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Ting CY, Kolbeck PT, Colombo R, Chakiath C, Rice M, Marelli M, Christie RJ. Cyclopentadiene as a Multifunctional Reagent for Normal- and Inverse-Electron Demand Diels-Alder Bioconjugation. Bioconjug Chem 2022; 33:1609-1619. [PMID: 35943835 DOI: 10.1021/acs.bioconjchem.2c00222] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Optimizing the Diels-Alder (DA) reaction for aqueous coupling has resulted in practical methods to link molecules such as drugs and diagnostic agents to proteins. Both normal electron demand (NED) and inverse electron demand (IED) DA coupling schemes have been employed, but neither mechanism entails a common multipurpose reactive group. This report focuses on expanding the bioconjugation toolbox for cyclopentadiene through the identification of reactive groups that couple through NED or IED mechanisms in aqueous solution. Dienophiles and tetrazine derivatives were screened for reactivity and selectivity toward antibodies bearing cyclopentadiene amino acids to yield bioconjugates. Twelve NED dienophiles and four tetrazine-based IED substrates were identified as capable of practical biocoupling. Furthermore, tetrazine ligation to cyclopentadiene occurred at a rate of 3.3 ± 0.5 M-1 s-1 and was capable of bioorthogonal transformations, as evidenced by the selective protein labeling in serum. Finally, an antibody-drug conjugate (ADC)-bearing monomethyl auristatin E was prepared via tetrazine conjugation to cyclopentadiene. The resulting ADC was stable and demonstrated potent activity in vitro. These findings expand the utility of cyclopentadiene as a tool to couple entities to proteins via dual DA addition mechanisms.
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Affiliation(s)
- Cheng-Yueh Ting
- AstraZeneca R&D, Biologics Engineering, Gaithersburg, Maryland 20878, United States
| | - Paul T Kolbeck
- AstraZeneca R&D, Biologics Engineering, Gaithersburg, Maryland 20878, United States
| | - Raffaele Colombo
- AstraZeneca R&D, Biologics Engineering, Gaithersburg, Maryland 20878, United States
| | - Chacko Chakiath
- AstraZeneca R&D, Biologics Engineering, Gaithersburg, Maryland 20878, United States
| | - Megan Rice
- AstraZeneca R&D, Biologics Engineering, Gaithersburg, Maryland 20878, United States
| | - Marcello Marelli
- AstraZeneca R&D, Biologics Engineering, Gaithersburg, Maryland 20878, United States
| | - R James Christie
- AstraZeneca R&D, Biologics Engineering, Gaithersburg, Maryland 20878, United States
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2
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Adak AK, Huang KT, Liao CY, Lee YJ, Kuo WH, Huo YR, Li PJ, Chen YJ, Chen BS, Chen YJ, Chu Hwang K, Wayne Chang WS, Lin CC. Investigating a Boronate-Affinity-Guided Acylation Reaction for Labelling Native Antibodies. Chemistry 2022; 28:e202104178. [PMID: 35143090 DOI: 10.1002/chem.202104178] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2021] [Indexed: 12/12/2022]
Abstract
The excellent molecular recognition capabilities of monoclonal antibodies (mAbs) have opened up exciting opportunities for biotherapeutic discovery. Taking advantage of the full potential of this tool necessitates affinity ligands capable of conjugating directly with small molecules to a defined degree of biorthogonality, especially when modifying natural Abs. Herein, a bioorthogonal boronate-affinity-based Ab ligand featuring a 4-(dimethylamino)pyridine and an S-aryl thioester to label full-length Abs is reported. The photoactivatable linker in the acyl donor facilitated purification of azide-labelled Ab (N3 -Ab) was quantitatively cleaved upon brief exposure to UV light while retaining the original Ab activity. Click reactions enabled the precise addition of biotin, a fluorophore, and a pharmacological agent to the purified N3 -Abs. The resulting immunoconjugate showed selectivity against targeted cells. Bioorthogonal traceless design and reagentless purification allow this strategy to be a powerful tool to engineer native antibodies amenable to therapeutic intervention.
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Affiliation(s)
- Avijit K Adak
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan
| | - Kuan-Ting Huang
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan
| | - Chien-Yu Liao
- National Institute of Cancer Research, National Health Research Institutes, Miaoli, 350, Taiwan
| | - Yuan-Jung Lee
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan
| | - Wen-Hua Kuo
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan
| | - Yi-Ren Huo
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan
| | - Pei-Jhen Li
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan
| | - Yi-Ju Chen
- Institute of Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan
| | - Bo-Shiun Chen
- Institute of Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan
| | - Yu-Ju Chen
- Institute of Chemistry, Academia Sinica, Nankang, Taipei 115, Taiwan
| | - Kuo Chu Hwang
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan
| | - Wun-Shang Wayne Chang
- National Institute of Cancer Research, National Health Research Institutes, Miaoli, 350, Taiwan
| | - Chun-Cheng Lin
- Department of Chemistry, National Tsing Hua University, Hsinchu, 300, Taiwan.,Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung, 807, Taiwan
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3
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Pelay‐Gimeno M, Bange T, Hennig S, Grossmann TN. In Situ Cyclization of Native Proteins: Structure-Based Design of a Bicyclic Enzyme. Angew Chem Int Ed Engl 2018; 57:11164-11170. [PMID: 29847004 PMCID: PMC6120448 DOI: 10.1002/anie.201804506] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2018] [Indexed: 01/07/2023]
Abstract
Increased tolerance of enzymes towards thermal and chemical stress is required for many applications and can be achieved by macrocyclization of the enzyme resulting in the stabilizing of its tertiary structure. Thus far, macrocyclization approaches utilize a very limited structural diversity, which complicates the design process. Herein, we report an approach that enables cyclization through the installation of modular crosslinks into native proteins composed entirely of proteinogenic amino acids. Our stabilization procedure involves the introduction of three surface-exposed cysteine residues, which are reacted with a triselectrophile, resulting in the in situ cyclization of the protein (INCYPRO). A bicyclic version of sortase A was designed that exhibits increased tolerance towards thermal as well as chemical denaturation, and proved to be efficient in protein labeling under denaturing conditions. In addition, we applied INCYPRO to the KIX domain, resulting in up to 24 °C increased thermal stability.
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Affiliation(s)
- Marta Pelay‐Gimeno
- Department of Chemistry & Pharmaceutical SciencesVU University AmsterdamDe Boelelaan 11081081 HZAmsterdamThe Netherlands
| | - Tanja Bange
- Department of Mechanistic Cell BiologyMax-Planck Institute of Molecular PhysiologyOtto-Hahn-Str. 1144227DortmundGermany
- Department for Systems ChronobiologyLMU MunichGoethe-Str. 3180336MunichGermany
| | - Sven Hennig
- Department of Chemistry & Pharmaceutical SciencesVU University AmsterdamDe Boelelaan 11081081 HZAmsterdamThe Netherlands
| | - Tom N. Grossmann
- Department of Chemistry & Pharmaceutical SciencesVU University AmsterdamDe Boelelaan 11081081 HZAmsterdamThe Netherlands
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4
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Pelay-Gimeno M, Bange T, Hennig S, Grossmann TN. In Situ Cyclization of Native Proteins: Structure-Based Design of a Bicyclic Enzyme. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201804506] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Marta Pelay-Gimeno
- Department of Chemistry & Pharmaceutical Sciences; VU University Amsterdam; De Boelelaan 1108 1081 HZ Amsterdam The Netherlands
| | - Tanja Bange
- Department of Mechanistic Cell Biology; Max-Planck Institute of Molecular Physiology; Otto-Hahn-Str. 11 44227 Dortmund Germany
- Department for Systems Chronobiology; LMU Munich; Goethe-Str. 31 80336 Munich Germany
| | - Sven Hennig
- Department of Chemistry & Pharmaceutical Sciences; VU University Amsterdam; De Boelelaan 1108 1081 HZ Amsterdam The Netherlands
| | - Tom N. Grossmann
- Department of Chemistry & Pharmaceutical Sciences; VU University Amsterdam; De Boelelaan 1108 1081 HZ Amsterdam The Netherlands
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5
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Christoffers J. Diaminoterephthalate Fluorescence Dyes - Versatile Tools for Life Sciences and Materials Science. European J Org Chem 2018. [DOI: 10.1002/ejoc.201701447] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Jens Christoffers
- Institut für Chemie; Carl von Ossietzky Universität Oldenburg; 26111 Oldenburg Germany
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6
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Li Y, Sun S, Fan L, Hu S, Huang Y, Zhang K, Nie Z, Yao S. Peptide Logic Circuits Based on Chemoenzymatic Ligation for Programmable Cell Apoptosis. Angew Chem Int Ed Engl 2017; 56:14888-14892. [DOI: 10.1002/anie.201708327] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2017] [Indexed: 12/29/2022]
Affiliation(s)
- Yong Li
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Sujuan Sun
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Lin Fan
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Shanfang Hu
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Yan Huang
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Ke Zhang
- Department of Chemistry and Chemical Biology; Northeastern University; Boston MA 02115 USA
- Institute of Chemical Biology and Nanomedicine; Hunan University; Changsha 410081 P. R. China
| | - Zhou Nie
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Shouzhou Yao
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
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7
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Li Y, Sun S, Fan L, Hu S, Huang Y, Zhang K, Nie Z, Yao S. Peptide Logic Circuits Based on Chemoenzymatic Ligation for Programmable Cell Apoptosis. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201708327] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Yong Li
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Sujuan Sun
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Lin Fan
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Shanfang Hu
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Yan Huang
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Ke Zhang
- Department of Chemistry and Chemical Biology; Northeastern University; Boston MA 02115 USA
- Institute of Chemical Biology and Nanomedicine; Hunan University; Changsha 410081 P. R. China
| | - Zhou Nie
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
| | - Shouzhou Yao
- State Key Laboratory of Chemo/Biosensing and Chemometrics; College of Chemistry and Chemical Engineering; Hunan University; Changsha 410082 P. R. China
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Patterson D, Schwarz B, Avera J, Western B, Hicks M, Krugler P, Terra M, Uchida M, McCoy K, Douglas T. Sortase-Mediated Ligation as a Modular Approach for the Covalent Attachment of Proteins to the Exterior of the Bacteriophage P22 Virus-like Particle. Bioconjug Chem 2017; 28:2114-2124. [PMID: 28612603 PMCID: PMC6708598 DOI: 10.1021/acs.bioconjchem.7b00296] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Virus-like particles are unique platforms well suited for the construction of nanomaterials with broad-range applications. The research presented here describes the development of a modular approach for the covalent attachment of protein domains to the exterior of the versatile bacteriophage P22 virus-like particle (VLP) via a sortase-mediated ligation strategy. The bacteriophage P22 coat protein was genetically engineered to incorporate an LPETG amino acid sequence on the C-terminus, providing the peptide recognition sequence utilized by the sortase enzyme to catalyze peptide bond formation between the LPETG-tagged protein and a protein containing a polyglycine sequence on the N-terminus. Here we evaluate attachment of green fluorescent protein (GFP) and the head domain of the influenza hemagglutinin (HA) protein by genetically producing polyglycine tagged proteins. Attachment of both proteins to the exterior of the P22 VLP was found to be highly efficient as judged by SDS-PAGE densitometry. These results enlarge the tool kit for modifying the P22 VLP system and provide new insights for other VLPs that have an externally displayed C-terminus that can use the described strategy for the modular modification of their external surface for various applications.
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Affiliation(s)
- Dustin Patterson
- Department of Chemistry & Biochemistry, University of Texas at Tyler, Tyler, Texas 75799, United States
| | - Benjamin Schwarz
- Department of Chemistry, Indiana University, Bloomington, Indiana 47407, United States
| | - John Avera
- Department of Chemistry, Indiana University, Bloomington, Indiana 47407, United States
| | - Brian Western
- Department of Chemistry & Biochemistry, University of Texas at Tyler, Tyler, Texas 75799, United States
| | - Matthew Hicks
- Department of Chemistry & Biochemistry, University of Texas at Tyler, Tyler, Texas 75799, United States
| | - Paul Krugler
- Department of Chemistry & Biochemistry, University of Texas at Tyler, Tyler, Texas 75799, United States
| | - Matthew Terra
- Department of Chemistry & Biochemistry, University of Texas at Tyler, Tyler, Texas 75799, United States
| | - Masaki Uchida
- Department of Chemistry, Indiana University, Bloomington, Indiana 47407, United States
| | - Kimberly McCoy
- Department of Chemistry, Indiana University, Bloomington, Indiana 47407, United States
| | - Trevor Douglas
- Department of Chemistry, Indiana University, Bloomington, Indiana 47407, United States
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9
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Wang HH, Altun B, Nwe K, Tsourkas A. Proximity-Based Sortase-Mediated Ligation. Angew Chem Int Ed Engl 2017. [DOI: 10.1002/ange.201701419] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Hejia Henry Wang
- Department of Biochemistry and Biophysics; Perelman School of Medicine; University of Pennsylvania; Philadelphia PA 19104 USA
| | - Burcin Altun
- Department of Bioengineering; University of Pennsylvania; 210 S. 33rd Street, 240 Skirkanich Hall Philadelphia PA 19104 USA
| | - Kido Nwe
- Department of Bioengineering; University of Pennsylvania; 210 S. 33rd Street, 240 Skirkanich Hall Philadelphia PA 19104 USA
| | - Andrew Tsourkas
- Department of Bioengineering; University of Pennsylvania; 210 S. 33rd Street, 240 Skirkanich Hall Philadelphia PA 19104 USA
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10
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Wang HH, Altun B, Nwe K, Tsourkas A. Proximity-Based Sortase-Mediated Ligation. Angew Chem Int Ed Engl 2017; 56:5349-5352. [PMID: 28374553 DOI: 10.1002/anie.201701419] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2017] [Revised: 03/10/2017] [Indexed: 01/31/2023]
Abstract
Protein bioconjugation has been a crucial tool for studying biological processes and developing therapeutics. Sortase A (SrtA), a bacterial transpeptidase, has become widely used for its ability to site-specifically label proteins with diverse functional moieties, but a significant limitation is its poor reaction kinetics. In this work, we address this by developing proximity-based sortase-mediated ligation (PBSL), which improves the ligation efficiency to over 95 % by linking the target protein to SrtA using the SpyTag-SpyCatcher peptide-protein pair. By expressing the target protein with SpyTag C-terminal to the SrtA recognition motif, it can be covalently captured by an immobilized SpyCatcher-SrtA fusion protein during purification. Following the ligation reaction, SpyTag is cleaved off, rendering PBSL traceless, and only the labeled protein is released, simplifying target protein purification and labeling to a single step.
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Affiliation(s)
- Hejia Henry Wang
- Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA
| | - Burcin Altun
- Department of Bioengineering, University of Pennsylvania, 210 S. 33rd Street, 240 Skirkanich Hall, Philadelphia, PA, 19104, USA
| | - Kido Nwe
- Department of Bioengineering, University of Pennsylvania, 210 S. 33rd Street, 240 Skirkanich Hall, Philadelphia, PA, 19104, USA
| | - Andrew Tsourkas
- Department of Bioengineering, University of Pennsylvania, 210 S. 33rd Street, 240 Skirkanich Hall, Philadelphia, PA, 19104, USA
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11
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Freimuth L, Christoffers J. Bifunctional Diaminoterephthalate Scaffolds as Fluorescence Turn-On Probes for Thiols. Chemistry 2015; 21:8214-21. [DOI: 10.1002/chem.201500494] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Indexed: 11/12/2022]
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