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Cornelison JL, Cato ML, Johnson AM, D'Agostino EH, Melchers D, Patel AB, Mays SG, Houtman R, Ortlund EA, Jui NT. Development of a new class of liver receptor homolog-1 (LRH-1) agonists by photoredox conjugate addition. Bioorg Med Chem Lett 2020; 30:127293. [PMID: 32631515 PMCID: PMC7701997 DOI: 10.1016/j.bmcl.2020.127293] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 05/26/2020] [Accepted: 05/27/2020] [Indexed: 12/24/2022]
Abstract
LRH-1 is a nuclear receptor that regulates lipid metabolism and homeostasis, making it an attractive target for the treatment of diabetes and non-alcoholic fatty liver disease. Building on recent structural information about ligand binding from our labs, we have designed a series of new LRH-1 agonists that further engage LRH-1 through added polar interactions. While the current synthetic approach to this scaffold has, in large part, allowed for decoration of the agonist core, significant variation of the bridgehead substituent is mechanistically precluded. We have developed a new synthetic approach to overcome this limitation, identified that bridgehead substitution is necessary for LRH-1 activation, and described an alternative class of bridgehead substituents for effective LRH-1 agonist development. We determined the crystal structure of LRH-1 bound to a bridgehead-modified compound, revealing a promising opportunity to target novel regions of the ligand binding pocket to alter LRH-1 target gene expression.
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Affiliation(s)
| | - Michael L Cato
- Department of Biochemistry, Emory University, Atlanta, GA 30322, United States
| | - Alyssa M Johnson
- Department of Chemistry, Emory University, Atlanta, GA 30322, United States
| | - Emma H D'Agostino
- Department of Biochemistry, Emory University, Atlanta, GA 30322, United States
| | - Diana Melchers
- Precision Medicine Lab, Pivot Park, Antoni van Leeuwenhoek Building, Office1131/lab1333, Kloosterstraat 9, 5349 AB Oss, the Netherlands
| | - Anamika B Patel
- Department of Biochemistry, Emory University, Atlanta, GA 30322, United States
| | - Suzanne G Mays
- Department of Biochemistry, Emory University, Atlanta, GA 30322, United States
| | - René Houtman
- Precision Medicine Lab, Pivot Park, Antoni van Leeuwenhoek Building, Office1131/lab1333, Kloosterstraat 9, 5349 AB Oss, the Netherlands
| | - Eric A Ortlund
- Department of Biochemistry, Emory University, Atlanta, GA 30322, United States.
| | - Nathan T Jui
- Department of Chemistry, Emory University, Atlanta, GA 30322, United States.
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Mays SG, Flynn AR, Cornelison JL, Okafor CD, Wang H, Wang G, Huang X, Donaldson HN, Millings EJ, Polavarapu R, Moore DD, Calvert JW, Jui NT, Ortlund EA. Development of the First Low Nanomolar Liver Receptor Homolog-1 Agonist through Structure-guided Design. J Med Chem 2019; 62:11022-11034. [PMID: 31419141 PMCID: PMC10026690 DOI: 10.1021/acs.jmedchem.9b00753] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
As a key regulator of metabolism and inflammation, the orphan nuclear hormone receptor, liver receptor homolog-1 (LRH-1), has potential as a therapeutic target for diabetes, nonalcoholic fatty liver disease, and inflammatory bowel diseases (IBD). Discovery of LRH-1 modulators has been difficult, in part due to the tendency for synthetic compounds to bind unpredictably within the lipophilic binding pocket. Using a structure-guided approach, we exploited a newly discovered polar interaction to lock agonists in a consistent orientation. This enabled the discovery of the first low nanomolar LRH-1 agonist, one hundred times more potent than the best previous modulator. We elucidate a novel mechanism of action that relies upon specific polar interactions deep in the LRH-1 binding pocket. In an organoid model of IBD, the new agonist increases expression of LRH-1-controlled steroidogenic genes and promotes anti-inflammatory gene expression changes. These studies constitute major progress in developing LRH-1 modulators with potential clinical utility.
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Affiliation(s)
- Suzanne G. Mays
- Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA
| | - Autumn R. Flynn
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, USA
| | | | - C. Denise Okafor
- Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA
| | - Hongtao Wang
- Department of Pediatrics, Section of Gastroenterology, Baylor College of Medicine and Texas Children’s Hospital, Houston, Texas 77030, USA
| | - Guohui Wang
- Department of Pediatrics, Section of Gastroenterology, Baylor College of Medicine and Texas Children’s Hospital, Houston, Texas 77030, USA
| | - Xiangsheng Huang
- Department of Pediatrics, Section of Gastroenterology, Baylor College of Medicine and Texas Children’s Hospital, Houston, Texas 77030, USA
| | - Heather N. Donaldson
- Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA
| | - Elizabeth J. Millings
- Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA
- Department of Surgery, Carlyle Fraser Heart Center, Emory University, Atlanta, Georgia 30322, USA
| | - Rohini Polavarapu
- Department of Surgery, Carlyle Fraser Heart Center, Emory University, Atlanta, Georgia 30322, USA
| | - David D. Moore
- Department of Molecular and Cell Biology, Baylor College of Medicine, Houston, Texas 77030, USA
| | - John W. Calvert
- Department of Surgery, Carlyle Fraser Heart Center, Emory University, Atlanta, Georgia 30322, USA
| | - Nathan T. Jui
- Department of Chemistry, Emory University, Atlanta, Georgia 30322, USA
| | - Eric A. Ortlund
- Department of Biochemistry, Emory University School of Medicine, Atlanta, Georgia 30322, USA
- Corresponding Author Eric A. Ortlund, 1525 Clifton Rd. G235, Atlanta, GA 30322,
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Yan X, Zhou Y, Xi C. Reactivity of Alkynylzirconate toward α,β-Unsaturated Carbonyl Compounds. Organometallics 2013. [DOI: 10.1021/om301176e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Xiaoyu Yan
- Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China
| | - Yiqing Zhou
- Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China
| | - Chanjuan Xi
- Key Laboratory of Bioorganic Phosphorus Chemistry & Chemical Biology (Ministry of Education), Department of Chemistry, Tsinghua University, Beijing 100084, People’s Republic of China
- State
Key Laboratory of Elemento-Organic
Chemistry, Nankai University, Tianjin 300071,
People’s Republic of China
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Stec J, Thomas E, Dixon S, Whitby RJ. Tandem insertion of halocarbenoids and lithium acetylides into zirconacycles: a novel rearrangement to zirconium alkenylidenates by β-addition to an alkynyl zirconocene. Chemistry 2011; 17:4896-904. [PMID: 21425365 DOI: 10.1002/chem.201002962] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2010] [Indexed: 11/08/2022]
Abstract
Tandem insertion of 1,1-dihalo-1-lithio species (halocarbenoids) and lithium alkynides into zirconacyclopentenes and zirconcyclopentanes affords carbocyclic products in high yields via an unusual rearrangement that probably involves addition of an organolithium species to the β-position of a zirconium-alkyne complex to give an alkenylidene-zirconate species. A wide variety of cyclopentanoid organic structures are rapidly assembled in good yield using this multicomponent coupling. The main side reaction, which becomes exclusive in some cases, is β-hydride elimination of an intermediate cyclopentyl- or cyclopentenyl zirconocene.
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Affiliation(s)
- Jozef Stec
- School of Chemistry, University of Southampton, Highfield, Southampton, Hampshire SO17 1BJ, UK
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Whitby RJ, Stec J, Blind RD, Dixon S, Leesnitzer LM, Orband-Miller LA, Williams SP, Willson TM, Xu R, Zuercher WJ, Cai F, Ingraham HA. Small molecule agonists of the orphan nuclear receptors steroidogenic factor-1 (SF-1, NR5A1) and liver receptor homologue-1 (LRH-1, NR5A2). J Med Chem 2011; 54:2266-81. [PMID: 21391689 DOI: 10.1021/jm1014296] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The crystal structure of LRH-1 ligand binding domain bound to our previously reported agonist 3-(E-oct-4-en-4-yl)-1-phenylamino-2-phenyl-cis-bicyclo[3.3.0]oct-2-ene 5 is described. Two new classes of agonists in which the bridgehead anilino group from our first series was replaced with an alkoxy or 1-ethenyl group were designed, synthesized, and tested for activity in a peptide recruitment assay. Both new classes gave very active compounds, particularly against SF-1. Structure-activity studies led to excellent dual-LRH-1/SF-1 agonists (e.g., RJW100) as well as compounds selective for LRH-1 (RJW101) and SF-1 (RJW102 and RJW103). The series based on 1-ethenyl substitution was acid stable, overcoming a significant drawback of our original bridgehead anilino-substituted series. Initial studies on the regulation of gene expression in human cell lines showed excellent, reproducible activity at endogenous target genes.
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Affiliation(s)
- Richard J Whitby
- School of Chemistry, University of Southampton, Southampton, Hants, SO17 1BJ, United Kingdom.
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Yan X, Zhou Y, Xi C. Reactivity of alkynylzirconates towards allyl bromides: selective formation of β-allyl-zirconacyclopentadienes. Chem Commun (Camb) 2010; 46:7801-3. [DOI: 10.1039/c0cc02997a] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Xi C, Yan X, You W, Takahashi T. Coupling Reactions of Zirconate Complexes Induced by Carbonyl Compounds. Angew Chem Int Ed Engl 2009; 48:8120-3. [DOI: 10.1002/anie.200904255] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Xi C, Yan X, You W, Takahashi T. Coupling Reactions of Zirconate Complexes Induced by Carbonyl Compounds. Angew Chem Int Ed Engl 2009. [DOI: 10.1002/ange.200904255] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Tsoglin E, Chechik H, Karseboom G, Chinkov N, Stanger A, Marek I. Stereoselective Synthesis of Metalated Cyclobutyl Derivatives. Adv Synth Catal 2009. [DOI: 10.1002/adsc.200800719] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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