A Hydrogen-Bonded Hexameric Nanotoroidal Assembly

Solid-State Self-Assembly: Exclusive Formation and Dynamic Interconversion of Discrete Cyclic Assemblies Based on Molecular Tweezers

In contrast to self-assembly in solution systems, the construction of well-defined assemblies in the solid state has long been identified as a challenging task. Herein, we report the formation of tweezers-shaped molecules into various assemblies through a solid-state self-assembly strategy. The relatively flexible molecular tweezers undergo exclusive and quantitative assembly into either cyclic hexamers or a porous network through classical recrystallization or the exposure of powders to solvent vapor, despite the fact that they form only dimers in solution. The cyclic hexamers have high thermal stability and exhibit moderate solid-state fluorescence. The formation of heterologous assemblies consisting of different tweezers allows for tuning these solid-state properties of the cyclic hexamer. Furthermore, (trimethylsilyl)ethynyl-substituted tweezers demonstrate solvent-vapor-induced dynamic interconversion between the cyclic hexamer and a pseudocyclic dimer in the solid state. This assembly behavior, which has been studied extensively in solution-based supramolecular chemistry, had not been accomplished in the solid state so far.

Iridium-Catalyzed C-H Borylations: Regioselective Functionalizations of Calix[4]arene Macrocycles

We report iridium-catalyzed C-H borylations for the regioselective synthesis of distally disubstituted calix[4]arene macrocycles. The atom- and step-economical method led to a broad family of calix[4]arenes in good yields and functional group tolerance. The synthetic utility of the C-H borylation protocol was finally illustrated with several late-stage modifications for the synthesis of elaborate calix[4]arenes frameworks, otherwise challenging to achieve with commonly employed procedures.

Bent-bis(triazolyl)-based coordination polymers tuned by dicarboxylate ligands: syntheses, structures and properties

Seven new coordination polymers based on the bent 1,1'-(oxybis(1,4-phenylene))-bis(1H-1,2,4-triazole) ligand, with diverse structures and novel topologies, that are directed by the dicarboxylate ligands.

Auxiliary ligand-modulated trisimidazole-based coordination polymers: syntheses, structures and photoluminescence properties

Five coordination polymers having 1,3,5-tris(1-imidazolyl)benzene and the varied O-donor auxiliary ligands were designed and synthesized. Further, the auxiliary ligands modulated these complexes with structural diversities and novel topologies.

Supramolecular-Macrocycle-Based Crystalline Organic Materials

Supramolecular macrocycles are well known as guest receptors in supramolecular chemistry, especially host-guest chemistry. In addition to their wide applications in host-guest chemistry and related areas, macrocycles have also been employed to construct crystalline organic materials (COMs) owing to their particular structures that combine both rigidity and adaptivity. There are two main types of supramolecular-macrocycle-based COMs: those constructed from macrocycles themselves and those prepared from macrocycles with other organic linkers. This review summarizes recent developments in supramolecular-macrocycle-based COMs, which are categorized by various types of macrocycles, including cyclodextrins, calixarenes, resorcinarenes, pyrogalloarenes, cucurbiturils, pillararenes, and others. Effort is made to focus on the structures of supramolecular-macrocycle-based COMs and their structure-function relationships. In addition, the application of supramolecular-macrocycle-based COMs in gas storage or separation, molecular separation, solid-state electrolytes, proton conduction, iodine capture, water or environmental treatment, etc., are also presented. Finally, perspectives and future challenges in the field of supramolecular-macrocycle-based COMs are discussed.

Conversion of curved assemblies into two dimensional sheets

The design and preparation of organic two dimensional (O2D) sheets and their conversion to curved nanostructures is in its infancy. To convert a flat structure into a curved structure, the molecule must have multiple interaction possibilities and an in-built twist. The conjugated small molecule iso-Indigo (i-Indigo) comprises two phenyl rings that are twisted (the dihedral angle is 15°) at the junction. The i-Indigo has been connected with moieties that impart hydrogen bonding and van der Waals interactions. Due to the presence of the π cloud in i-Indigo, π-π interactions are also present in the molecule. While all three interactions are in operation, rings and toroids are formed. Upon addition of hydrogen bonding competing solvents, the rings and toroids unravel to form O2D sheets. Control molecules that don't have hydrogen bonding moieties and π-π interactions form random assemblies. Please note that the rings, toroids and O2D sheets are formed in a single solvent by simple dissolution, unlike previous approaches that involve multiple steps and solvents.

The synthesis and characterization of giant Calixarenes

Calixarenes are cyclic oligomers obtained by condensation of suitable p-functionalised phenols with formaldehyde, usually allowing for the synthesis of the well known small calixarenes (including up to eight phenolic subunits). We report here the discovery of much larger members of this family, exhibiting sizes up to 90 phenolic subunits: the giant calixarenes. These macrocycles are obtained according to simple, easily scalable processes, in yields up to 65%. We show that the formation of these giant macrocycles is favored by an oxygen-containing-group at the para-position of the starting phenol, high concentrations of heavy alkaline bases (rubidium or cesium hydroxides) and long reaction times. A mechanism is proposed to rationalize these observations. These giant macrocycles can also be obtained in the quasi-solid state, opening interesting perspectives in the field of calixarenes chemistry. Along with their intrinsic fundamental interest, these objects are also opening interesting applicative potentialities.

Structural Transformations of Amino-Acid-Based Polymers: Syntheses and Structural Characterization

A discrete complex [Zn(tpro)₂(H₂O)₂] (1, Htpro = l-thioproline), and two structural isomers of coordination polymers, a 1D chain of [Zn(tpro)₂]_n (2) and a layered structure [Zn(tpro)₂]_n (3), were synthesized and characterized. The discrete complex 1 undergoes a temperature-driven structural transformation, leading to the formation of a 1D helical coordination polymer 2. Compound 3 is comprised of a 2D homochiral layer network with a (4,4) topology. These layers are mutually linked through hydrogen bonding interactions, resulting in the formation of a 3D network. When 1 is heated, it undergoes nearly complete conversion to the microcrystalline form, i.e., compound 2, which was confirmed by powder X-ray diffractions (PXRD). The carboxylate motifs could be activated after removing the coordinated water molecules by heating at temperatures of up to 150 °C, their orientations becoming distorted, after which, they attacked the activation sites of the Zn(II) centers, leading to the formation of a 1D helix. Moreover, a portion of the PXRD pattern of 1 was converted into the patterns corresponding to 2 and 3, and the ratio between 2 and 3 was precisely determined by the simulation study of in-situ synchrotron PXRD expriments. Consequently, such a 0D complex is capable of underdoing structural transformations and can be converted into 1D and/or 2D amino acid-based coordination polymers.

Synthesis and Structures of Triptycene-Derived Oxacalixarenes with Expanded Cavities: Tunable and Switchable Complexation towards Bipyridinium Salts

New triptycene-derived oxacalixarene H1 was efficiently synthesized by a template cyclization step, and anilino-substituted macrocycle H2 was subsequently afforded through straightforward nucleophilic displacement of the active chlorine atom in H1. Oxacalixarene H1 adopts a fixed boat-like 1,3-alternate conformation and shows moderate complexation abilities towards various bipyridinium salts. However, the affinities of H2 towards the guests were found to be substantially stronger, which could be tentatively attributed to the additional hydrogen-bonding site, π-π stacking site, and especially the increased electron richness of the host. Furthermore, the acid-base switchable complexation process between H1 and the bipyridinium salt was also realized, which could potentially facilitate the construction of high-level stimuli-responsive supramolecular structures based on the newly synthesized oxacalixarene.

Macromolecular Crystallography for Synthetic Abiological Molecules: Combining xMDFF and PHENIX for Structure Determination of Cyanostar Macrocycles

Crystal structure determination has long provided insight into structure and bonding of small molecules. When those same small molecules are designed to come together in multimolecular assemblies, such as in coordination cages, supramolecular architectures and organic-based frameworks, their crystallographic characteristics closely resemble biological macromolecules. This resemblance suggests that biomacromolecular refinement approaches be used for structure determination of abiological molecular complexes that arise in an aggregate state. Following this suggestion we investigated the crystal structure of a pentagonal macrocycle, cyanostar, by means of biological structure analysis methods and compared results to traditional small molecule methods. Cyanostar presents difficulties seen in supramolecular crystallography including whole molecule disorder and highly flexible solvent molecules sitting in macrocyclic and intermolecule void spaces. We used the force-field assisted refinement method, molecular dynamics flexible fitting algorithm for X-ray crystallography (xMDFF), along with tools from the macromolecular structure determination suite PHENIX. We found that a standard implementation of PHENIX, namely one without xMDFF, either fails to produce a solution by molecular replacement alone or produces an inaccurate structure when using generic geometry restraints, even at a very high diffraction data resolution of 0.84 Å. The problems disappear when taking advantage of xMDFF, which applies an optimized force field to realign molecular models during phasing by providing accurate restraints. The structure determination for this model system shows excellent agreement with the small-molecule methods. Therefore, the joint xMDFF-PHENIX refinement protocol provides a new strategy that uses macromolecule methods for structure determination of small molecules and their assemblies.

‘Honeycomb’ nanotube assembly based on thiacalix[4]arene derivatives by weak interactions

Crystallisation of six thiacalix[4]arene derivatives from hexane–chloroform leads to ‘honeycomb’ nanotube architectures and each tubular stack is surrounded by six close tubular neighbours via weak interactions, such as S⋯π interactions, C–H⋯π interactions, and so on.

Self-assembling triazolophanes: from croissants through donuts to spherical vesicles

A detailed ultramicroscopic analysis of three novel triazolophanes demonstrated a hierarchical self-assembly mechanism. These macrocycles self-assemble in a concentration dependent manner to hemi-toroids, toroids and finally to vesicles. The finding was supported by ultramicroscopy and X-ray crystal structure studies.

Structure modeling, synthesis and X-ray diffraction determination of an extra-large calixarene-based coordination cage and its application in drug delivery

An extra-large octahedral calixarene-based coordination cage was modeled by the isomorphic replacement approach from a known structure of a smaller size. And then it was successfully synthesized and determined.

Formation of ring-in-ring complexes between crown ethers and rigid TVBox8+

An octacationic tetraviologen-based cyclophane—so called TVBox⁸⁺—can form a ring-in-ring complex with bis-1,5-dinaphtho[50]crown-14, which represents a key intermediate for constructing molecular Borromean rings in a stepwise manner.

A Series of Enthalpy/Entropy-Driven Reversible Dissolution/Reorganization Equilibriums in the System of Cu(NO3)2–HL–GdX3–H2O (HL=5-methylpyrazine-2-carboxylic acid; X=Cl, Br, NO3, ClO4)

Five coordination polymers, [Cu(L)2]n (1), {[Cu(L)(Cl)(H2O)]·H2O}2n (2), [KCu(L)(μ-Cl)2]n (3), [Cu(L)(Br)H2O]n (4), and {[Cu0.5(HL)(H2O)](NO3)·H2O}2n (5) (HL = 5-methylpyrazine-2-carboxylic acid) were obtained by reactions of a pyramidal CuII-containing ligand, {[Cu(L)2(H2O)]·3H2O}n (LCu), with Gd(ClO4)3·6H2O, GdCl3·6H2O, GdCl3·6H2O/KCl, GdBr3·6H2O, or Gd(NO3)3·6H2O in water. Structural analysis reveals that the structures of these compounds range from a 0D block to a 2D network with modification of the environment of the CuII ions compared with LCu. Interestingly, there occurred a series of reversible dissolution/reorganization equilibriums between the initial reactants and the final products 1–5, which were determined as enthalpy/entropy driven chemical equilibriums by single crystal X-ray diffraction and microcalorimetry. In addition, the thermal stability of 1–4 and the magnetic property of 2 are discussed.

Construction of cucurbit[7]uril based tubular nanochannels incorporating associated [CdCl4]2- and lanthanide ions

There is intensive interest in the design of tubular channels because of their novel structures and various applications in a variety of research fields. Herein, we present a series of coordination-driven Q[7]-derived organic nanochannels using an anion-induced strategy under different acid concentrations. An advantage of this approach is that the tubular channels not only retain the original character of the parent macrocyclic receptors but also provide deep hydrophobic cavities possessing guest binding sites. Importantly, this study also emphasizes the efficiency of the macrocyclic receptors in providing a tubular hydrophobic cavity by directly stacking on top of one another with the anion-fixed and by acid control. The resulting combination of hydrogen bonding, C-H···Cl, and ion-dipole interactions helps to stabilize these supramolecular architectures. Such systems are both tunable and versatile and allow for interconvertibility in the construction of nanochannels based on these macrocyclic receptors.

Cucurbit[8]uril mediated donor-acceptor ternary complexes: a model system for studying charge-transfer interactions

A supramolecular self-assembly approach is described which allows for the convenient preparation of a wide range of charge-transfer (CT) donor-acceptor complexes in aqueous solutions. When one equiv of the macrocyclic host cucurbit[8]uril (CB[8]) is added to an aqueous donor and acceptor solution, a heteroternary complex forms inside the host's cavity with a well-defined face-to-face π-π-stacking geometry of the donor and acceptor. This heteroternary, CB[8]-mediated complex offers the opportunity to study the CT phenomena at low concentrations and free from complications arising from any donor-donor and acceptor-acceptor interactions as a result of the large binding affinities and the very high selectivity over the formation of these homoternary complexes. Thus, this supramolocular self-assembly strategy is a practical donor-acceptor mix-and-match approach with synthetic advantages over much more cumbersome tethering schemes. While the characteristic UV/vis features of a few CB[8] ternary systems had been described as a CT band, we present for the first time systematic evidence for the existence of CT interactions between several donor-acceptor pairs that are mediated by the host CB[8]. Correlation of the experimentally obtained CT λ(max) to computed HOMO-LUMO energies demonstrated that the CT process in the host's cavity can be described by the Mulliken model. Furthermore, the literature claim of a "CT driving force" for the formation of CB[8] ternary complexes was scrutinized and evaluated by calorimetric (ITC) and ESI-MS measurements. The findings indicated that neither in the aqueous medium nor in the "gas-phase" is CT of energetic relevance to the Gibbs free binding energy. In contrast, electrostatic considerations combined with solvation effects are much better suited to rationalize the observed trends in binding affinities. Additionally, the CT λ(max) was found to be much more red-shifted (≥75 nm) inside the CB[8] cavity than in any polar organic solvents or water, indicating a significant stabilization of the CT excited state within the host cavity, further demonstrating the unique electrostatic, polar properties of the host cavity.