemmerer M, Schmölzer K, Gutmann A, Nidetzky B. Downstream Processing of Nucleoside-Diphospho-Sugars from Sucrose Synthase Reaction Mixtures at Decreased Solvent Consumption. Adv Synth Catal 2016. [DOI: 10.1002/adsc.201600540] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Martin Lemmerer
- Austrian Centre of Industrial Biotechnology; Petersgasse 14 8010 Graz Austria
| | - Katharina Schmölzer
- Austrian Centre of Industrial Biotechnology; Petersgasse 14 8010 Graz Austria
| | - Alexander Gutmann
- Institute of Biotechnology and Biochemical Engineering, Graz University of Technology; NAWI Graz; Petersgasse 12/I 8010 Graz Austria
| | - Bernd Nidetzky
- Austrian Centre of Industrial Biotechnology; Petersgasse 14 8010 Graz Austria
- Institute of Biotechnology and Biochemical Engineering, Graz University of Technology; NAWI Graz; Petersgasse 12/I 8010 Graz Austria
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8
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Sherstyuk YV, Abramova TV. How To Form a Phosphate Anhydride Linkage in Nucleotide Derivatives. Chembiochem 2015; 16:2562-70. [PMID: 26420042 DOI: 10.1002/cbic.201500406] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2015] [Indexed: 12/25/2022]
Abstract
The fundamental roles of nucleoside triphosphates and nucleotide cofactors such as NAD(+) in biochemistry are well known. In recent decades, continuing research has revealed the key role of 5'-capped RNA and 5',5'-dinucleoside polyphosphates in the regulation of vitally important physiological processes. Last but not least, the commercial potential of nucleoside triphosphate synthesis can hardly be overestimated. Nevertheless, despite decades of investigation and the obvious topicality of the research on the chemical synthesis of the nucleotide compounds containing phosphate anhydride linkages, none of the existing procedures can be considered an up-to-date "gold standard". However, there are a number of fruitful synthetic approaches to forming phosphate anhydride linkages in satisfactory yield. These are summarized in this concise review, organized by the type of active phosphorous intermediate and reagents used.
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Affiliation(s)
- Yuliya V Sherstyuk
- Laboratory of Organic Synthesis, Institute of Chemical Biology and Fundamental Medicine, SB RAS, Lavrent'ev Avenue, 8, Novosibirsk, 630090, Russia
| | - Tatyana V Abramova
- Laboratory of Organic Synthesis, Institute of Chemical Biology and Fundamental Medicine, SB RAS, Lavrent'ev Avenue, 8, Novosibirsk, 630090, Russia.
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Hofer A, Cremosnik GS, Müller AC, Giambruno R, Trefzer C, Superti-Furga G, Bennett KL, Jessen HJ. A Modular Synthesis of Modified Phosphoanhydrides. Chemistry 2015; 21:10116-22. [PMID: 26033174 DOI: 10.1002/chem.201500838] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2015] [Indexed: 11/11/2022]
Abstract
Phosphoanhydrides (P-anhydrides) are ubiquitously occurring modifications in nature. Nucleotides and their conjugates, for example, are among the most important building blocks and signaling molecules in cell biology. To study and manipulate their biological functions, a diverse range of analogues have been developed. Phosphate-modified analogues have been successfully applied to study proteins that depend on these abundant cellular building blocks, but very often both the preparation and purification of these molecules are challenging. This study discloses a general access to P-anhydrides, including different nucleotide probes, that greatly facilitates their preparation and isolation. The convenient and scalable synthesis of, for example, (18) O labeled nucleoside triphosphates holds promise for future applications in phosphoproteomics.
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Affiliation(s)
- Alexandre Hofer
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich (Switzerland)
| | - Gregor S Cremosnik
- Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA (UK)
| | - André C Müller
- CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14, AKH BT 25.3, 1090 Vienna (Austria)
| | - Roberto Giambruno
- CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14, AKH BT 25.3, 1090 Vienna (Austria)
| | - Claudia Trefzer
- CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14, AKH BT 25.3, 1090 Vienna (Austria)
| | - Giulio Superti-Furga
- CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14, AKH BT 25.3, 1090 Vienna (Austria)
| | - Keiryn L Bennett
- CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Lazarettgasse 14, AKH BT 25.3, 1090 Vienna (Austria)
| | - Henning J Jessen
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057 Zürich (Switzerland).
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10
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Eixelsberger T, Nidetzky B. Enzymatic Redox Cascade for One-Pot Synthesis of Uridine 5'-Diphosphate Xylose from Uridine 5'-Diphosphate Glucose. Adv Synth Catal 2014; 356:3575-3584. [PMID: 26190959 PMCID: PMC4498474 DOI: 10.1002/adsc.201400766] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2014] [Indexed: 11/22/2022]
Abstract
Synthetic ways towards uridine 5′-diphosphate (UDP)-xylose are scarce and not well established, although this compound plays an important role in the glycobiology of various organisms and cell types. We show here how UDP-glucose 6-dehydrogenase (hUGDH) and UDP-xylose synthase 1 (hUXS) from Homo sapiens can be used for the efficient production of pure UDP-α-xylose from UDP-glucose. In a mimic of the natural biosynthetic route, UDP-glucose is converted to UDP-glucuronic acid by hUGDH, followed by subsequent formation of UDP-xylose by hUXS. The nicotinamide adenine dinucleotide (NAD+) required in the hUGDH reaction is continuously regenerated in a three-step chemo-enzymatic cascade. In the first step, reduced NAD+ (NADH) is recycled by xylose reductase from Candida tenuis via reduction of 9,10-phenanthrenequinone (PQ). Radical chemical re-oxidation of this mediator in the second step reduces molecular oxygen to hydrogen peroxide (H2O2) that is cleaved by bovine liver catalase in the last step. A comprehensive analysis of the coupled chemo-enzymatic reactions revealed pronounced inhibition of hUGDH by NADH and UDP-xylose as well as an adequate oxygen supply for PQ re-oxidation as major bottlenecks of effective performance of the overall multi-step reaction system. Net oxidation of UDP-glucose to UDP-xylose by hydrogen peroxide (H2O2) could thus be achieved when using an in situ oxygen supply through periodic external feed of H2O2 during the reaction. Engineering of the interrelated reaction parameters finally enabled production of 19.5 mM (10.5 g l−1) UDP-α-xylose. After two-step chromatographic purification the compound was obtained in high purity (>98%) and good overall yield (46%). The results provide a strong case for application of multi-step redox cascades in the synthesis of nucleotide sugar products.
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Affiliation(s)
- Thomas Eixelsberger
- Institute of Biotechnology and Biochemical Engineering, Graz University of Technology NAWI Graz, Petersgasse 12/I, A-8010 Graz, Austria
| | - Bernd Nidetzky
- Institute of Biotechnology and Biochemical Engineering, Graz University of Technology NAWI Graz, Petersgasse 12/I, A-8010 Graz, Austria ; Austrian Centre of Industrial Biotechnology Petersgasse 14, A-8010 Graz, Austria, ; phone: (+43)-316-873-8400 ; e-mail:
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11
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Lim D, Brimble MA, Kowalczyk R, Watson AJA, Fairbanks AJ. Protecting-Group-Free One-Pot Synthesis of Glycoconjugates Directly from Reducing Sugars. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201406694] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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12
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Lim D, Brimble MA, Kowalczyk R, Watson AJA, Fairbanks AJ. Protecting-group-free one-pot synthesis of glycoconjugates directly from reducing sugars. Angew Chem Int Ed Engl 2014; 53:11907-11. [PMID: 25199905 DOI: 10.1002/anie.201406694] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2014] [Indexed: 11/09/2022]
Abstract
The conversion of sugars into glycomimetics typically involves multiple protecting-group manipulations. The development of methodology allowing the direct aqueous conversion of free sugars into glycosides, and mimics of oligosaccharides and glycoconjugates in a high-yielding and stereoselective process is highly desirable. The combined use of 2-azido-1,3-dimethylimidazolinium hexafluorophosphate and the Cu-catalyzed Huisgen cycloaddition allowed the synthesis of a range of glycoconjugates in a one-step reaction directly from reducing sugars under aqueous conditions. The reaction, which is completely stereoselective, may be applied to the convergent synthesis of triazole-linked glycosides, oligosaccharides, and glycopeptides. The procedure provides a method for the one-pot aqueous ligation of oligosaccharides and peptides bearing alkyne side chains.
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Affiliation(s)
- David Lim
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch 8140 (New Zealand)
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Ghezal S, Thomasson MS, Lefebvre-Tournier I, Périgaud C, Macnaughtan MA, Roy B. CDP-Ethanolamine and CDP-Choline: one-pot synthesis and 31P NMR study. Tetrahedron Lett 2014. [DOI: 10.1016/j.tetlet.2014.07.076] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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14
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Serna S, Hokke CH, Weissenborn M, Flitsch S, Martin-Lomas M, Reichardt NC. Profiling Glycosyltransferase Activities by Tritium Imaging of Glycan Microarrays. Chembiochem 2013; 14:862-9. [DOI: 10.1002/cbic.201300051] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2013] [Indexed: 12/11/2022]
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