1
|
Amiri A, Abedanzadeh S, Davaeil B, Shaabani A, Moosavi-Movahedi AA. Protein click chemistry and its potential for medical applications. Q Rev Biophys 2024; 57:e6. [PMID: 38619322 DOI: 10.1017/s0033583524000027] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2024]
Abstract
A revolution in chemical biology occurred with the introduction of click chemistry. Click chemistry plays an important role in protein chemistry modifications, providing specific, sensitive, rapid, and easy-to-handle methods. Under physiological conditions, click chemistry often overlaps with bioorthogonal chemistry, defined as reactions that occur rapidly and selectively without interfering with biological processes. Click chemistry is used for the posttranslational modification of proteins based on covalent bond formations. With the contribution of click reactions, selective modification of proteins would be developed, representing an alternative to other technologies in preparing new proteins or enzymes for studying specific protein functions in different biological processes. Click-modified proteins have potential in diverse applications such as imaging, labeling, sensing, drug design, and enzyme technology. Due to the promising role of proteins in disease diagnosis and therapy, this review aims to highlight the growing applications of click strategies in protein chemistry over the last two decades, with a special emphasis on medicinal applications.
Collapse
Affiliation(s)
- Ahmad Amiri
- Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran
| | | | - Bagher Davaeil
- Institute of Biochemistry and Biophysics (IBB), University of Tehran, Tehran, Iran
| | - Ahmad Shaabani
- Department of Chemistry, Shahid Beheshti University, Tehran, Iran
| | | |
Collapse
|
2
|
Rai R, Sureshan KM. Topochemical Synthesis of a Heterochiral Peptide Polymer in Different Polymorphic Forms from Crystals and Aerogels. Angew Chem Int Ed Engl 2022; 61:e202111623. [DOI: 10.1002/anie.202111623] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2021] [Indexed: 12/16/2022]
Affiliation(s)
- Rishika Rai
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| | - Kana M. Sureshan
- School of Chemistry Indian Institute of Science Education and Research Thiruvananthapuram Kerala 695551 India
| |
Collapse
|
3
|
Sureshan KM, Rai R. Topochemical Synthesis of a Heterochiral Peptide Polymer in Different Polymorphic Forms from Crystals and Aerogels. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202111623] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kana M Sureshan
- Indian Institute of Science Education and Research Thiruvananthapuram School of Chemistry ThiruvananthapuramMaruthamalaVithura 695551 Thiruvananthapuram INDIA
| | - Rishika Rai
- IISER-TVM: Indian Institute of Science Education Research Thiruvananthapuram Chemistry 695551 Thiruvananthapuram INDIA
| |
Collapse
|
4
|
Staśkiewicz A, Ledwoń P, Rovero P, Papini AM, Latajka R. Triazole-Modified Peptidomimetics: An Opportunity for Drug Discovery and Development. Front Chem 2021; 9:674705. [PMID: 34095086 PMCID: PMC8172596 DOI: 10.3389/fchem.2021.674705] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 04/06/2021] [Indexed: 12/18/2022] Open
Abstract
Peptidomimetics play a fundamental role in drug design due to their preferential properties regarding natural peptides. In particular, compounds possessing nitrogen-containing heterocycles have been intensively studied in recent years. The triazolyl moiety incorporation decreases the molecule susceptibility to enzymatic degradation, reduction, hydrolysis, and oxidation. In fact, peptides containing triazole rings are a typical example of peptidomimetics. They have all the advantages over classic peptides. Both efficient synthetic methods and biological activity make these systems an interesting and promising object of research. Peptide triazole derivatives display a diversity of biological properties and can be obtained via numerous synthetic strategies. In this review, we have highlighted the importance of the triazole-modified peptidomimetics in the field of drug design. We present an overview on new achievements in triazolyl-containing peptidomimetics synthesis and their biological activity as inhibitors of enzymes or against cancer, viruses, bacteria, or fungi. The relevance of above-mentioned compounds was confirmed by their comparison with unmodified peptides.
Collapse
Affiliation(s)
- Agnieszka Staśkiewicz
- Department of Bioorganic Chemistry, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Chemistry “Ugo Schiff”, University of Florence, Firenze, Italy
| | - Patrycja Ledwoń
- Department of Bioorganic Chemistry, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Neurosciences, Psychology, Drug Research and Child Health-Section of Pharmaceutical Sciences and Nutraceutics, University of Florence, Firenze, Italy
| | - Paolo Rovero
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Neurosciences, Psychology, Drug Research and Child Health-Section of Pharmaceutical Sciences and Nutraceutics, University of Florence, Firenze, Italy
| | - Anna Maria Papini
- Interdepartmental Research Unit of Peptide and Protein Chemistry and Biology, Department of Chemistry “Ugo Schiff”, University of Florence, Firenze, Italy
| | - Rafal Latajka
- Department of Bioorganic Chemistry, Faculty of Chemistry, Wroclaw University of Science and Technology, Wroclaw, Poland
| |
Collapse
|
5
|
Agouram N, El Hadrami EM, Bentama A. 1,2,3-Triazoles as Biomimetics in Peptide Science. Molecules 2021; 26:2937. [PMID: 34069302 PMCID: PMC8156386 DOI: 10.3390/molecules26102937] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 05/05/2021] [Accepted: 05/05/2021] [Indexed: 01/10/2023] Open
Abstract
Natural peptides are an important class of chemical mediators, essential for most vital processes. What limits the potential of the use of peptides as drugs is their low bioavailability and enzymatic degradation in vivo. To overcome this limitation, the development of new molecules mimicking peptides is of great importance for the development of new biologically active molecules. Therefore, replacing the amide bond in a peptide with a heterocyclic bioisostere, such as the 1,2,3-triazole ring, can be considered an effective solution for the synthesis of biologically relevant peptidomimetics. These 1,2,3-triazoles may have an interesting biological activity, because they behave as rigid link units, which can mimic the electronic properties of amide bonds and show bioisosteric effects. Additionally, triazole can be used as a linker moiety to link peptides to other functional groups.
Collapse
Affiliation(s)
- Naima Agouram
- Laboratory of Applied Organic Chemistry, Faculty of Science and Technology, Sidi Mohammed Ben Abdellah University, Immouzer Road, Fez 30050, Morocco; (E.M.E.H.); (A.B.)
| | | | | |
Collapse
|
6
|
Grob N, Schibli R, Béhé M, Valverde IE, Mindt TL. 1,5-Disubstituted 1,2,3-Triazoles as Amide Bond Isosteres Yield Novel Tumor-Targeting Minigastrin Analogs. ACS Med Chem Lett 2021; 12:585-592. [PMID: 33859799 PMCID: PMC8040048 DOI: 10.1021/acsmedchemlett.0c00636] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2020] [Accepted: 03/08/2021] [Indexed: 12/12/2022] Open
Abstract
1,5-Disubstituted 1,2,3-triazoles (1,5-Tz) are considered bioisosteres of cis-amide bonds. However, their use for enhancing the pharmacological properties of peptides or proteins is not yet well established. Aiming to illustrate their utility, we chose the peptide conjugate [Nle15]MG11 (DOTA-dGlu-Ala-Tyr-Gly-Trp-Nle-Asp-Phe-NH2) as a model compound since it is known that the cholecystokinin-2 receptor (CCK2R) is able to accommodate turn conformations. Analogs of [Nle15]MG11 incorporating 1,5-Tz in the backbone were synthesized and radiolabeled with lutetium-177, and their pharmacological properties (cell internalization, receptor binding affinity and specificity, plasma stability, and biodistribution) were evaluated and compared with [Nle15]MG11 as well as their previously reported analogs bearing 1,4-disubstituted 1,2,3-triazoles. Our investigations led to the discovery of novel triazole-modified analogs of [Nle15]MG11 with nanomolar CCK2R-binding affinity and 2-fold increased tumor uptake. This study illustrates that substitution of amides by 1,5-disubstituted 1,2,3-triazoles is an effective strategy to enhance the pharmacological properties of biologically active peptides.
Collapse
Affiliation(s)
- Nathalie
M. Grob
- Department
of Chemistry and Applied Biosciences, ETH
Zurich, 8093 Zürich, Switzerland
| | - Roger Schibli
- Department
of Chemistry and Applied Biosciences, ETH
Zurich, 8093 Zürich, Switzerland
- Center
for Radiopharmaceutical Sciences, Division of Biology and Chemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland
| | - Martin Béhé
- Center
for Radiopharmaceutical Sciences, Division of Biology and Chemistry, Paul Scherrer Institute, 5232 Villigen, Switzerland
| | - Ibai E. Valverde
- Institut
de Chimie Moléculaire de l’Université de Bourgogne,
UMR CNRS 6302, Université de Bourgogne Franche-Comté, 21000 Dijon, France
| | - Thomas L. Mindt
- Ludwig
Boltzmann Institute Applied Diagnostics, General Hospital of Vienna, 1090 Vienna, Austria
- Department
of Inorganic Chemistry, Faculty of Chemistry, University of Vienna, 1090 Vienna, Austria
- Department
of Biomedical Imaging and Image Guided Therapy, Medical University of Vienna, 1090 Vienna, Austria
| |
Collapse
|
7
|
Louwsma J, Carvalho A, Lutz JF, Joly S, Chan-Seng D. Adsorption of phenylalanine-rich sequence-defined oligomers onto Kevlar fibers for fiber-reinforced polyolefin composite materials. POLYMER 2021. [DOI: 10.1016/j.polymer.2021.123465] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
|
8
|
Shin J, Jung H, Lim Y. Competitive CuAAC Reaction between Hydrophobic and Hydrophilic Alkynes with Azides in Water. ChemistrySelect 2020. [DOI: 10.1002/slct.202002792] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Jung‐Ah Shin
- The 4th R&D Institute-6 Agency for Defense Development Daejeon 34186 Korea
| | - Haeji Jung
- The 4th R&D Institute-6 Agency for Defense Development Daejeon 34186 Korea
| | - Yeong‐Gweon Lim
- The 4th R&D Institute-6 Agency for Defense Development Daejeon 34186 Korea
| |
Collapse
|
9
|
Rečnik LM, Kandioller W, Mindt TL. 1,4-Disubstituted 1,2,3-Triazoles as Amide Bond Surrogates for the Stabilisation of Linear Peptides with Biological Activity. Molecules 2020; 25:E3576. [PMID: 32781656 PMCID: PMC7465391 DOI: 10.3390/molecules25163576] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2020] [Revised: 08/03/2020] [Accepted: 08/04/2020] [Indexed: 12/20/2022] Open
Abstract
Peptides represent an important class of biologically active molecules with high potential for the development of diagnostic and therapeutic agents due to their structural diversity, favourable pharmacokinetic properties, and synthetic availability. However, the widespread use of peptides and conjugates thereof in clinical applications can be hampered by their low stability in vivo due to rapid degradation by endogenous proteases. A promising approach to circumvent this potential limitation includes the substitution of metabolically labile amide bonds in the peptide backbone by stable isosteric amide bond mimetics. In this review, we focus on the incorporation of 1,4-disubstituted 1,2,3-triazoles as amide bond surrogates in linear peptides with the aim to increase their stability without impacting their biological function(s). We highlight the properties of this heterocycle as a trans-amide bond surrogate and summarise approaches for the synthesis of triazole-containing peptidomimetics via the Cu(I)-catalysed azide-alkyne cycloaddition (CuAAC). The impacts of the incorporation of triazoles in the backbone of diverse peptides on their biological properties such as, e.g., blood serum stability and affinity as well as selectivity towards their respective molecular target(s) are discussed.
Collapse
Affiliation(s)
- Lisa-Maria Rečnik
- Ludwig Boltzmann Institute Applied Diagnostics, General Hospital Vienna, 1090 Vienna, Austria;
- Institute of Inorganic Chemistry, Faculty of Chemistry, University of Vienna, 1090 Vienna, Austria;
- Department of Biomedical Imaging and Image Guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, 1090 Vienna, Austria
| | - Wolfgang Kandioller
- Institute of Inorganic Chemistry, Faculty of Chemistry, University of Vienna, 1090 Vienna, Austria;
| | - Thomas L. Mindt
- Ludwig Boltzmann Institute Applied Diagnostics, General Hospital Vienna, 1090 Vienna, Austria;
- Institute of Inorganic Chemistry, Faculty of Chemistry, University of Vienna, 1090 Vienna, Austria;
- Department of Biomedical Imaging and Image Guided Therapy, Division of Nuclear Medicine, Medical University of Vienna, 1090 Vienna, Austria
| |
Collapse
|
10
|
Kim WG, Baek SY, Jeong SY, Nam D, Jeon JH, Choe W, Baik MH, Hong SY. Chemo- and regioselective click reactions through nickel-catalyzed azide–alkyne cycloaddition. Org Biomol Chem 2020; 18:3374-3381. [DOI: 10.1039/d0ob00579g] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Nickel-catalyzed [3 + 2] cycloaddition reactions of unsymmetrical alkynes and organic azides afford substituted 1,2,3-triazoles with high levels of chemo- and regioselectivity.
Collapse
Affiliation(s)
- Woo Gyum Kim
- School of Energy and Chemical Engineering
- Ulsan National Institute of Science and Technology
- Ulsan 44919
- Republic of Korea
| | - Seung-yeol Baek
- Department of Chemistry
- Korea Advanced Institute of Science and Technology
- Daejeon 34141
- Republic of Korea
- Center for Catalytic Hydrocarbon Functionalizations
| | - Seo Yeong Jeong
- School of Energy and Chemical Engineering
- Ulsan National Institute of Science and Technology
- Ulsan 44919
- Republic of Korea
| | - Dongsik Nam
- Department of Chemistry
- Ulsan National Institute of Science and Technology
- Ulsan 44919
- Republic of Korea
| | - Ji Hwan Jeon
- School of Energy and Chemical Engineering
- Ulsan National Institute of Science and Technology
- Ulsan 44919
- Republic of Korea
| | - Wonyoung Choe
- Department of Chemistry
- Ulsan National Institute of Science and Technology
- Ulsan 44919
- Republic of Korea
| | - Mu-Hyun Baik
- Department of Chemistry
- Korea Advanced Institute of Science and Technology
- Daejeon 34141
- Republic of Korea
- Center for Catalytic Hydrocarbon Functionalizations
| | - Sung You Hong
- School of Energy and Chemical Engineering
- Ulsan National Institute of Science and Technology
- Ulsan 44919
- Republic of Korea
- Department of Chemistry
| |
Collapse
|
11
|
Chow HY, Zhang Y, Matheson E, Li X. Ligation Technologies for the Synthesis of Cyclic Peptides. Chem Rev 2019; 119:9971-10001. [PMID: 31318534 DOI: 10.1021/acs.chemrev.8b00657] [Citation(s) in RCA: 136] [Impact Index Per Article: 27.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Abstract
Cyclic peptides have been attracting a lot of attention in recent decades, especially in the area of drug discovery, as more and more naturally occurring cyclic peptides with diverse biological activities have been discovered. Chemical synthesis of cyclic peptides is essential when studying their structure-activity relationships. Conventional peptide cyclization methods via direct coupling have inherent limitations, like the susceptibility to epimerization at the C-terminus, poor solubility of fully protected peptide precursors, and low yield caused by oligomerization. In this regard, chemoselective ligation-mediated cyclization methods have emerged as effective strategies for cyclic peptide synthesis. The toolbox for cyclic peptide synthesis has been expanded substantially in the past two decades, allowing more efficient synthesis of cyclic peptides with various scaffolds and modifications. This Review will explore different chemoselective ligation technologies used for cyclic peptide synthesis that generate both native and unnatural peptide linkages. The practical issues and limitations of different methods will be discussed. The advance in cyclic peptide synthesis will benefit the biological and medicinal study of cyclic peptides, an important class of macrocycles with potentials in numerous fields, notably in therapeutics.
Collapse
Affiliation(s)
- Hoi Yee Chow
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry , The University of Hong Kong , Pokfulam Road , Hong Kong SAR , P. R. China
| | - Yue Zhang
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry , The University of Hong Kong , Pokfulam Road , Hong Kong SAR , P. R. China
| | - Eilidh Matheson
- School of Chemistry , University of Edinburgh , Edinburgh EH8 9LE , United Kingdom
| | - Xuechen Li
- Department of Chemistry, State Key Laboratory of Synthetic Chemistry , The University of Hong Kong , Pokfulam Road , Hong Kong SAR , P. R. China.,Laboratory for Marine Drugs and Bioproducts , Qingdao National Laboratory for Marine Science and Technology , Qingdao 266237 , P. R. China
| |
Collapse
|
12
|
Kofoed C, Riesenberg S, Šmolíková J, Meldal M, Schoffelen S. Semisynthesis of an Active Enzyme by Quantitative Click Ligation. Bioconjug Chem 2019; 30:1169-1174. [PMID: 30883092 DOI: 10.1021/acs.bioconjchem.9b00110] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
The incorporation of clickable noncanonical amino acids (ncAAs) has proven to an invaluable tool in chemical biology and protein science research. Nevertheless, the number of examples in which the method is used for preparative purposes is extremely limited. We report the synthesis of an active enzyme by quantitative, Cu(I)-catalyzed ligation of two inactive protein halves, expressed and equipped with an azide and alkyne moiety, respectively, through ncAA incorporation. The reported quantitative conversion is exceptional given the large size of the protein fragments and the fact that no linker or excess of either of the polypeptides was used. The triazole bridge formed between the ncAA side chains was shown to effectively mimic a natural protein loop, providing an enzyme with the same activity as its natural counterpart. We envision that this strategy, termed split-click protein chemistry, can be used for the production of proteins that are difficult to express as full-length entities. It also paves the way for the design of new proteins with tailor-made functionalities.
Collapse
Affiliation(s)
- Christian Kofoed
- Center for Evolutionary Chemical Biology, Department of Chemistry , University of Copenhagen , Universitetsparken 5 , 2100 Copenhagen , Denmark
| | - Stephan Riesenberg
- Center for Evolutionary Chemical Biology, Department of Chemistry , University of Copenhagen , Universitetsparken 5 , 2100 Copenhagen , Denmark
| | - Jaroslava Šmolíková
- Center for Evolutionary Chemical Biology, Department of Chemistry , University of Copenhagen , Universitetsparken 5 , 2100 Copenhagen , Denmark
| | - Morten Meldal
- Center for Evolutionary Chemical Biology, Department of Chemistry , University of Copenhagen , Universitetsparken 5 , 2100 Copenhagen , Denmark
| | - Sanne Schoffelen
- Center for Evolutionary Chemical Biology, Department of Chemistry , University of Copenhagen , Universitetsparken 5 , 2100 Copenhagen , Denmark
| |
Collapse
|
13
|
Ben Haj Salah K, Das S, Ruiz N, Andreu V, Martinez J, Wenger E, Amblard M, Didierjean C, Legrand B, Inguimbert N. How are 1,2,3-triazoles accommodated in helical secondary structures? Org Biomol Chem 2019; 16:3576-3583. [PMID: 29693098 DOI: 10.1039/c8ob00686e] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Abstract
1,4-Disubstituted-1,2,3-triazole (Tz) is widely used in peptides as a trans-amide bond mimic, despite having hazardous effects on the native peptide activity. The impact of amide bond substitution by Tz on peptide secondary structures is scarcely documented. We performed a Tz scan, by systematically replacing peptide bonds following the Aib residues with Tz on two model peptaibols: alamethicin F50/5 and bergofungin D, which adopt stable α- and 310 helices, respectively. We observed that the Tz insertion, whatever its position in the peptide sequences, abolished their antimicrobial activity. The structural consequences of this insertion were further investigated using CD, NMR and X-ray diffraction. Importantly, five crystal structures that were incorporated with Tz were solved, showing various degrees of alteration of the helical structures, from minor structural perturbation of the helix to partial disorder. Together, these results showed that Tz insertions impair helical secondary structures.
Collapse
Affiliation(s)
- Khoubaib Ben Haj Salah
- USR 3278 CRIOBE, PSL Research University, EPHE-UPVD-CNRS, Université de Perpignan Via Domitia, Laboratoire d'Excellence «CORAIL». Bâtiment T, 58 avenue P. Alduy, 66860 Perpignan, France.
| | | | | | | | | | | | | | | | | | | |
Collapse
|
14
|
Lombardo CM, Kumar M. V. V, Douat C, Rosu F, Mergny JL, Salgado GF, Guichard G. Design and Structure Determination of a Composite Zinc Finger Containing a Nonpeptide Foldamer Helical Domain. J Am Chem Soc 2019; 141:2516-2525. [DOI: 10.1021/jacs.8b12240] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Caterina Maria Lombardo
- Univ. Bordeaux, CNRS, CBMN, UMR 5248, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33607 Pessac, France
| | - Vasantha Kumar M. V.
- Univ. Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33076 Pessac, France
| | - Céline Douat
- Univ. Bordeaux, CNRS, CBMN, UMR 5248, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33607 Pessac, France
| | - Frédéric Rosu
- Institut Européen de Chimie et Biologie, UMS3033/US001, Univ. Bordeaux, INSERM, CNRS, 2 rue Robert Escarpit, 33076 Pessac, France
| | - Jean-Louis Mergny
- Univ. Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33076 Pessac, France
| | - Gilmar F. Salgado
- Univ. Bordeaux, Inserm, CNRS, ARNA Laboratory, U1212, UMR 5320, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33076 Pessac, France
| | - Gilles Guichard
- Univ. Bordeaux, CNRS, CBMN, UMR 5248, Institut Européen de Chimie et Biologie, 2 rue Robert Escarpit, 33607 Pessac, France
| |
Collapse
|
15
|
Uchida K, Yoshida S, Hosoya T. Synthetic Aryne Chemistry toward Multicomponent Coupling. J SYN ORG CHEM JPN 2019. [DOI: 10.5059/yukigoseikyokaishi.77.145] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Suguru Yoshida
- Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University
| | - Takamitsu Hosoya
- Institute of Biomaterials and Bioengineering, Tokyo Medical and Dental University
| |
Collapse
|
16
|
Hosoya T, Yoshida S, Nishiyama Y, Misawa Y, Hazama Y, Oya K. Synthesis of Diverse 3-Azido-5-(azidomethyl)benzene Derivatives via Formal C–H Azidation and Functional Group-Selective Transformations. HETEROCYCLES 2019. [DOI: 10.3987/com-18-s(f)72] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
|
17
|
Kent SBH. Novel protein science enabled by total chemical synthesis. Protein Sci 2018; 28:313-328. [PMID: 30345579 DOI: 10.1002/pro.3533] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2018] [Revised: 10/12/2018] [Accepted: 10/15/2018] [Indexed: 01/01/2023]
Abstract
Chemical synthesis is a well-established method for the preparation in the research laboratory of multiple-tens-of-milligram amounts of correctly folded, high purity protein molecules. Chemically synthesized proteins enable a broad spectrum of novel protein science. Racemic mixtures consisting of d-protein and l-protein enantiomers facilitate crystallization and determination of protein structures by X-ray diffraction. d-Proteins enable the systematic development of unnatural mirror image protein molecules that bind with high affinity to natural protein targets. The d-protein form of a therapeutic target can also be used to screen natural product libraries to identify novel small molecule leads for drug development. Proteins with novel polypeptide chain topologies including branched, circular, linear-loop, and interpenetrating polypeptide chains can be constructed by chemical synthesis. Medicinal chemistry can be applied to optimize the properties of therapeutic protein molecules. Chemical synthesis has been used to redesign glycoproteins and for the a priori design and construction of covalently constrained novel protein scaffolds not found in nature. Versatile and precise labeling of protein molecules by chemical synthesis facilitates effective application of advanced physical methods including multidimensional nuclear magnetic resonance and time-resolved FTIR for the elucidation of protein structure-activity relationships. The chemistries used for total synthesis of proteins have been adapted to making artificial molecular devices and protein-inspired nanomolecular constructs. Research to develop mirror image life in the laboratory is in its very earliest stages, based on the total chemical synthesis of d-protein forms of polymerase enzymes.
Collapse
Affiliation(s)
- Stephen B H Kent
- Department of Chemistry and Department of Biochemistry and Molecular Biology; Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois, 60637
| |
Collapse
|
18
|
Montoir D, Amoura M, Ababsa ZEA, Vishwanatha TM, Yen-Pon E, Robert V, Beltramo M, Piller V, Alami M, Aucagne V, Messaoudi S. Synthesis of aryl-thioglycopeptides through chemoselective Pd-mediated conjugation. Chem Sci 2018; 9:8753-8759. [PMID: 30627396 PMCID: PMC6295873 DOI: 10.1039/c8sc02370k] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2018] [Accepted: 09/18/2018] [Indexed: 12/17/2022] Open
Abstract
We describe herein a Pd-catalyzed methodology for the thioglycoconjugation of iodoaryl peptides and aminoacids. This operationally simple process occurs under semi-aqueous conditions and displays wide substrate scope. The strategy has been successfully applied to both the thioglycosylation of unprotected peptides and the generation of thioglyco-aminoacid building blocks, including those suitable for solid phase peptide synthesis. To demonstrate the broad potential of this technique for late stage functionalization, we successfully incorporated challenging unprotected β-S-GlcNAc- and α-S-GalNAc-derivatives into very long unprotected peptides. This study opens the way to new applications in chemical biology, considering the well-recognized advantages of S-glycosides over O-glycosides in terms of resistance towards both enzymatic and chemical degradation.
Collapse
Affiliation(s)
- David Montoir
- BioCIS , Univ. Paris-Sud , CNRS , Univ. Paris-Saclay , Châtenay-Malabry , France . ; Tel: +33 0146835887
| | - Mehdi Amoura
- Centre de Biophysique Moléculaire , CNRS , Orléans , France . ; Tel: +33 0238255577
| | - Zine El Abidine Ababsa
- BioCIS , Univ. Paris-Sud , CNRS , Univ. Paris-Saclay , Châtenay-Malabry , France . ; Tel: +33 0146835887
| | - T M Vishwanatha
- Centre de Biophysique Moléculaire , CNRS , Orléans , France . ; Tel: +33 0238255577
| | - Expédite Yen-Pon
- BioCIS , Univ. Paris-Sud , CNRS , Univ. Paris-Saclay , Châtenay-Malabry , France . ; Tel: +33 0146835887
| | - Vincent Robert
- UMR Physiologie de la Reproduction et des Comportements , INRA , CNRS , Univ. Tours , IFCE , Nouzilly , France
| | - Massimiliano Beltramo
- UMR Physiologie de la Reproduction et des Comportements , INRA , CNRS , Univ. Tours , IFCE , Nouzilly , France
| | - Véronique Piller
- Centre de Biophysique Moléculaire , CNRS , Orléans , France . ; Tel: +33 0238255577
| | - Mouad Alami
- BioCIS , Univ. Paris-Sud , CNRS , Univ. Paris-Saclay , Châtenay-Malabry , France . ; Tel: +33 0146835887
| | - Vincent Aucagne
- Centre de Biophysique Moléculaire , CNRS , Orléans , France . ; Tel: +33 0238255577
| | - Samir Messaoudi
- BioCIS , Univ. Paris-Sud , CNRS , Univ. Paris-Saclay , Châtenay-Malabry , France . ; Tel: +33 0146835887
| |
Collapse
|
19
|
Szekely T, Roy O, Dériaud E, Job A, Lo-Man R, Leclerc C, Taillefumier C. Design, Synthesis, and Immunological Evaluation of a Multicomponent Construct Based on a Glycotripeptoid Core Comprising B and T Cell Epitopes and a Toll-like Receptor 7 Agonist That Elicits Potent Immune Responses. J Med Chem 2018; 61:9568-9582. [PMID: 30351939 DOI: 10.1021/acs.jmedchem.8b00960] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
We present here for the first time the synthesis and immunological evaluation of a fully synthetic three-component anticancer vaccine candidate that consists of a β-glycotripeptoid core mimicking a cluster of Tn at the surface of tumor cells (B epitope), conjugated to the OVA 323-339 peptide (T-cell epitope) and a Toll-like receptor 7 (TLR7) agonist for potent adjuvanticity. The immunological evaluation of this construct and of precursor components demonstrated the synergistic activity of the components within the conjugate to stimulate innate and adaptive immune cells (DCs, T-helper, and B-cells). Surprisingly, immunization of mice with the tricomponent GalNAc-based construct elicited a low level of anti-Tn IgG but elicited a very high level of antibodies that recognize the TLR7 agonist. This finding could represent a potential vaccine therapeutic approach for the treatment of some autoimmune diseases such as lupus.
Collapse
Affiliation(s)
- Thomas Szekely
- Université Clermont Auvergne, CNRS, SIGMA Clermont, ICCF , F-63000 Clermont-Ferrand , France
| | - Olivier Roy
- Université Clermont Auvergne, CNRS, SIGMA Clermont, ICCF , F-63000 Clermont-Ferrand , France
| | - Edith Dériaud
- Unité Régulation Immunitaire et Vaccinologie, Equipe Labellisée Ligue Contre le Cancer , Institut Pasteur , 75015 Paris , France.,INSERM U1041 , 75724 Paris Cedex 15, France
| | - Aurélie Job
- Université Clermont Auvergne, CNRS, SIGMA Clermont, ICCF , F-63000 Clermont-Ferrand , France
| | - Richard Lo-Man
- Unité Régulation Immunitaire et Vaccinologie, Equipe Labellisée Ligue Contre le Cancer , Institut Pasteur , 75015 Paris , France.,INSERM U1041 , 75724 Paris Cedex 15, France
| | - Claude Leclerc
- Unité Régulation Immunitaire et Vaccinologie, Equipe Labellisée Ligue Contre le Cancer , Institut Pasteur , 75015 Paris , France.,INSERM U1041 , 75724 Paris Cedex 15, France
| | - Claude Taillefumier
- Université Clermont Auvergne, CNRS, SIGMA Clermont, ICCF , F-63000 Clermont-Ferrand , France
| |
Collapse
|
20
|
Hamdan F, Tahoori F, Balalaie S. Synthesis of novel cyclopeptides containing heterocyclic skeletons. RSC Adv 2018; 8:33893-33926. [PMID: 35548835 PMCID: PMC9086729 DOI: 10.1039/c8ra03899f] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2018] [Accepted: 09/14/2018] [Indexed: 01/13/2023] Open
Abstract
Cyclopeptides can be considered as naturally biologically active compounds. Over the last several decades, many attempts have been made to synthesize complex naturally occurring cyclopeptides, and great progress has been achieved to advance the field of total synthesis. Moreover, cyclopeptides containing heterocyclic skeletons have been recently developed into powerful reactions and approaches. This review aims to highlight recent advances in the synthesis of cyclopeptides containing heterocyclic skeletons such as triazole, oxazole, thiazole, and tetrazole.
Collapse
Affiliation(s)
- Fatima Hamdan
- Peptide Chemistry Research Center, K. N. Toosi University of Technology P. O. Box 15875-4416 Tehran Iran
| | - Fatemeh Tahoori
- Razi Vaccine and Serum Research Institute, Agricultural Research, Education and Extension Organization (AREEO) Karaj Iran
| | - Saeed Balalaie
- Peptide Chemistry Research Center, K. N. Toosi University of Technology P. O. Box 15875-4416 Tehran Iran
- Medical Biology Research Center, Kermanshah University of Medical Sciences Kermanshah Iran
| |
Collapse
|
21
|
Abstract
The prospect of recreating the complex structural hierarchy of protein folding in synthetic oligomers with backbones that are artificial in covalent structure ("foldamers") has long fascinated chemists. Foldamers offer complex functions from biostable scaffolds and have found widespread applications in fields from biomedical to materials science. Most precedent has focused on isolated secondary structures or their assemblies. In considering the goal of complex protein-like tertiary folding patterns, a key barrier became apparent. How does one design a backbone with covalent connectivity and a sequence of side-chain functional groups that will support defined intramolecular packing of multiple artificial secondary structures? Two developments were key to overcoming this challenge. First was the recognition of the power of blending α-amino acid residues with monomers differing in backbone connectivity to create "heterogeneous-backbone" foldamers. Second was the finding that replacing some of the natural α-residues in a biological sequence with artificial-backbone variants can result in a mimic that retains both the fold and function of the native sequence and, in some cases, gains advantageous characteristics. Taken together, these precedents lead to a view of a protein as chemical entity having two orthogonal sequences: a sequence of side-chain functional groups and a separate sequence of backbone units displaying those functional groups. In this Account, we describe our lab's work over the last ∼10 years to leverage the above concept of protein sequence duality in order to develop design principles for constructing heterogeneous-backbone foldamers that adopt complex protein-like tertiary folds. Fundamental to the approach is the utilization of a variety of artificial building blocks (e.g., d-α-residues, Cα-Me-α-residues, N-Me-α-residues, β-residues, γ-residues, δ-residues, polymer segments) in concert, replacing a fraction of α-residues in a given prototype sequence. We provide an overview of the state-of-the-art in terms of design principles for choosing substitutions based on consideration of local secondary structure and retention of key side-chain functional groups. We survey high-resolution structures of backbone-modified proteins to illustrate how diverse artificial moieties are accommodated in tertiary fold contexts. We detail efforts to elucidate how backbone alteration impacts folding thermodynamics and describe how such data informs the development of improved design rules. Collectively, a growing body of results by our lab and others spanning multiple protein systems suggests there is a great deal of plasticity with respect to the backbone chemical structures upon which sequence-encoded tertiary folds can manifest. Moreover, these efforts suggest sequence-guided backbone alteration as a broadly applicable strategy for generating foldamers with complex tertiary folding patterns. We conclude by offering some perspective regarding the near future of this field, in terms of unanswered questions, technological needs, and opportunities for new areas of inquiry.
Collapse
Affiliation(s)
- Kelly L. George
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| | - W. Seth Horne
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15260, United States
| |
Collapse
|
22
|
Galibert M, Wartenberg M, Lecaille F, Saidi A, Mavel S, Joulin-Giet A, Korkmaz B, Brömme D, Aucagne V, Delmas AF, Lalmanach G. Substrate-derived triazolo- and azapeptides as inhibitors of cathepsins K and S. Eur J Med Chem 2018; 144:201-210. [DOI: 10.1016/j.ejmech.2017.12.012] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Revised: 11/15/2017] [Accepted: 12/03/2017] [Indexed: 12/17/2022]
|
23
|
Macháčková K, Collinsová M, Chrudinová M, Selicharová I, Pícha J, Buděšínský M, Vaněk V, Žáková L, Brzozowski AM, Jiráček J. Insulin-like Growth Factor 1 Analogs Clicked in the C Domain: Chemical Synthesis and Biological Activities. J Med Chem 2017; 60:10105-10117. [DOI: 10.1021/acs.jmedchem.7b01331] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Affiliation(s)
- Kateřina Macháčková
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Michaela Collinsová
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Martina Chrudinová
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Irena Selicharová
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Jan Pícha
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Miloš Buděšínský
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Václav Vaněk
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Lenka Žáková
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| | - Andrzej M. Brzozowski
- York
Structural Biology Laboratory, Department of Chemistry, The University of York, Heslington, York YO10 5DD, United Kingdom
| | - Jiří Jiráček
- Institute
of Organic Chemistry and Biochemistry, The Czech Academy of Sciences, Flemingovo nám. 2, 166 10 Prague 6, Czech Republic
| |
Collapse
|
24
|
Beltramo M, Decourt C. Towards new strategies to manage livestock reproduction using kisspeptin analogs. Theriogenology 2017; 112:2-10. [PMID: 28916209 DOI: 10.1016/j.theriogenology.2017.08.026] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Revised: 08/29/2017] [Accepted: 08/30/2017] [Indexed: 12/16/2022]
Abstract
The discovery of the hypothalamic neuropeptide kisspeptin and its receptor (KISS1R) have dramatically improved our knowledge about the central mechanisms controlling reproduction. Kisspeptin neurons could be considered the hub where internal and external information controlling reproduction converge. The information is here elaborated and the command dispatched to GnRH neurons, the final output of the brain system controlling reproduction. Several studies have shown that in mammals administration of kisspeptin could finely modulate many aspects of reproduction from puberty to ovulation. For example in ewes kisspeptin infusion triggered ovulation during the non-breeding season and in prepubertal rat repeated injections advanced puberty onset. However, especially in livestock, the suboptimal pharmacological properties of endogenous kisspeptin, notably it short half-life and consequently its poor pharmacodynamics, fetters its use to experimental setting. To overcome this issue synthetic KISS1R agonists, mainly based on kisspeptin backbone, were created. Their more favorable pharmacological profile, longer half-life and duration of action, allowed to perform promising initial experiments for controlling ovulation and puberty. Additional experiments and further refinement of analogs would still be necessary to exploit fully the potential of targeting the kisspeptin system. Nevertheless, it is already clear that this new strategy may represent a breakthrough in the field of reproduction control.
Collapse
Affiliation(s)
- M Beltramo
- INRA, UMR85 Physiologie de la Reproduction et des Comportements, F-37380 Nouzilly, France; CNRS, UMR7247, F-37380 Nouzilly, France; Université François Rabelais de Tours, F-37041 Tours, France; IFCE, F-37380 Nouzilly, France.
| | - C Decourt
- INRA, UMR85 Physiologie de la Reproduction et des Comportements, F-37380 Nouzilly, France; CNRS, UMR7247, F-37380 Nouzilly, France; Université François Rabelais de Tours, F-37041 Tours, France; IFCE, F-37380 Nouzilly, France
| |
Collapse
|
25
|
Kent S. Chemical protein synthesis: Inventing synthetic methods to decipher how proteins work. Bioorg Med Chem 2017; 25:4926-4937. [DOI: 10.1016/j.bmc.2017.06.020] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2017] [Revised: 06/07/2017] [Accepted: 06/13/2017] [Indexed: 12/15/2022]
|
26
|
Krishnan BP, Sureshan KM. Topochemical Azide–Alkyne Cycloaddition Reaction in Gels: Size-Tunable Synthesis of Triazole-Linked Polypeptides. J Am Chem Soc 2017; 139:1584-1589. [DOI: 10.1021/jacs.6b11549] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Baiju P. Krishnan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, CET
Campus, Thiruvananthapuram, Kerala 695016, India
| | - Kana M. Sureshan
- School of Chemistry, Indian Institute of Science Education and Research Thiruvananthapuram, CET
Campus, Thiruvananthapuram, Kerala 695016, India
| |
Collapse
|
27
|
Ma B, Luo W, Lin L, Liu X, Feng X. A chiral cobalt(ii) complex catalyzed asymmetric formal [3+2] cycloaddition for the synthesis of 1,2,4-triazolines. Chem Commun (Camb) 2017; 53:4077-4079. [DOI: 10.1039/c7cc01278k] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
A chiral N,N′-dioxide/Co(BF4)2·6H2O complex catalysed highly efficient asymmetric [3+2] cycloaddition reaction of 5-alkoxyoxazoles with azodicarboxylate compounds.
Collapse
Affiliation(s)
- Baiwei Ma
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
| | - Weiwei Luo
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
| | - Lili Lin
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
| | - Xiaohua Liu
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
| | - Xiaoming Feng
- Key Laboratory of Green Chemistry & Technology
- Ministry of Education
- College of Chemistry
- Sichuan University
- Chengdu 610064
| |
Collapse
|
28
|
Krishnan BP, Rai R, Asokan A, Sureshan KM. Crystal-to-Crystal Synthesis of Triazole-Linked Pseudo-proteins via Topochemical Azide-Alkyne Cycloaddition Reaction. J Am Chem Soc 2016; 138:14824-14827. [PMID: 27791357 DOI: 10.1021/jacs.6b07538] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Isosteric replacement of amide bond(s) of peptides with surrogate groups is an important strategy for the synthesis of peptidomimetics (pseudo-peptides). Triazole is a well-recognized bio-isostere for peptide bonds, and peptides with one or more triazole units are of great interest for different applications. We have used a catalyst-free and solvent-free method, viz., topochemical azide-alkyne cycloaddition (TAAC) reaction, to synthesize pseudo-proteins with repeating sequences. A designed β-sheet-forming l-Ala-l-Val dipeptide containing azide and alkyne at its termini (N3-Ala-Val-NHCH2C≡CH, 1) was synthesized. Single-crystal XRD analysis of the dipeptide 1 showed parallel β-sheet arrangement along the b-direction and head-to-tail arrangement of such β-sheets along the c-direction. This head-to-tail arrangement along the c-direction places the complementary reacting motifs, viz., azide and alkyne, of adjacent molecules in proximity. The crystals of dipeptide 1, upon heating at 85 °C, underwent crystal-to-crystal polymerization, giving 1,4-triazole-linked pseudo-proteins. This TAAC polymerization was investigated by various time-dependent techniques, such as NMR, IR, DSC, and PXRD. The crystal-to-crystal nature of this transformation was revealed from polarizing microscopy and PXRD experiments, and the regiospecificity of triazole formation was evidenced from various NMR techniques. The MALDI-TOF spectrum showed the presence of pseudo-proteins >7 kDa.
Collapse
Affiliation(s)
- Baiju P Krishnan
- School of Chemistry, Indian Institute of Science Education and Research , Thiruvananthapuram, Kerala 695016, India
| | - Rishika Rai
- School of Chemistry, Indian Institute of Science Education and Research , Thiruvananthapuram, Kerala 695016, India
| | - Aromal Asokan
- School of Chemistry, Indian Institute of Science Education and Research , Thiruvananthapuram, Kerala 695016, India
| | - Kana M Sureshan
- School of Chemistry, Indian Institute of Science Education and Research , Thiruvananthapuram, Kerala 695016, India
| |
Collapse
|
29
|
Li S, Cai H, He J, Chen H, Lam S, Cai T, Zhu Z, Bark SJ, Cai C. Extent of the Oxidative Side Reactions to Peptides and Proteins During the CuAAC Reaction. Bioconjug Chem 2016; 27:2315-2322. [DOI: 10.1021/acs.bioconjchem.6b00267] [Citation(s) in RCA: 59] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Siheng Li
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Honghao Cai
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Jilin He
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Haoqing Chen
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Srujana Lam
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Tao Cai
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Zhiling Zhu
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Steven J. Bark
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| | - Chengzhi Cai
- Department of Chemistry and ‡Department of Biology and Biochemistry, University of Houston, 4800 Calhoun Road, Houston, Texas 77204, United States
| |
Collapse
|
30
|
Harmand TJ, Murar CE, Bode JW. Protein chemical synthesis by α-ketoacid–hydroxylamine ligation. Nat Protoc 2016; 11:1130-47. [DOI: 10.1038/nprot.2016.052] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
|
31
|
Valverde IE, Vomstein S, Mindt TL. Toward the Optimization of Bombesin-Based Radiotracers for Tumor Targeting. J Med Chem 2016; 59:3867-77. [PMID: 27054526 DOI: 10.1021/acs.jmedchem.6b00025] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
The peptide bombesin (BBN) is a peptide with high affinity for the gastrin-releasing peptide receptor (GRPr), a receptor that is overexpressed by, for example, breast and prostate cancers. Thus, GRPr agonists can be used as cancer-targeting vectors to shuttle diagnostic and therapeutic agents into tumor cells. With the aim of optimizing the tumor targeting properties of a radiolabeled [Nle(14)]BBN(7-14) moiety, novel BBN(7-14)- and BBN(6-14)-based radioconjugates were synthesized, labeled with Lu-177, and fully evaluated in vitro and in vivo. The effect of residue and backbone modification on several parameters such as the internalization of the radiolabeled peptides into PC3 and AR42J tumor cells, their affinity toward the human GRPr, metabolic stability in blood plasma, and biodistribution in mice bearing GRPr-expressing PC3 xenografts was studied. As a result of our investigations, a novel radiolabeled GRPr agonist with a high tumor uptake and a high tumor-to-kidney ratio was identified.
Collapse
Affiliation(s)
- Ibai E Valverde
- Division of Radiopharmaceutical Chemistry, University of Basel Hospital , Petersgraben 4, 4031 Basel, Switzerland
| | - Sandra Vomstein
- Division of Radiopharmaceutical Chemistry, University of Basel Hospital , Petersgraben 4, 4031 Basel, Switzerland
| | - Thomas L Mindt
- Division of Radiopharmaceutical Chemistry, University of Basel Hospital , Petersgraben 4, 4031 Basel, Switzerland.,Ludwig Boltzmann Institute for Applied Diagnostics, General Hospital of Vienna , Währinger Gürtel 18-20, A-1090 Vienna, Austria
| |
Collapse
|
32
|
Lohani CR, Rasera B, Scott B, Palmer M, Taylor SD. α-Azido Acids in Solid-Phase Peptide Synthesis: Compatibility with Fmoc Chemistry and an Alternative Approach to the Solid Phase Synthesis of Daptomycin Analogs. J Org Chem 2016; 81:2624-8. [PMID: 26938305 DOI: 10.1021/acs.joc.5b02882] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Chuda Raj Lohani
- Department of Chemistry, University of Waterloo, 200 University
Avenue West, Waterloo, Ontario Canada, N2L 3G1
| | - Benjamin Rasera
- Department of Chemistry, University of Waterloo, 200 University
Avenue West, Waterloo, Ontario Canada, N2L 3G1
| | - Bradley Scott
- Department of Chemistry, University of Waterloo, 200 University
Avenue West, Waterloo, Ontario Canada, N2L 3G1
| | - Michael Palmer
- Department of Chemistry, University of Waterloo, 200 University
Avenue West, Waterloo, Ontario Canada, N2L 3G1
| | - Scott D. Taylor
- Department of Chemistry, University of Waterloo, 200 University
Avenue West, Waterloo, Ontario Canada, N2L 3G1
| |
Collapse
|
33
|
Mascarin A, Valverde IE, Mindt TL. Radiolabeled analogs of neurotensin (8–13) containing multiple 1,2,3-triazoles as stable amide bond mimics in the backbone. MEDCHEMCOMM 2016. [DOI: 10.1039/c6md00208k] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Substitution of multiple amide bonds by metabolically stable 1,2,3-triazoles yields novel tumour-targeting neurotensin-based peptidomimetics with interesting biological properties.
Collapse
Affiliation(s)
- Alba Mascarin
- Division of Radiopharmaceutical Chemistry
- University of Basel Hospital
- CH-4031 Basel
- Switzerland
| | - Ibai E. Valverde
- Division of Radiopharmaceutical Chemistry
- University of Basel Hospital
- CH-4031 Basel
- Switzerland
| | - Thomas L. Mindt
- Division of Radiopharmaceutical Chemistry
- University of Basel Hospital
- CH-4031 Basel
- Switzerland
- Ludwig Boltzmann Institute for Applied Diagnostics
| |
Collapse
|
34
|
Synthesis and anticancer evaluation of complex unsaturated isosteviol-derived triazole conjugates. Future Med Chem 2015; 7:2419-28. [PMID: 26653151 DOI: 10.4155/fmc.15.158] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023] Open
Abstract
BACKGROUND For the last two decades, diterpenoid isosteviol and its derivatives have gained significant attention for novel chemical transformation in the drug discovery field. RESULTS An efficient way towards the synthesis of structurally diverse isosteviol derivatives was described here employing unsaturated functionalities as attractive templates for further transformation such as epoxidation. These structurally diverse compounds exhibited promising cytotoxic activities on different types of cancer cell lines, leading to drug discovery derived from natural products for the treatment of cancer. CONCLUSION In this work, novel isosteviol derivatives with Michael acceptors were synthesized to expand the diversity and complexity of a class of isosteviol-derived triazole conjugates to facilitate the development of potential antitumor agents.
Collapse
|
35
|
Valverde IE, Vomstein S, Fischer CA, Mascarin A, Mindt TL. Probing the Backbone Function of Tumor Targeting Peptides by an Amide-to-Triazole Substitution Strategy. J Med Chem 2015; 58:7475-84. [DOI: 10.1021/acs.jmedchem.5b00994] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Ibai E. Valverde
- Division
of Radiopharmaceutical Chemistry, University of Basel Hospital, Petersgraben
4, 4031 Basel, Switzerland
| | - Sandra Vomstein
- Division
of Radiopharmaceutical Chemistry, University of Basel Hospital, Petersgraben
4, 4031 Basel, Switzerland
| | - Christiane A. Fischer
- Division
of Radiopharmaceutical Chemistry, University of Basel Hospital, Petersgraben
4, 4031 Basel, Switzerland
| | - Alba Mascarin
- Division
of Radiopharmaceutical Chemistry, University of Basel Hospital, Petersgraben
4, 4031 Basel, Switzerland
| | - Thomas L. Mindt
- Division
of Radiopharmaceutical Chemistry, University of Basel Hospital, Petersgraben
4, 4031 Basel, Switzerland
| |
Collapse
|
36
|
Rjabovs V, Ostrovskis P, Posevins D, Kiseļovs G, Kumpiņš V, Mishnev A, Turks M. Synthesis of Building Blocks for Carbopeptoids and Their Triazole Isoster Assembly. European J Org Chem 2015. [DOI: 10.1002/ejoc.201500695] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
|
37
|
Sahariah P, Sørensen KK, Hjálmarsdóttir MÁ, Sigurjónsson ÓE, Jensen KJ, Másson M, Thygesen MB. Antimicrobial peptide shows enhanced activity and reduced toxicity upon grafting to chitosan polymers. Chem Commun (Camb) 2015; 51:11611-4. [PMID: 26096124 DOI: 10.1039/c5cc04010h] [Citation(s) in RCA: 74] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Here we report that grafting of a short antimicrobial peptide, anoplin, to chitosan polymers is a strategy for abolishing the hemolytic propensity, and at the same time increasing the activity of the parent peptide. Anoplin-chitosan conjugates were synthesized by CuAAC reaction of multiple peptides through 2-azidoacetyl groups on chitosan.
Collapse
Affiliation(s)
- Priyanka Sahariah
- Faculty of Pharmaceutical Sciences, School of Health Sciences, University of Iceland, Hofsvallagata 53, IS-107 Reykjavík, Iceland
| | | | | | | | | | | | | |
Collapse
|
38
|
Galibert M, Piller V, Piller F, Aucagne V, Delmas AF. Combining triazole ligation and enzymatic glycosylation on solid phase simplifies the synthesis of very long glycoprotein analogues. Chem Sci 2015; 6:3617-3623. [PMID: 30155000 PMCID: PMC6085731 DOI: 10.1039/c5sc00773a] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2015] [Accepted: 04/12/2015] [Indexed: 01/01/2023] Open
Abstract
The solid-phase chemical assembly of a protein through iterative chemoselective ligation of unprotected peptide segments can be followed with chemical and/or enzymatic transformations of the resulting immobilized protein, the latter steps thus benefitting from the advantages provided by the solid support. We demonstrate here the usefulness of this strategy for the chemo-enzymatic synthesis of glycoprotein analogues. A linker was specifically designed for application to the synthesis of O-glycoproteins: this new linker is readily cleaved under mild aqueous conditions compatible with very sensitive glycosidic bonds, but is remarkably stable under a wide range of chemical and biochemical conditions. It was utilized for solid-supported N-to-C peptidomimetic triazole ligation followed by enzymatic glycosylation, ultimately leading to a very large MUC1-derived glycoprotein containing 160 amino acid residues, 24 α-GalNAc moieties linked to Ser and Thr, and 3 triazoles as peptide bond mimetics.
Collapse
Affiliation(s)
- Mathieu Galibert
- Centre de Biophysique Moléculaire , CNRS UPR 4301 , Rue Charles Sadron , 45071 Orléans Cedex 2 , France .
| | - Véronique Piller
- Centre de Biophysique Moléculaire , CNRS UPR 4301 , Rue Charles Sadron , 45071 Orléans Cedex 2 , France .
| | - Friedrich Piller
- Centre de Biophysique Moléculaire , CNRS UPR 4301 , Rue Charles Sadron , 45071 Orléans Cedex 2 , France .
| | - Vincent Aucagne
- Centre de Biophysique Moléculaire , CNRS UPR 4301 , Rue Charles Sadron , 45071 Orléans Cedex 2 , France .
| | - Agnès F Delmas
- Centre de Biophysique Moléculaire , CNRS UPR 4301 , Rue Charles Sadron , 45071 Orléans Cedex 2 , France .
| |
Collapse
|
39
|
Lengyel GA, Reinert ZE, Griffith BD, Horne WS. Comparison of backbone modification in protein β-sheets by α→γ residue replacement and α-residue methylation. Org Biomol Chem 2015; 12:5375-81. [PMID: 24909436 DOI: 10.1039/c4ob00886c] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
The mimicry of protein tertiary structure by oligomers with unnatural backbones is a significant contemporary research challenge. Among common elements of secondary structure found in natural proteins, sheets have proven the most difficult to address. Here, we report the systematic comparison of different strategies for peptide backbone modification in β-sheets with the goal of identifying the best method for replacing a multi-stranded sheet in a protein tertiary fold. The most effective sheet modifications examined led to native-like tertiary folding behavior with a thermodynamic folded stability comparable to the prototype protein on which the modified backbones are based.
Collapse
Affiliation(s)
- George A Lengyel
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, USA.
| | | | | | | |
Collapse
|
40
|
Beltramo M, Robert V, Galibert M, Madinier JB, Marceau P, Dardente H, Decourt C, De Roux N, Lomet D, Delmas AF, Caraty A, Aucagne V. Rational design of triazololipopeptides analogs of kisspeptin inducing a long-lasting increase of gonadotropins. J Med Chem 2015; 58:3459-70. [PMID: 25811530 DOI: 10.1021/jm5019675] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
New potent and selective KISS1R agonists were designed using a combination of rational chemical modifications of the endogenous neuropeptide kisspeptin 10 (KP10). Improved resistance to degradation and presumably reduced renal clearance were obtained by introducing a 1,4-disubstituted 1,2,3-triazole as a proteolysis-resistant amide mimic and a serum albumin-binding motif, respectively. These triazololipopeptides are highly potent full agonists of KISS1R and are >100 selective over the closely related NPFF1R. When injected in ewes with a quiescent reproductive system, the best compound of our series induced a much prolonged increase of luteinizing hormone release compared to KP10 and increased follicle-stimulating hormone plasma concentration. Hence, this KISS1R agonist is a new valuable pharmacological tool to explore the potential of KP system in reproduction control. Furthermore, it represents the first step to develop drugs treating reproductive system disorders due to a reduced activity of the hypothalamo-pituitary-gonadal axis such as delayed puberty, hypothalamic amenorrhea, and hypogonadotropic hypogonadism.
Collapse
Affiliation(s)
- Massimiliano Beltramo
- †UMR Physiologie de la Reproduction et des Comportements (INRA, UMR85; CNRS, UMR7247; Université François Rabelais Tours; IFCE), F-37380 Nouzilly, France
| | - Vincent Robert
- †UMR Physiologie de la Reproduction et des Comportements (INRA, UMR85; CNRS, UMR7247; Université François Rabelais Tours; IFCE), F-37380 Nouzilly, France
| | - Mathieu Galibert
- ‡Centre de Biophysique Moléculaire (CNRS UPR4301), Rue Charles Sadron, F-45071 Orléans Cedex 2, France
| | - Jean-Baptiste Madinier
- ‡Centre de Biophysique Moléculaire (CNRS UPR4301), Rue Charles Sadron, F-45071 Orléans Cedex 2, France
| | - Philippe Marceau
- ‡Centre de Biophysique Moléculaire (CNRS UPR4301), Rue Charles Sadron, F-45071 Orléans Cedex 2, France
| | - Hugues Dardente
- †UMR Physiologie de la Reproduction et des Comportements (INRA, UMR85; CNRS, UMR7247; Université François Rabelais Tours; IFCE), F-37380 Nouzilly, France
| | - Caroline Decourt
- †UMR Physiologie de la Reproduction et des Comportements (INRA, UMR85; CNRS, UMR7247; Université François Rabelais Tours; IFCE), F-37380 Nouzilly, France
| | | | - Didier Lomet
- †UMR Physiologie de la Reproduction et des Comportements (INRA, UMR85; CNRS, UMR7247; Université François Rabelais Tours; IFCE), F-37380 Nouzilly, France
| | - Agnès F Delmas
- ‡Centre de Biophysique Moléculaire (CNRS UPR4301), Rue Charles Sadron, F-45071 Orléans Cedex 2, France
| | - Alain Caraty
- †UMR Physiologie de la Reproduction et des Comportements (INRA, UMR85; CNRS, UMR7247; Université François Rabelais Tours; IFCE), F-37380 Nouzilly, France
| | - Vincent Aucagne
- ‡Centre de Biophysique Moléculaire (CNRS UPR4301), Rue Charles Sadron, F-45071 Orléans Cedex 2, France
| |
Collapse
|
41
|
Lohani CR, Taylor R, Palmer M, Taylor SD. Solid-Phase Total Synthesis of Daptomycin and Analogs. Org Lett 2015; 17:748-51. [PMID: 25634084 DOI: 10.1021/acs.orglett.5b00043] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Chuda Raj Lohani
- Department
of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada, N2L 3G1
| | - Robert Taylor
- Department
of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada, N2L 3G1
| | - Michael Palmer
- Department
of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada, N2L 3G1
| | - Scott D. Taylor
- Department
of Chemistry, University of Waterloo, 200 University Avenue West, Waterloo, Ontario, Canada, N2L 3G1
| |
Collapse
|
42
|
Reinert ZE, Horne WS. Protein backbone engineering as a strategy to advance foldamers toward the frontier of protein-like tertiary structure. Org Biomol Chem 2014; 12:8796-802. [PMID: 25285575 PMCID: PMC4211622 DOI: 10.1039/c4ob01769b] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
A variety of non-biological structural motifs have been incorporated into the backbone of natural protein sequences. In parallel work, diverse unnatural oligomers of de novo design (termed "foldamers") have been developed that fold in defined ways. In this Perspective article, we survey foundational studies on protein backbone engineering, with a focus on alterations made in the context of complex tertiary folds. We go on to summarize recent work illustrating the potential promise of these methods to provide a general framework for the construction of foldamer mimics of protein tertiary structures.
Collapse
Affiliation(s)
- Zachary E Reinert
- Department of Chemistry, University of Pittsburgh, Pittsburgh, PA 15260, USA.
| | | |
Collapse
|
43
|
Khaybullin RN, Zhang M, Fu J, Liang X, Li T, Katritzky AR, Okunieff P, Qi X. Design and synthesis of isosteviol triazole conjugates for cancer therapy. Molecules 2014; 19:18676-89. [PMID: 25405286 PMCID: PMC5753759 DOI: 10.3390/molecules191118676] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2014] [Revised: 11/06/2014] [Accepted: 11/06/2014] [Indexed: 01/26/2023] Open
Abstract
One of the keys for successfully developing drugs against the broad spectrum of cancer cell types is structural diversity. In the current study, we focused on a family of isosteviol derivatives as potential novel antitumor agents. Isosteviol is a tetracyclic diterpenoid obtained by acid hydrolysis of steviol glycoside extracts isolated from abundant Stevia rebaudiana plants. In this work, we have designed and synthesized a panel of isosteviol triazole conjugates using "click" chemistry methodology. Evaluation of these compounds against a series of cancer cell lines derived from primary and metastatic tumors demonstrated that these conjugates exhibit cytotoxic activities with IC50 in the low μM range. In addition, their anti-proliferative activities are cancer cell type specific. Taken together, our studies underscore the importance of structural diversity in achieving cancer cell type specific drug development.
Collapse
Affiliation(s)
- Ravil N Khaybullin
- Department of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, USA
| | - Mei Zhang
- Department of Radiation Oncology, College of Medicine, University of Florida Health Cancer Center, Gainesville, FL 32610, USA
| | - Junjie Fu
- Department of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, USA
| | - Xiao Liang
- Department of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, USA
| | - Tammy Li
- Department of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, USA
| | - Alan R Katritzky
- Center for Heterocyclic Compounds, Department of Chemistry, University of Florida, Gainesville, FL 32611, USA
| | - Paul Okunieff
- Department of Radiation Oncology, College of Medicine, University of Florida Health Cancer Center, Gainesville, FL 32610, USA
| | - Xin Qi
- Department of Medicinal Chemistry, College of Pharmacy, University of Florida, Gainesville, FL 32610, USA.
| |
Collapse
|
44
|
Hill TA, Shepherd NE, Diness F, Fairlie DP. Constraining cyclic peptides to mimic protein structure motifs. Angew Chem Int Ed Engl 2014; 53:13020-41. [PMID: 25287434 DOI: 10.1002/anie.201401058] [Citation(s) in RCA: 306] [Impact Index Per Article: 30.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Revised: 04/02/2013] [Indexed: 12/18/2022]
Abstract
Many proteins exert their biological activities through small exposed surface regions called epitopes that are folded peptides of well-defined three-dimensional structures. Short synthetic peptide sequences corresponding to these bioactive protein surfaces do not form thermodynamically stable protein-like structures in water. However, short peptides can be induced to fold into protein-like bioactive conformations (strands, helices, turns) by cyclization, in conjunction with the use of other molecular constraints, that helps to fine-tune three-dimensional structure. Such constrained cyclic peptides can have protein-like biological activities and potencies, enabling their uses as biological probes and leads to therapeutics, diagnostics and vaccines. This Review highlights examples of cyclic peptides that mimic three-dimensional structures of strand, turn or helical segments of peptides and proteins, and identifies some additional restraints incorporated into natural product cyclic peptides and synthetic macrocyclic peptidomimetics that refine peptide structure and confer biological properties.
Collapse
Affiliation(s)
- Timothy A Hill
- Division of Chemistry and Structural Biology, Institute for Molecular Bioscience, The University of Queensland, Brisbane, Queensland 4072 (Australia)
| | | | | | | |
Collapse
|
45
|
Hill TA, Shepherd NE, Diness F, Fairlie DP. Fixierung cyclischer Peptide: Mimetika von Proteinstrukturmotiven. Angew Chem Int Ed Engl 2014. [DOI: 10.1002/ange.201401058] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
|
46
|
Harmand TJR, Murar CE, Bode JW. New chemistries for chemoselective peptide ligations and the total synthesis of proteins. Curr Opin Chem Biol 2014; 22:115-21. [DOI: 10.1016/j.cbpa.2014.09.032] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2014] [Revised: 09/22/2014] [Accepted: 09/23/2014] [Indexed: 01/10/2023]
|
47
|
Semi-synthesis of biologically active nisin hybrids composed of the native lanthionine ABC-fragment and a cross-stapled synthetic DE-fragment. Bioorg Med Chem 2014; 22:5345-53. [DOI: 10.1016/j.bmc.2014.07.046] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2014] [Revised: 07/24/2014] [Accepted: 07/28/2014] [Indexed: 01/23/2023]
|
48
|
A bombesin-shepherdin radioconjugate designed for combined extra- and intracellular targeting. Pharmaceuticals (Basel) 2014; 7:662-75. [PMID: 24871806 PMCID: PMC4078514 DOI: 10.3390/ph7060662] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2014] [Revised: 05/17/2014] [Accepted: 05/20/2014] [Indexed: 12/28/2022] Open
Abstract
Radiolabeled peptides which target tumor-specific membrane structures of cancer cells represent a promising class of targeted radiopharmaceuticals for the diagnosis and therapy of cancer. A potential drawback of a number of reported radiopeptides is the rapid washout of a substantial fraction of the initially delivered radioactivity from cancer cells and tumors. This renders the initial targeting effort in part futile and results in a lower imaging quality and efficacy of the radiotracer than achievable. We are investigating the combination of internalizing radiopeptides with molecular entities specific for an intracellular target. By enabling intracellular interactions of the radioconjugate, we aim at reducing/decelerating the externalization of radioactivity from cancer cells. Using the “click-to-chelate” approach, the 99mTc-tricarbonyl core as a reporter probe for single-photon emission computed tomography (SPECT) was combined with the binding sequence of bombesin for extracellular targeting of the gastrin-releasing peptide receptor (GRP-r) and peptidic inhibitors of the cytosolic heat shock 90 protein (Hsp90) for intracellular targeting. Receptor-specific uptake of the multifunctional radioconjugate could be confirmed, however, the cellular washout of radioactivity was not improved. We assume that either endosomal trapping or lysosomal degradation of the radioconjugate is accountable for these observations.
Collapse
|
49
|
Arumugam S, Popik VV. Sequential "click" - "photo-click" cross-linker for catalyst-free ligation of azide-tagged substrates. J Org Chem 2014; 79:2702-8. [PMID: 24548078 PMCID: PMC3985855 DOI: 10.1021/jo500143v] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Indexed: 02/07/2023]
Abstract
Heterobifunctional linker allows for selective catalyst-free ligation of two different azide-tagged substrates via strained-promoted azide-alkyne cycloaddition (SPAAC). The linker contains an azadibenzocyclooctyne (ADIBO) moiety on one end and a cyclopropenone-masked dibenzocyclooctyne (photo-DIBO) group on the other. The first azide-derivatized substrate reacts only at the ADIBO end of the linker as the photo-DIBO moiety is azide-inert. After the completion of the first SPAAC step, photo-DIBO is activated by brief exposure to 350 nm light from a fluorescent UV lamp. The unmasked DIBO group then reacts with the second azide-tagged substrate. Both click reactions are fast (k = 0.4 and 0.07 M(-1) s(-1), respectively) and produce quantitative yield of ligation in organic solvents or aqueous solutions. The utility of the new cross-linker has been demonstrated by conjugation of azide functionalized bovine serum albumin (azido-BSA) with azido-fluorescein and by the immobilization of the latter protein on azide-derivatized silica beads. The BSA-bead linker was designed to incorporate hydrolytically labile fragment, which permits release of protein under the action of dilute acid. UV activation of the second click reaction permits spatiotemporal control of the ligation process.
Collapse
Affiliation(s)
- Selvanathan Arumugam
- Department of Chemistry, University of
Georgia, Athens, Georgia 30602, United
States
| | - Vladimir V. Popik
- Department of Chemistry, University of
Georgia, Athens, Georgia 30602, United
States
| |
Collapse
|
50
|
Fernandes AE, Jonas AM, Riant O. Application of CuAAC for the covalent immobilization of homogeneous catalysts. Tetrahedron 2014. [DOI: 10.1016/j.tet.2013.12.034] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
|