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Townsend P, Farrar EHE, Grayson MN. Eliminating Transition State Calculations for Faster and More Accurate Reactivity Prediction in Sulfa-Michael Additions Relevant to Human Health and the Environment. ACS OMEGA 2022; 7:26945-26951. [PMID: 35936424 PMCID: PMC9352231 DOI: 10.1021/acsomega.2c03739] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 07/04/2022] [Indexed: 06/15/2023]
Abstract
Fast and accurate computational approaches to predicting reactivity in sulfa-Michael additions are required for high-throughput screening in toxicology (e.g., predicting excess aquatic toxicity and skin sensitization), chemical synthesis, covalent drug design (e.g., targeting cysteine), and data set generation for machine learning. The kinetic glutathione chemoassay is a time-consuming in chemico method used to extract kinetic data in the form of log(k GSH) for organic electrophiles. In this work, we use density functional theory to compare the use of transition states (TSs) and enolate intermediate structures following C-S bond formation in the prediction of log(k GSH) for a diverse group of 1,4 Michael acceptors. Despite the widespread use of transition state calculations in the literature to predict sulfa-Michael reactivity, we observe that intermediate structures show much better performance for the prediction of log(k GSH), are faster to calculate, and easier to obtain than TSs. Furthermore, we show how linear combinations of atomic charges from the isolated Michael acceptors can further improve predictions, even when using inexpensive semiempirical quantum chemistry methods. Our models can be used widely in the chemical sciences (e.g., in the prediction of toxicity relevant to the environment and human health, synthesis planning, and the design of cysteine-targeting covalent inhibitors), and represent a low-cost, sustainable approach to reactivity assessment.
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Affiliation(s)
- Piers
A. Townsend
- Centre
for Sustainable Chemical Technologies, Department of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K.
- Department
of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K.
| | - Elliot H. E. Farrar
- Department
of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K.
| | - Matthew N. Grayson
- Department
of Chemistry, University of Bath, Claverton Down, Bath BA2 7AY, U.K.
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2
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Maslovskaya LA, Savchenko AI, Krenske EH, Chow S, Holt T, Gordon VA, Reddell PW, Pierce CJ, Parsons PG, Boyle GM, Kutateladze AG, Williams CM. EBC-232 and 323: A Structural Conundrum Necessitating Unification of Five In Silico Prediction and Elucidation Methods. Chemistry 2020; 26:11862-11867. [PMID: 32864777 DOI: 10.1002/chem.202001884] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 06/08/2020] [Indexed: 12/12/2022]
Abstract
Structurally unique halimanes EBC-232 and EBC-323, isolated from the Australian rainforest plant Croton insularis, proved considerably difficult to elucidate. The two diastereomers, which consist an unusual oxo-6,7-spiro ring system fused to a dihydrofuran, were solved by unification and consultation of five in silico NMR elucidation and prediction methods [i.e., ACDLabs, olefin strain energy (OSE), DP4, DU8+ and TD DFT CD]. Structure elucidation challenges of this nature are prime test case examples for empowering future AI learning in structure elucidation.
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Affiliation(s)
- Lidia A Maslovskaya
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia.,QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Andrei I Savchenko
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
| | - Elizabeth H Krenske
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
| | - Sharon Chow
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
| | - Tina Holt
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO, 80208, USA
| | - Victoria A Gordon
- EcoBiotics Limited, PO Box 1, Yungaburra, 4884, Queensland, Australia
| | - Paul W Reddell
- EcoBiotics Limited, PO Box 1, Yungaburra, 4884, Queensland, Australia
| | - Carly J Pierce
- QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Peter G Parsons
- QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Glen M Boyle
- QIMR Berghofer Medical Research Institute, PO Royal Brisbane Hospital, Brisbane, 4029, Australia
| | - Andrei G Kutateladze
- Department of Chemistry and Biochemistry, University of Denver, Denver, CO, 80208, USA
| | - Craig M Williams
- School of Chemistry and Molecular Biosciences, University of Queensland, Brisbane, 4072, Australia
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3
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Linne Y, Schönwald A, Weißbach S, Kalesse M. Desymmetrization of C 2 -Symmetric Bis(Boronic Esters) by Zweifel Olefinations. Chemistry 2020; 26:7998-8002. [PMID: 32068298 PMCID: PMC7384159 DOI: 10.1002/chem.202000599] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2020] [Indexed: 02/05/2023]
Abstract
anti‐Configured 1,3‐dimethyl deoxypropionate motifs are important sub structures in natural products. Herein, we describe a bidirectional approach for the rapid construction of natural products featuring such motifs by using C2‐symmetrical 1,3‐bis(boronic esters). As for its application in convergent syntheses it was important to establish a selective mono‐Zweifel olefination we describe the scope and limitations by using different 1,3‐bis(boronic esters) and nucleophiles. This protocol takes advantage of the combination of the Hoppe–Matteson–Zweifel chemistry, which was elegantly put into practice by Aggarwal et al. In order to show its applicability the total syntheses of two natural products, serricornin and (+)‐invictolide, were performed.
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Affiliation(s)
- Yannick Linne
- Institute for Organic Chemistry, Gottfried Wilhelm Leibniz Universität Hannover, Schneiderberg 1B, 30167, Hannover, Germany.,Centre of Biomolecular Drug Research (BMWZ), Gottfried Wilhelm Leibniz Universität Hannover, Schneiderberg 38, 30167, Hannover, Germany
| | - Axel Schönwald
- Institute for Organic Chemistry, Gottfried Wilhelm Leibniz Universität Hannover, Schneiderberg 1B, 30167, Hannover, Germany
| | - Sebastian Weißbach
- Institute for Organic Chemistry, Gottfried Wilhelm Leibniz Universität Hannover, Schneiderberg 1B, 30167, Hannover, Germany
| | - Markus Kalesse
- Institute for Organic Chemistry, Gottfried Wilhelm Leibniz Universität Hannover, Schneiderberg 1B, 30167, Hannover, Germany.,Centre of Biomolecular Drug Research (BMWZ), Gottfried Wilhelm Leibniz Universität Hannover, Schneiderberg 38, 30167, Hannover, Germany.,Helmholtz Centre for Infection Research (HZI), Inhoffenstrasse 7, 38124, Braunschweig, Germany
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Gu Y, Duan Y, Shen Y, Martin R. Stereoselective Base‐Catalyzed 1,1‐Silaboration of Terminal Alkynes. Angew Chem Int Ed Engl 2020; 59:2061-2065. [DOI: 10.1002/anie.201913544] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2019] [Indexed: 02/06/2023]
Affiliation(s)
- Yiting Gu
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
| | - Yaya Duan
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
| | - Yangyang Shen
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
| | - Ruben Martin
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
- Catalan Institution for Research and Advanced Studies (ICREA) Passeig Lluïs Companys, 23 08010 Barcelona Spain
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5
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Gu Y, Duan Y, Shen Y, Martin R. Stereoselective Base‐Catalyzed 1,1‐Silaboration of Terminal Alkynes. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201913544] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Yiting Gu
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
| | - Yaya Duan
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
| | - Yangyang Shen
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
| | - Ruben Martin
- Institute of Chemical Research of Catalonia (ICIQ)The Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
- Catalan Institution for Research and Advanced Studies (ICREA) Passeig Lluïs Companys, 23 08010 Barcelona Spain
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