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Dockerill M, Winssinger N. DNA-Encoded Libraries: Towards Harnessing their Full Power with Darwinian Evolution. Angew Chem Int Ed Engl 2023; 62:e202215542. [PMID: 36458812 DOI: 10.1002/anie.202215542] [Citation(s) in RCA: 14] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Revised: 11/29/2022] [Accepted: 11/30/2022] [Indexed: 12/05/2022]
Abstract
DNA-encoded library (DEL) technologies are transforming the drug discovery process, enabling the identification of ligands at unprecedented speed and scale. DEL makes use of libraries that are orders of magnitude larger than traditional high-throughput screens. While a DNA tag alludes to a genotype-phenotype connection that is exploitable for molecular evolution, most of the work in the field is performed with libraries where the tag serves as an amplifiable barcode but does not allow "translation" into the synthetic product it is linked to. In this Review, we cover technologies that enable the "translation" of the genetic tag into synthetic molecules, both biochemically and chemically, and explore how it can be used to harness Darwinian evolutionary pressure.
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Affiliation(s)
- Millicent Dockerill
- Department of Organic Chemistry, NCCR Chemical Biology, Faculty of Sciences, University of Geneva, 1211, Geneva, Switzerland
| | - Nicolas Winssinger
- Department of Organic Chemistry, NCCR Chemical Biology, Faculty of Sciences, University of Geneva, 1211, Geneva, Switzerland
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Lonardi G, Parolin R, Licini G, Orlandi M. Catalytic Asymmetric Conjugate Reduction. Angew Chem Int Ed Engl 2023; 62:e202216649. [PMID: 36757599 DOI: 10.1002/anie.202216649] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Revised: 01/16/2023] [Accepted: 02/09/2023] [Indexed: 02/10/2023]
Abstract
Enantioselective reduction reactions are privileged transformations for the construction of trisubstituted stereogenic centers. While these include established synthetic strategies, such as asymmetric hydrogenation, methods based on the enantioselective addition of hydridic reagents to electrophilic prochiral substrates have also gained importance. In this context, the asymmetric conjugate reduction (ACR) of α,β-unsaturated compounds has become a convenient approach for the synthesis of chiral compounds with trisubstituted stereocenters in α-, β-, or γ-position to electron-withdrawing functional groups. Because such activating groups are diverse and amenable of further derivatizations, ACRs provide a general and powerful synthetic entry towards a variety of valuable chiral building blocks. This Review provides a comprehensive collection of catalytic ACR methods involving transition-metal, organic, and enzymatic catalysis since its first versions dating back to the late 1970s.
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Affiliation(s)
- Giovanni Lonardi
- Department of Chemical Sciences, University of Padova, Via Marzolo, 1, 35131, Padova, Italy
| | - Riccardo Parolin
- Department of Chemical Sciences, University of Padova, Via Marzolo, 1, 35131, Padova, Italy
| | - Giulia Licini
- Department of Chemical Sciences, University of Padova, Via Marzolo, 1, 35131, Padova, Italy
| | - Manuel Orlandi
- Department of Chemical Sciences, University of Padova, Via Marzolo, 1, 35131, Padova, Italy
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Saudan CM, Berrocosa A, Quintaine J, Spoehrle S, Maggi L, Mosimann H, Saudan L. Highly Selective Rhodium Catalyzed 1,4‐Hydrogenation of Conjugated Dienals. ChemCatChem 2022. [DOI: 10.1002/cctc.202200671] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
| | | | | | | | | | | | - Lionel Saudan
- FIRMENICH Research & Development 7 rue de la Bergère 1242 Satigny SWITZERLAND
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4
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Tamaribuchi K, Tian J, Akagawa K, Kudo K. Enantioselective Nitro‐Michael Addition Catalyzed by N‐Terminal Guanidinylated Helical Peptide. Adv Synth Catal 2021. [DOI: 10.1002/adsc.202101152] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Kenya Tamaribuchi
- Institute of Industrial Science The University of Tokyo 4-6-1 Komaba, Meguro-ku Tokyo 153-8505 Japan
| | - Jiaqi Tian
- Institute of Industrial Science The University of Tokyo 4-6-1 Komaba, Meguro-ku Tokyo 153-8505 Japan
| | - Kengo Akagawa
- Institute of Industrial Science The University of Tokyo 4-6-1 Komaba, Meguro-ku Tokyo 153-8505 Japan
| | - Kazuaki Kudo
- Institute of Industrial Science The University of Tokyo 4-6-1 Komaba, Meguro-ku Tokyo 153-8505 Japan
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Lu D, Lu P, Lu Z. Cobalt‐Catalyzed Asymmetric 1,4‐Reduction of
β,β‐
Dialkyl
α
,
β
‐Unsaturated Esters with PMHS. European J Org Chem 2021. [DOI: 10.1002/ejoc.202100856] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Dongpo Lu
- Department of Chemistry Zhejiang University Hangzhou 310058 China
| | - Peng Lu
- Department of Chemistry Zhejiang University Hangzhou 310058 China
| | - Zhan Lu
- Department of Chemistry Zhejiang University Hangzhou 310058 China
- College of Chemistry Zhengzhou University Zhengzhou 450001 China
- Key Laboratory of Organosilicon Chemistry and Material Technology of Ministry of Education Hangzhou Normal University Hangzhou 310058 China
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6
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Diastereoselective Synthesis of Functionalized Angularly-Fused Tetracyclesviaan Organocatalytic Quadruple Reaction Sequence. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201700023] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
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7
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Chauhan P, Kaya U, Enders D. Advances in Organocatalytic 1,6-Addition Reactions: Enantioselective Construction of Remote Stereogenic Centers. Adv Synth Catal 2017. [DOI: 10.1002/adsc.201601342] [Citation(s) in RCA: 162] [Impact Index Per Article: 23.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Pankaj Chauhan
- Institute of Organic Chemistry; RWTH Aachen University; Landoltweg 1 52074 Aachen Germany
| | - Uğur Kaya
- Institute of Organic Chemistry; RWTH Aachen University; Landoltweg 1 52074 Aachen Germany
| | - Dieter Enders
- Institute of Organic Chemistry; RWTH Aachen University; Landoltweg 1 52074 Aachen Germany
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Furukawa K, Oba M, Opiyo GO, Doi M, Tanaka M. Cyclic α,α-Disubstituted α-Amino Acids with Menthone in Their Side-Chains Linked through an Acetal Moiety and Helical Structures of Their Peptides. European J Org Chem 2016. [DOI: 10.1002/ejoc.201600241] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Kaori Furukawa
- Graduate School of Biomedical Sciences; Nagasaki University; 852-8521 Nagasaki Japan
| | - Makoto Oba
- Graduate School of Biomedical Sciences; Nagasaki University; 852-8521 Nagasaki Japan
| | - George Ouma Opiyo
- Graduate School of Biomedical Sciences; Nagasaki University; 852-8521 Nagasaki Japan
| | - Mitsunobu Doi
- Osaka University of Pharmaceutical Sciences; 569-1094 Osaka Japan
| | - Masakazu Tanaka
- Graduate School of Biomedical Sciences; Nagasaki University; 852-8521 Nagasaki Japan
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Wei Y, Liu Z, Wu X, Fei J, Gu X, Yuan X, Ye J. Remote Construction of Chiral Vicinal Tertiary and Quaternary Centers by Catalytic Asymmetric 1,6‐Conjugate Addition of Prochiral Carbon Nucleophiles to Cyclic Dienones. Chemistry 2015; 21:18921-4. [DOI: 10.1002/chem.201503530] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2015] [Indexed: 12/28/2022]
Affiliation(s)
- Yuan Wei
- Engineering Research Centre of Pharmaceutical Process Chemistry, Ministry of Education, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237 (P. R. China)
| | - Zunwu Liu
- Engineering Research Centre of Pharmaceutical Process Chemistry, Ministry of Education, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237 (P. R. China)
| | - Xinxin Wu
- Engineering Research Centre of Pharmaceutical Process Chemistry, Ministry of Education, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237 (P. R. China)
| | - Jie Fei
- Engineering Research Centre of Pharmaceutical Process Chemistry, Ministry of Education, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237 (P. R. China)
| | - Xiaodong Gu
- Engineering Research Centre of Pharmaceutical Process Chemistry, Ministry of Education, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237 (P. R. China)
| | - Xiaoqian Yuan
- Engineering Research Centre of Pharmaceutical Process Chemistry, Ministry of Education, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237 (P. R. China)
| | - Jinxing Ye
- Engineering Research Centre of Pharmaceutical Process Chemistry, Ministry of Education, School of Pharmacy, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237 (P. R. China)
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Poulsen PH, Feu KS, Paz BM, Jensen F, Jørgensen KA. Organocatalytic Asymmetric 1,6-Addition/1,4-Addition Sequence to 2,4-Dienals for the Synthesis of Chiral Chromans. Angew Chem Int Ed Engl 2015; 54:8203-7. [DOI: 10.1002/anie.201503370] [Citation(s) in RCA: 84] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/14/2015] [Indexed: 11/07/2022]
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Poulsen PH, Feu KS, Paz BM, Jensen F, Jørgensen KA. Organocatalytic Asymmetric 1,6-Addition/1,4-Addition Sequence to 2,4-Dienals for the Synthesis of Chiral Chromans. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201503370] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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12
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Hashimoto T, Nakatsu H, Maruoka K. Catalytic Asymmetric Diels-Alder Reaction of Quinone Imine Ketals: A Site-Divergent Approach. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201410957] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
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13
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Hashimoto T, Nakatsu H, Maruoka K. Catalytic Asymmetric Diels-Alder Reaction of Quinone Imine Ketals: A Site-Divergent Approach. Angew Chem Int Ed Engl 2015; 54:4617-21. [DOI: 10.1002/anie.201410957] [Citation(s) in RCA: 42] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2014] [Revised: 01/20/2015] [Indexed: 12/28/2022]
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14
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Akagawa K, Suzuki R, Kudo K. Development of a Peptide-Based Primary Aminocatalyst with a Helical Structure. ASIAN J ORG CHEM 2014. [DOI: 10.1002/ajoc.201400028] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
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