1
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Wang H, Kocheril PA, Yang Z, Lee D, Naji N, Du J, Lin LE, Wei L. Room-Temperature Single-Molecule Infrared Imaging and Spectroscopy through Bond-Selective Fluorescence. Angew Chem Int Ed Engl 2024; 63:e202413647. [PMID: 39312677 DOI: 10.1002/anie.202413647] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 09/19/2024] [Accepted: 09/23/2024] [Indexed: 09/25/2024]
Abstract
Infrared (IR) spectroscopy stands as a workhorse for exploring bond vibrations, offering a wealth of chemical insights across diverse frontiers. With increasing focus on the regime of single molecules, obtaining IR-sensitive information from individual molecules at room temperature would provide essential information about unknown molecular properties. Here, we leverage bond-selective fluorescence microscopy, facilitated by narrowband picosecond mid-IR and near-IR double-resonance excitation, for high-throughput mid-IR structural probing of single molecules. We robustly capture single-molecule images and analyze the combined polarization dependence, vibrational peaks, linewidths, and lifetimes of probe molecules with representative scaffolds. From bulk to single molecules, we find that vibrational lifetimes remain consistent, while linewidths are narrowed by approximately twofold and anisotropy becomes more pronounced. Additionally, unexpected peak shifts from single molecules were observed, attributed to the generation of new modes due to previously unexplored dimerization, supported by quantum chemistry calculations. These findings underscore the importance of infrared analysis on individual single molecules in ambient environments, offering molecular information crucial for functional imaging and the investigation of the fundamental properties and utilities of luminescent molecules.
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Affiliation(s)
- Haomin Wang
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
| | - Philip A Kocheril
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
| | - Ziguang Yang
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
| | - Dongkwan Lee
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
| | - Noor Naji
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
| | - Jiajun Du
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
| | - Li-En Lin
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
| | - Lu Wei
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 91125, Pasadena, California, USA
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2
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Loe CM, Chatterjee S, Weakly RB, Khalil M. Observing vibronic coupling in a strongly hydrogen bonded system with coherent multidimensional vibrational-electronic spectroscopy. J Chem Phys 2024; 161:174203. [PMID: 39494798 DOI: 10.1063/5.0226236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2024] [Accepted: 10/20/2024] [Indexed: 11/05/2024] Open
Abstract
The coupled structural and electronic parameters of intramolecular hydrogen bonding play an important role in ultrafast chemical reactions, such as proton transfer processes. We perform one- and two-dimensional vibrational-electronic (1D and 2D VE) spectroscopy experiments to understand the couplings between vibrational and electronic coordinates in 10-Hydroxybenzo[h]quinoline, an ultrafast proton transfer system. The experiments reveal that the OH stretch (νOH) is strongly coupled to the electronic excitation, and Fourier analysis of the 1D data shows coherent oscillations from the low frequency backbone vibrational modes coupled to the νOH mode, resulting in an electronically detected vibronic signal. In-plane low-frequency vibrations at 242 and 386 cm-1 change the hydrogen bond distance and modulate the observed electronic signal in the polarization-selective 1D VE experiment through orientation-dependent coupling with the νOH mode. Resolution of the excitation frequency axis with 2D VE experiments reveals that excitation frequency, detection frequency, and experimental delay affect the frequency and strength of the vibronic transitions observed. Our results demonstrate evidence of direct coupling of the high frequency νOH mode with the S1 ← S0 electronic transition in 10-Hydroxybenzo[h]quinoline (HBQ), and orientation-dependent couplings of the low-frequency 242 and 386 cm-1 modes to the νOH mode and the electronic transition. This demonstration of multidimensional VE spectroscopy on HBQ reveals the potential of using 1D and 2D VE spectroscopy to develop a quantitative understanding of the role of vibronic coupling in hydrogen bonding and ultrafast proton transfer for complex systems.
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Affiliation(s)
- Caroline M Loe
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Srijan Chatterjee
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Robert B Weakly
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - Munira Khalil
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
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3
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Guan J, Li X, Shen C, Zi Z, Hou Z, Hao C, Yu Q, Jiang H, Ma Y, Yu Z, Zheng J. Vibrational-Mode-Selective Modulation of Electronic Excitation. Chemphyschem 2024; 25:e202400335. [PMID: 38807346 DOI: 10.1002/cphc.202400335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 05/27/2024] [Accepted: 05/28/2024] [Indexed: 05/30/2024]
Abstract
Vibrational-mode-selective modulation of electronic excitation is conducted with a synchronized femtosecond (fs) visible (vis) pulse and a picosecond (ps) infrared (IR) pulse. The mechanism of modulation of vibrational and vibronic relaxation behavior of excited state is investigated with ultrafast vis/IR, IR/IR, and vis-IR/IR transient spectroscopy, optical gating experiments and theoretical calculations. An organic molecule, 4'-(N,N-dimethylamino)-3-methoxyflavone (DMA3MHF) is chosen as the model system. Upon 1608 cm-1 excitation, the skeleton stretching vibration of DMA3MHF is energized, which can significantly change the shape of the absorption, facilitate the radiative decay and promote emission from vibrational excited states. As results, a remarkable enhancement and a slight blueshift in fluorescence are observed. The mode-selective modulation of electronic excitation is not limited in luminescence or photophysics. It is expected to be widely applicable in tuning many photochemical processes.
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Affiliation(s)
- Jianxin Guan
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Xinmao Li
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Chengzhen Shen
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Zhi Zi
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Zhuowei Hou
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Chuanqing Hao
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Qirui Yu
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Hong Jiang
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Yuguo Ma
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Zhihao Yu
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
| | - Junrong Zheng
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, Beijing, 100871, China
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4
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Yan C, Wang C, Wagner JC, Ren J, Lee C, Wan Y, Wang SE, Xiong W. Multidimensional Widefield Infrared-Encoded Spontaneous Emission Microscopy: Distinguishing Chromophores by Ultrashort Infrared Pulses. J Am Chem Soc 2024; 146:1874-1886. [PMID: 38085547 PMCID: PMC10811677 DOI: 10.1021/jacs.3c07251] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2023] [Revised: 11/30/2023] [Accepted: 11/30/2023] [Indexed: 01/25/2024]
Abstract
Photoluminescence (PL) imaging has broad applications in visualizing biological activities, detecting chemical species, and characterizing materials. However, the chemical information encoded in the PL images is often limited by the overlapping emission spectra of chromophores. Here, we report a PL microscopy based on the nonlinear interactions between mid-infrared and visible excitations on matters, which we termed MultiDimensional Widefield Infrared-encoded Spontaneous Emission (MD-WISE) microscopy. MD-WISE microscopy can distinguish chromophores that possess nearly identical emission spectra via conditions in a multidimensional space formed by three independent variables: the temporal delay between the infrared and the visible pulses (t), the wavelength of visible pulses (λvis), and the frequencies of the infrared pulses (ωIR). This method is enabled by two mechanisms: (1) modulating the optical absorption cross sections of molecular dyes by exciting specific vibrational functional groups and (2) reducing the PL quantum yield of semiconductor nanocrystals, which was achieved through strong field ionization of excitons. Importantly, MD-WISE microscopy operates under widefield imaging conditions with a field of view of tens of microns, other than the confocal configuration adopted by most nonlinear optical microscopies, which require focusing the optical beams tightly. By demonstrating the capacity of registering multidimensional information into PL images, MD-WISE microscopy has the potential of expanding the number of species and processes that can be simultaneously tracked in high-speed widefield imaging applications.
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Affiliation(s)
- Chang Yan
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
- Center
for Ultrafast Science and Technology, School of Chemistry and Chemical
Engineering, Shanghai Jiao Tong University, Shanghai 200240, China
- Zhangjiang
Institute for Advanced Study, Shanghai Jiao
Tong University, Shanghai 200240, China
| | - Chenglai Wang
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
| | - Jackson C. Wagner
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
| | - Jianyu Ren
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
| | - Carlynda Lee
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
| | - Yuhao Wan
- Department
of Pathology, University of California San
Diego, La Jolla, California 92093, United States
| | - Shizhen E. Wang
- Department
of Pathology, University of California San
Diego, La Jolla, California 92093, United States
| | - Wei Xiong
- Department
of Chemistry and Biochemistry, University
of California San Diego, La Jolla, California 92093, United States
- Materials
Science and Engineering Program, University
of California San Diego, La Jolla, California 92093, United States
- Department
of Electrical and Computer Engineering, University of California San Diego, La Jolla, California 92093, United States
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5
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Gallop NP, Maslennikov DR, Mondal N, Goetz KP, Dai Z, Schankler AM, Sung W, Nihonyanagi S, Tahara T, Bodnarchuk MI, Kovalenko MV, Vaynzof Y, Rappe AM, Bakulin AA. Ultrafast vibrational control of organohalide perovskite optoelectronic devices using vibrationally promoted electronic resonance. NATURE MATERIALS 2024; 23:88-94. [PMID: 37985838 PMCID: PMC10769873 DOI: 10.1038/s41563-023-01723-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 10/12/2023] [Indexed: 11/22/2023]
Abstract
Vibrational control (VC) of photochemistry through the optical stimulation of structural dynamics is a nascent concept only recently demonstrated for model molecules in solution. Extending VC to state-of-the-art materials may lead to new applications and improved performance for optoelectronic devices. Metal halide perovskites are promising targets for VC due to their mechanical softness and the rich array of vibrational motions of both their inorganic and organic sublattices. Here, we demonstrate the ultrafast VC of FAPbBr3 perovskite solar cells via intramolecular vibrations of the formamidinium cation using spectroscopic techniques based on vibrationally promoted electronic resonance. The observed short (~300 fs) time window of VC highlights the fast dynamics of coupling between the cation and inorganic sublattice. First-principles modelling reveals that this coupling is mediated by hydrogen bonds that modulate both lead halide lattice and electronic states. Cation dynamics modulating this coupling may suppress non-radiative recombination in perovskites, leading to photovoltaics with reduced voltage losses.
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Affiliation(s)
- Nathaniel P Gallop
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, London, UK
| | - Dmitry R Maslennikov
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, London, UK
| | - Navendu Mondal
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, London, UK
| | - Katelyn P Goetz
- Chair for Emerging Electronic Technologies, Technical University of Dresden, Dresden, Germany
| | - Zhenbang Dai
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA
| | - Aaron M Schankler
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA
| | - Woongmo Sung
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Saitama, Japan
| | - Satoshi Nihonyanagi
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Saitama, Japan
- RIKEN Center for Advanced Photonics (RAP), RIKEN, Wako, Saitama, Japan
| | - Tahei Tahara
- Molecular Spectroscopy Laboratory, RIKEN, Wako, Saitama, Japan
- RIKEN Center for Advanced Photonics (RAP), RIKEN, Wako, Saitama, Japan
| | - Maryna I Bodnarchuk
- Institute of Inorganic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Zürich, Switzerland
- Laboratory for Thin Films and Photovoltaics, Empa, Swiss Federal Laboratories for Materials Science and Technology, Dübendorf, Switzerland
| | - Maksym V Kovalenko
- Institute of Inorganic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zürich, Zürich, Switzerland
- Laboratory for Thin Films and Photovoltaics, Empa, Swiss Federal Laboratories for Materials Science and Technology, Dübendorf, Switzerland
| | - Yana Vaynzof
- Chair for Emerging Electronic Technologies, Technical University of Dresden, Dresden, Germany
- Leibniz Institute for Solid State and Materials Research Dresden, Dresden, Germany
| | - Andrew M Rappe
- Department of Chemistry, University of Pennsylvania, Philadelphia, PA, USA
| | - Artem A Bakulin
- Department of Chemistry and Centre for Processable Electronics, Imperial College London, London, UK.
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6
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Whaley-Mayda L, Guha A, Tokmakoff A. Multimode vibrational dynamics and orientational effects in fluorescence-encoded infrared spectroscopy. I. Response function theory. J Chem Phys 2023; 159:194201. [PMID: 37966137 DOI: 10.1063/5.0171939] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/11/2023] [Accepted: 10/19/2023] [Indexed: 11/16/2023] Open
Abstract
Fluorescence-encoded infrared (FEIR) spectroscopy is an emerging technique for performing vibrational spectroscopy in solution with detection sensitivity down to single molecules. FEIR experiments use ultrashort pulses to excite a fluorescent molecule's vibrational and electronic transitions in a sequential, time-resolved manner, and are therefore sensitive to intervening vibrational dynamics on the ground state, vibronic coupling, and the relative orientation of vibrational and electronic transition dipole moments. This series of papers presents a theoretical treatment of FEIR spectroscopy that describes these phenomena and examines their manifestation in experimental data. This first paper develops a nonlinear response function description of Fourier-transform FEIR experiments for a two-level electronic system coupled to multiple vibrations, which is then applied to interpret experimental measurements in the second paper [L. Whaley-Mayda et al., J. Chem. Phys. 159, 194202 (2023)]. Vibrational coherence between pairs of modes produce oscillatory features that interfere with the vibrations' population response in a manner dependent on the relative signs of their respective Franck-Condon wavefunction overlaps, leading to time-dependent distortions in FEIR spectra. The orientational response of population and coherence contributions are analyzed and the ability of polarization-dependent experiments to extract relative transition dipole angles is discussed. Overall, this work presents a framework for understanding the full spectroscopic information content of FEIR measurements to aid data interpretation and inform optimal experimental design.
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Affiliation(s)
- Lukas Whaley-Mayda
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Abhirup Guha
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
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7
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van Wilderen LJGW, Kern-Michler D, Neumann C, Reinfelds M, von Cosel J, Horz M, Burghardt I, Heckel A, Bredenbeck J. Choose your leaving group: selective photodeprotection in a mixture of pHP-caged compounds by VIPER excitation. Chem Sci 2023; 14:2624-2630. [PMID: 36908963 PMCID: PMC9993852 DOI: 10.1039/d2sc06259c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2022] [Accepted: 02/07/2023] [Indexed: 02/11/2023] Open
Abstract
Photocages are light-triggerable molecular moieties that can locally release a pre-determined leaving group (LG). Finding a suitable photocage for a particular application may be challenging, as the choice may be limited by for instance the optical or physicochemical properties of the system. Using more than one photocage to release different LGs in a reaction mixture may even be more difficult. In this work an experimental strategy is presented that allows us to hand-pick the release of different LGs, and to do so in any order. This is achieved by using isotopologue photocage-LG mixtures in combination with ultrafast VIbrationally Promoted Electronic Resonance (VIPER) excitation. The latter provides the required molecular selectivity simply by tuning the wavenumber of the used IR pulses to the resonance of a specific photocage isotopologue, as is demonstrated here for the para-hydroxyphenacyl (pHP) photocage. For spectroscopic convenience, we use isotopologues of the infrared (IR) spectroscopic marker -SCN as different LGs. Especially for applications where fast LG release is required, pHP is found to be an excellent candidate, as free LG formation is observed to occur with a 10 ps lifetime. The devised strategy may open up new complex uncaging applications, where multiple LGs can be formed locally on a short time scale and in any sequence.
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Affiliation(s)
- Luuk J G W van Wilderen
- Johann Wolfgang Goethe-University, Institute of Biophysics Max-von-Laue-Str. 1 60438 Frankfurt am Main Germany
| | - Daniela Kern-Michler
- Johann Wolfgang Goethe-University, Institute of Biophysics Max-von-Laue-Str. 1 60438 Frankfurt am Main Germany
| | - Carsten Neumann
- Johann Wolfgang Goethe-University, Institute of Biophysics Max-von-Laue-Str. 1 60438 Frankfurt am Main Germany
| | - Matiss Reinfelds
- Johann Wolfgang Goethe-University, Institute of Organic Chemistry and Chemical Biology Max-von-Laue-Str. 7 60438 Frankfurt am Main Germany
| | - Jan von Cosel
- Johann Wolfgang Goethe-University, Institute of Physical and Theoretical Chemistry Max-von-Laue-Str. 7 60438 Frankfurt am Main Germany
| | - Maximiliane Horz
- Johann Wolfgang Goethe-University, Institute of Physical and Theoretical Chemistry Max-von-Laue-Str. 7 60438 Frankfurt am Main Germany
| | - Irene Burghardt
- Johann Wolfgang Goethe-University, Institute of Physical and Theoretical Chemistry Max-von-Laue-Str. 7 60438 Frankfurt am Main Germany
| | - Alexander Heckel
- Johann Wolfgang Goethe-University, Institute of Organic Chemistry and Chemical Biology Max-von-Laue-Str. 7 60438 Frankfurt am Main Germany
| | - Jens Bredenbeck
- Johann Wolfgang Goethe-University, Institute of Biophysics Max-von-Laue-Str. 1 60438 Frankfurt am Main Germany
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8
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Horz M, Masood HMA, Brunst H, Cerezo J, Picconi D, Vormann H, Niraghatam MS, van Wilderen LJGW, Bredenbeck J, Santoro F, Burghardt I. Vibrationally resolved two-photon electronic spectra including vibrational pre-excitation: Theory and application to VIPER spectroscopy with two-photon excitation. J Chem Phys 2023; 158:064201. [PMID: 36792506 DOI: 10.1063/5.0132608] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
Abstract
Following up on our previous work on vibrationally resolved electronic absorption spectra including the effect of vibrational pre-excitation [von Cosel et al., J. Chem. Phys. 147, 164116 (2017)], we present a combined theoretical and experimental study of two-photon-induced vibronic transitions in polyatomic molecules that are probed in the VIbrationally Promoted Electronic Resonance experiment using two-photon excitation (2P-VIPER). In order to compute vibronic spectra, we employ time-independent and time-dependent methods based on the evaluation of Franck-Condon overlap integrals and Fourier transformations of time-domain correlation functions, respectively. The time-independent approach uses a generalized version of the FCclasses method, while the time-dependent approach relies on the analytical evaluation of Gaussian moments within the harmonic approximation, including Duschinsky rotation effects. For the Coumarin 6 dye, two-dimensional 2P-VIPER experiments involving excitation to the lowest-lying singlet excited state (S1) are presented and compared with corresponding one-photon VIPER spectra. In both cases, coumarin ring modes and a CO stretch mode show VIPER activity, albeit with different relative intensities. Selective pre-excitation of these modes leads to a pronounced redshift of the low-frequency edge of the electronic absorption spectrum, which is a prerequisite for the VIPER experiment. Theoretical analysis underscores the role of interference between Franck-Condon and Herzberg-Teller effects in the two-photon experiment, which is at the root of the observed intensity distribution.
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Affiliation(s)
- Maximiliane Horz
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - Hafiz M A Masood
- Institute of Biophysics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438 Frankfurt, Germany
| | - Hendrik Brunst
- Institute of Biophysics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438 Frankfurt, Germany
| | - Javier Cerezo
- Departamento de Química and Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
| | - David Picconi
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - Hannah Vormann
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - Madhava Shyam Niraghatam
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - Luuk J G W van Wilderen
- Institute of Biophysics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438 Frankfurt, Germany
| | - Jens Bredenbeck
- Institute of Biophysics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438 Frankfurt, Germany
| | - Fabrizio Santoro
- Consiglio Nazionale delle Ricerche - CNR, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), SS di Pisa, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Irene Burghardt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
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9
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Cerezo J, Santoro F. FCclasses3: Vibrationally-resolved spectra simulated at the edge of the harmonic approximation. J Comput Chem 2023; 44:626-643. [PMID: 36380723 PMCID: PMC10100349 DOI: 10.1002/jcc.27027] [Citation(s) in RCA: 53] [Impact Index Per Article: 26.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2022] [Revised: 10/03/2022] [Accepted: 10/16/2022] [Indexed: 11/17/2022]
Abstract
We introduce FCclasses3, a code to carry out vibronic simulations of electronic spectra and nonradiative rates, based on the harmonic approximation. Key new features are: implementation of the full family of vertical and adiabatic harmonic models, vibrational analysis in curvilinear coordinates, extension to several electronic spectroscopies and implementation of time-dependent approaches. The use of curvilinear valence internal coordinates allows the adoption of quadratic model potential energy surfaces (PES) of the initial and final states expanded at arbitrary configurations. Moreover, the implementation of suitable projectors provides a robust framework for defining reduced-dimensionality models by sorting flexible coordinates out of the harmonic subset, so that they can then be treated at anharmonic level, or with mixed quantum classical approaches. A set of tools to facilitate input preparation and output analysis is also provided. We show the program at work in the simulation of different spectra (one and two-photon absorption, emission and resonance Raman) and internal conversion rate of a typical rigid molecule, anthracene. Then, we focus on absorption and emission spectra of a series of flexible polyphenyl molecules, highlighting the relevance of some of the newly implemented features. The code is freely available at http://www.iccom.cnr.it/en/fcclasses/.
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Affiliation(s)
- Javier Cerezo
- Departamento de Química and Institute for Advanced Research in Chemical Sciences (IAdChem)Universidad Autónoma de MadridMadridSpain
- Consiglio Nazionale delle RicercheIstituto di Chimica dei Composti Organo Metallici (ICCOM‐CNR)PisaItaly
| | - Fabrizio Santoro
- Consiglio Nazionale delle RicercheIstituto di Chimica dei Composti Organo Metallici (ICCOM‐CNR)PisaItaly
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10
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Whaley-Mayda L, Guha A, Tokmakoff A. Resonance conditions, detection quality, and single-molecule sensitivity in fluorescence-encoded infrared vibrational spectroscopy. J Chem Phys 2022; 156:174202. [DOI: 10.1063/5.0088435] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Fluorescence-encoded Infrared (FEIR) spectroscopy is a vibrational spectroscopy technique that has recently demonstrated the capability of single-molecule sensitivity in solution without near-field enhancement. This work explores the practical experimental factors that are required for successful FEIR measurements in both the single-molecule and bulk regimes. We investigate the role of resonance conditions by performing measurements on a series of coumarin fluorophores of varying electronic transition frequencies. To analyze variations in signal strength and signal to background between molecules, we introduce an FEIR brightness metric that normalizes out measurement-specific parameters. We find that the effect of the resonance condition on FEIR brightness can be reasonably well described by the electronic absorption spectrum. We discuss strategies for optimizing detection quality and sensitivity in bulk and single-molecule experiments.
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Affiliation(s)
| | - Abhirup Guha
- The University of Chicago, United States of America
| | - Andrei Tokmakoff
- Department of Chemistry, University of Chicago, United States of America
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11
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Smith LD, Dijkstra AG. Quantum dissipative systems beyond the standard harmonic model: Features of linear absorption and dynamics. J Chem Phys 2019; 151:164109. [PMID: 31675870 DOI: 10.1063/1.5122896] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Current simulations of ultraviolet-visible absorption lineshapes and dynamics of condensed phase systems largely adopt a harmonic description to model vibrations. Often, this involves a model of displaced harmonic oscillators that have the same curvature. Although convenient, for many realistic molecular systems, this approximation no longer suffices. We elucidate nonstandard harmonic and anharmonic effects on linear absorption and dynamics using a stochastic Schrödinger equation approach to account for the environment. First, a harmonic oscillator model with ground and excited potentials that differ in curvature is utilized. Using this model, it is shown that curvature difference gives rise to an additional substructure in the vibronic progression of absorption spectra. This effect is explained and subsequently quantified via a derived expression for the Franck-Condon coefficients. Subsequently, anharmonic features in dissipative systems are studied, using a Morse potential and parameters that correspond to the diatomic molecule H2 for differing displacements and environment interaction. Finally, using a model potential, the population dynamics and absorption spectra for the stiff-stilbene photoswitch are presented and features are explained by a combination of curvature difference and anharmonicity in the form of potential energy barriers on the excited potential.
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Affiliation(s)
- Luke D Smith
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
| | - Arend G Dijkstra
- School of Chemistry, University of Leeds, Leeds LS2 9JT, United Kingdom
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12
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Venkatraman RK, Orr-Ewing AJ. Photochemistry of Benzophenone in Solution: A Tale of Two Different Solvent Environments. J Am Chem Soc 2019; 141:15222-15229. [DOI: 10.1021/jacs.9b07047] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Ravi Kumar Venkatraman
- School of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, United Kingdom
| | - Andrew J. Orr-Ewing
- School of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, United Kingdom
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13
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Whaley-Mayda L, Penwell SB, Tokmakoff A. Fluorescence-Encoded Infrared Spectroscopy: Ultrafast Vibrational Spectroscopy on Small Ensembles of Molecules in Solution. J Phys Chem Lett 2019; 10:1967-1972. [PMID: 30942587 DOI: 10.1021/acs.jpclett.9b00748] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Fluorescence-encoded infrared (FEIR) spectroscopy is an ultrafast technique that uses a visible pulse to up-convert information about IR-driven vibrations into a fluorescent electronic population. Here we present an updated experimental approach to FEIR that achieves high sensitivity through confocal microscopy, high repetition rate excitation, and single-photon counting. We demonstrate the sensitivity of our experiment by measuring ultrafast vibrational transients and Fourier transform spectra of increasingly dilute solutions of a coumarin dye. We collect high-quality data at 40 μM (∼2 orders of magnitude below the limit for conventional IR) and make measurements down to the 10-100 nM range (∼5 orders of magnitude) before background signals become overwhelming. At 10 nM we measure the average number of molecules in the focal volume to be ∼20 using fluorescence correlation spectroscopy. This level of sensitivity opens up the possibility of performing fluctuation correlation vibrational spectroscopy or-with further improvement-single-molecule measurements.
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Affiliation(s)
- Lukas Whaley-Mayda
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Samuel B Penwell
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics , The University of Chicago , Chicago , Illinois 60637 , United States
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics , The University of Chicago , Chicago , Illinois 60637 , United States
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14
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Jansen TLC, Saito S, Jeon J, Cho M. Theory of coherent two-dimensional vibrational spectroscopy. J Chem Phys 2019; 150:100901. [DOI: 10.1063/1.5083966] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Thomas la Cour Jansen
- University of Groningen, Zernike Institute for Advanced Materials, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Shinji Saito
- Institute for Molecular Science, Myodaiji, Okazaki, Aichi 444-8585, Japan and The Graduate University for Advanced Studies, Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - Jonggu Jeon
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, South Korea
| | - Minhaeng Cho
- Center for Molecular Spectroscopy and Dynamics, Institute for Basic Science (IBS), Seoul 02841, South Korea
- Department of Chemistry, Korea University, Seoul 02841, South Korea
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15
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Nikitin K, O'Gara R. Mechanisms and Beyond: Elucidation of Fluxional Dynamics by Exchange NMR Spectroscopy. Chemistry 2019; 25:4551-4589. [PMID: 30421834 DOI: 10.1002/chem.201804123] [Citation(s) in RCA: 40] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2018] [Indexed: 12/31/2022]
Abstract
Detailed mechanistic information is crucial to our understanding of reaction pathways and selectivity. Dynamic exchange NMR techniques, in particular 2D exchange spectroscopy (EXSY) and its modifications, provide indispensable intricate information on the mechanisms of organic and inorganic reactions and other phenomena, for example, the dynamics of interfacial processes. In this Review, key results from exchange NMR studies of small molecules over the last few decades are systemised and discussed. After a brief introduction to the theory, the key types of dynamic processes are identified and fundamental examples given of intra- and intermolecular reactions, which, in turn, could involve, or not, bond-making and bond-breaking events. Following that logic, internal molecular rotation, intramolecular stereomutation and molecular recognition will first be considered because they do not typically involve bond breaking. Then, rearrangements, substitution-type reactions, cyclisations, additions and other processes affecting chemical bonds will be discussed. Finally, interfacial molecular dynamics and unexpected combinations of different types of fluxional processes will also be highlighted. How exchange NMR spectroscopy helps to identify conformational changes, coordination and molecular recognition processes as well as quantify reaction energy barriers and extract detailed mechanistic information by using reaction rate theory in conjunction with computational techniques will be shown.
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Affiliation(s)
- Kirill Nikitin
- School of Chemistry, University College Dublin, Belfield, Dublin, Ireland
| | - Ryan O'Gara
- School of Chemistry, University College Dublin, Belfield, Dublin, Ireland
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16
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Kern-Michler D, Neumann C, Mielke N, Luuk JGWVW, Reinfelds M, von Cosel J, Santoro F, Heckel A, Burghardt I, Bredenbeck J. Infrared pre-excitation grants isotopomer-specific photochemistry. EPJ WEB OF CONFERENCES 2019. [DOI: 10.1051/epjconf/201920503001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Species-selective photochemistry is often hampered by overlapping UV-Vis spectra. We overcome this long-standing problem by combined vibrational and electronic excitation as demonstrated by isotopomer selection. The influence of various factors on selectivity is discussed.
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17
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Zhang Y, Chen X, Zheng B, Guo X, Pan Y, Chen H, Li H, Min S, Guan C, Huang KW, Zheng J. Structural analysis of transient reaction intermediate in formic acid dehydrogenation catalysis using two-dimensional IR spectroscopy. Proc Natl Acad Sci U S A 2018; 115:12395-12400. [PMID: 30455307 PMCID: PMC6298111 DOI: 10.1073/pnas.1809342115] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
The molecular structure of a catalytically active key intermediate is determined in solution by employing 2D IR spectroscopy measuring vibrational cross-angles. The formate intermediate (2) in the formic acid dehydrogenation reaction catalyzed by a phosphorus-nitrogen PN3P-Ru catalyst is elucidated. Our spectroscopic studies show that the complex features a formate ion directly attached to the Ru center as a ligand, and a proton added to the imine arm of the dearomatized PN3P* ligand. During the catalytic process, the imine arms are not only reversibly protonated and deprotonated, but also interacting with the protic substrate molecules, effectively serving as the local proton buffer to offer remarkable stability with a turnover number (TON) over one million.
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Affiliation(s)
- Yufan Zhang
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, 100871 Beijing, China
- Department of Chemistry, Rice University, Houston, TX 77005
| | - Xin Chen
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, 100871 Beijing, China
| | - Bin Zheng
- King Abdullah University of Science and Technology Catalysis Center, King Abdullah University of Science and Technology, 23955-6900 Thuwal, Saudi Arabia
| | - Xunmin Guo
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, 100871 Beijing, China
- Department of Chemistry, Rice University, Houston, TX 77005
| | - Yupeng Pan
- King Abdullah University of Science and Technology Catalysis Center, King Abdullah University of Science and Technology, 23955-6900 Thuwal, Saudi Arabia
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology , 23955-6900 Thuwal, Saudi Arabia
| | - Hailong Chen
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, 100871 Beijing, China
- Department of Chemistry, Rice University, Houston, TX 77005
| | - Huaifeng Li
- King Abdullah University of Science and Technology Catalysis Center, King Abdullah University of Science and Technology, 23955-6900 Thuwal, Saudi Arabia
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology , 23955-6900 Thuwal, Saudi Arabia
| | - Shixiong Min
- King Abdullah University of Science and Technology Catalysis Center, King Abdullah University of Science and Technology, 23955-6900 Thuwal, Saudi Arabia
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology , 23955-6900 Thuwal, Saudi Arabia
| | - Chao Guan
- King Abdullah University of Science and Technology Catalysis Center, King Abdullah University of Science and Technology, 23955-6900 Thuwal, Saudi Arabia
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology , 23955-6900 Thuwal, Saudi Arabia
| | - Kuo-Wei Huang
- King Abdullah University of Science and Technology Catalysis Center, King Abdullah University of Science and Technology, 23955-6900 Thuwal, Saudi Arabia;
- Division of Physical Science and Engineering, King Abdullah University of Science and Technology , 23955-6900 Thuwal, Saudi Arabia
| | - Junrong Zheng
- College of Chemistry and Molecular Engineering, Beijing National Laboratory for Molecular Sciences, Peking University, 100871 Beijing, China;
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18
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Kern-Michler D, Neumann C, Mielke N, van Wilderen LJGW, Reinfelds M, von Cosel J, Santoro F, Heckel A, Burghardt I, Bredenbeck J. Controlling Photochemistry via Isotopomers and IR Pre-excitation. J Am Chem Soc 2018; 140:926-931. [PMID: 29182322 DOI: 10.1021/jacs.7b08723] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
It is a photochemist's dream to be able to photoinduce a reaction of a specific molecular species in an ensemble of similar but not identical ones. The problem is that similar molecules often exhibit nearly identical UV-Vis absorption spectra, making them difficult or impossible to distinguish or to select spectroscopically. The ultrafast VIPER (VIbrationally Promoted Electronic Resonance) pulse sequence allows to pick a single species for electronic excitation based on its infrared spectrum. The latter usually shows more features, allowing the discrimination between species than the UV-Vis spectrum. Here, we show that it is possible to induce and monitor species-selective photochemistry even for molecules with virtually identical UV-Vis spectra, which is the case for isotopomers. Next to isotope-selective photochemistry in solution, applications to orthogonal photo-uncaging and species-selective spectroscopy and photochemistry in mixtures are within reach.
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Affiliation(s)
- Daniela Kern-Michler
- Institute of Biophysics, Goethe University Frankfurt , Max-von-Laue-Str. 1, 60438 Frankfurt am Main, Germany
| | - Carsten Neumann
- Institute of Biophysics, Goethe University Frankfurt , Max-von-Laue-Str. 1, 60438 Frankfurt am Main, Germany
| | - Nicole Mielke
- Institute of Biophysics, Goethe University Frankfurt , Max-von-Laue-Str. 1, 60438 Frankfurt am Main, Germany
| | - Luuk J G W van Wilderen
- Institute of Biophysics, Goethe University Frankfurt , Max-von-Laue-Str. 1, 60438 Frankfurt am Main, Germany
| | - Matiss Reinfelds
- Institute of Organic Chemistry and Chemical Biology, Goethe University Frankfurt , Max-von-Laue-Str. 7, 60438 Frankfurt am Main, Germany
| | - Jan von Cosel
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt , Max-von-Laue Str. 7, 60438 Frankfurt am Main, Germany
| | - Fabrizio Santoro
- Consiglio Nazionale delle Ricerche (CNR), Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR) , UOS di Pisa, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Alexander Heckel
- Institute of Organic Chemistry and Chemical Biology, Goethe University Frankfurt , Max-von-Laue-Str. 7, 60438 Frankfurt am Main, Germany
| | - Irene Burghardt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt , Max-von-Laue Str. 7, 60438 Frankfurt am Main, Germany
| | - Jens Bredenbeck
- Institute of Biophysics, Goethe University Frankfurt , Max-von-Laue-Str. 1, 60438 Frankfurt am Main, Germany
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19
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Jansen TLC. Simple Quantum Dynamics with Thermalization. J Phys Chem A 2018; 122:172-183. [PMID: 29199829 PMCID: PMC5770886 DOI: 10.1021/acs.jpca.7b10380] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Revised: 12/04/2017] [Indexed: 02/05/2023]
Abstract
In this paper, we introduce two simple quantum dynamics methods. One is based on the popular surface-hopping method, and the other is based on rescaling of the propagation on the bath ground-state potential surface. The first method is special, as it avoids specific feedback from the simulated quantum system to the bath and can be applied for precalculated classical trajectories. It is based on the equipartition theorem to determine if hops between different potential energy surfaces are allowed. By comparing with the formally exact Hierarchical Equations Of Motion approach for four model systems we find that the method generally approximates the quantum dynamics toward thermal equilibrium very well. The second method is based on rescaling of the nonadiabatic coupling and also neglect the effect of the state of the quantum system on the bath. By the nature of the approximations, they cannot reproduce the effect of bath relaxation following excitation. However, the methods are both computationally more tractable than the conventional fewest switches surface hopping, and we foresee that the methods will be powerful for simulations of quantum dynamics in systems with complex bath dynamics, where the system-bath coupling is not too strong compared to the thermal energy.
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Affiliation(s)
- Thomas L. C. Jansen
- Zernike Institute for Advanced
Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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20
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Mastron JN, Tokmakoff A. Fourier Transform Fluorescence-Encoded Infrared Spectroscopy. J Phys Chem A 2018; 122:554-562. [DOI: 10.1021/acs.jpca.7b10305] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Affiliation(s)
- Joseph N. Mastron
- Department of Chemistry, The
James Franck Institute, and the Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, United States
| | - Andrei Tokmakoff
- Department of Chemistry, The
James Franck Institute, and the Institute for Biophysical Dynamics, University of Chicago, Chicago, Illinois 60637, United States
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21
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von Cosel J, Cerezo J, Kern-Michler D, Neumann C, van Wilderen LJGW, Bredenbeck J, Santoro F, Burghardt I. Vibrationally resolved electronic spectra including vibrational pre-excitation: Theory and application to VIPER spectroscopy. J Chem Phys 2017; 147:164116. [DOI: 10.1063/1.4999455] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
Affiliation(s)
- Jan von Cosel
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
| | - Javier Cerezo
- Departamento de Química Física, Universidad de Murcia, E-30071 Murcia, Spain
| | - Daniela Kern-Michler
- Institute of Biophysics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438 Frankfurt, Germany
| | - Carsten Neumann
- Institute of Biophysics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438 Frankfurt, Germany
| | | | - Jens Bredenbeck
- Institute of Biophysics, Goethe University Frankfurt, Max-von-Laue-Str. 1, 60438 Frankfurt, Germany
| | - Fabrizio Santoro
- Consiglio Nazionale delle Ricerche–CNR, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), UOS di Pisa, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Irene Burghardt
- Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Max-von-Laue-Str. 7, 60438 Frankfurt, Germany
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22
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Kraack JP. Ultrafast structural molecular dynamics investigated with 2D infrared spectroscopy methods. Top Curr Chem (Cham) 2017; 375:86. [PMID: 29071445 DOI: 10.1007/s41061-017-0172-1] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2017] [Accepted: 10/02/2017] [Indexed: 12/23/2022]
Abstract
Ultrafast, multi-dimensional infrared (IR) spectroscopy has been advanced in recent years to a versatile analytical tool with a broad range of applications to elucidate molecular structure on ultrafast timescales, and it can be used for samples in a many different environments. Following a short and general introduction on the benefits of 2D IR spectroscopy, the first part of this chapter contains a brief discussion on basic descriptions and conceptual considerations of 2D IR spectroscopy. Outstanding classical applications of 2D IR are used afterwards to highlight the strengths and basic applicability of the method. This includes the identification of vibrational coupling in molecules, characterization of spectral diffusion dynamics, chemical exchange of chemical bond formation and breaking, as well as dynamics of intra- and intermolecular energy transfer for molecules in bulk solution and thin films. In the second part, several important, recently developed variants and new applications of 2D IR spectroscopy are introduced. These methods focus on (i) applications to molecules under two- and three-dimensional confinement, (ii) the combination of 2D IR with electrochemistry, (iii) ultrafast 2D IR in conjunction with diffraction-limited microscopy, (iv) several variants of non-equilibrium 2D IR spectroscopy such as transient 2D IR and 3D IR, and (v) extensions of the pump and probe spectral regions for multi-dimensional vibrational spectroscopy towards mixed vibrational-electronic spectroscopies. In light of these examples, the important open scientific and conceptual questions with regard to intra- and intermolecular dynamics are highlighted. Such questions can be tackled with the existing arsenal of experimental variants of 2D IR spectroscopy to promote the understanding of fundamentally new aspects in chemistry, biology and materials science. The final part of the chapter introduces several concepts of currently performed technical developments, which aim at exploiting 2D IR spectroscopy as an analytical tool. Such developments embrace the combination of 2D IR spectroscopy and plasmonic spectroscopy for ultrasensitive analytics, merging 2D IR spectroscopy with ultra-high-resolution microscopy (nanoscopy), future variants of transient 2D IR methods, or 2D IR in conjunction with microfluidics. It is expected that these techniques will allow for groundbreaking research in many new areas of natural sciences.
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Affiliation(s)
- Jan Philip Kraack
- Department of Chemistry, University of Zürich, Winterthurerstrasse 190, 8057, Zurich, Switzerland.
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23
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Mastron JN, Tokmakoff A. Two-Photon-Excited Fluorescence-Encoded Infrared Spectroscopy. J Phys Chem A 2016; 120:9178-9187. [PMID: 27802385 DOI: 10.1021/acs.jpca.6b09158] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We report on a method for performing ultrafast infrared (IR) vibrational spectroscopy using fluorescence detection. Vibrational dynamics on the ground electronic state driven by femtosecond mid-infrared pulses are detected by changes in fluorescence amplitude resulting from modulation of a two-photon visible transition by nuclear motion. We examine a series of coumarin dyes and study the signals as a function of solvent and excitation pulse parameters. The measured signal characterizes the relaxation of vibrational populations and coherences but yields different information than conventional IR transient absorption measurements. These differences result from the manner in which the ground-state dynamics are projected by the two-photon detection step. Extensions of this method can be adapted for a variety of increased-sensitivity IR measurements.
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Affiliation(s)
- Joseph N Mastron
- Department of Chemistry, the James Franck Institute, and the Institute for Biophysical Dynamics University of Chicago , Chicago, Illinois 60637, United States
| | - Andrei Tokmakoff
- Department of Chemistry, the James Franck Institute, and the Institute for Biophysical Dynamics University of Chicago , Chicago, Illinois 60637, United States
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24
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Leger JD, Varner C, Rubtsov IV. Multi-mode heterodyned 5th-order infrared spectroscopy. J Chem Phys 2016; 145:154201. [DOI: 10.1063/1.4963815] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Joel D. Leger
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118, USA
| | - Clyde Varner
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118, USA
| | - Igor V. Rubtsov
- Department of Chemistry, Tulane University, New Orleans, Louisiana 70118, USA
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25
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Ge C, Shen Y, Deng GH, Tian Y, Yu D, Yang X, Yuan K, Zheng J. Negligible Isotopic Effect on Dissociation of Hydrogen Bonds. J Phys Chem B 2016; 120:3187-95. [DOI: 10.1021/acs.jpcb.5b12652] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chuanqi Ge
- School
of Physics and Electronic Technology, Liaoning Normal University, Dalian 116029, China
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of
the Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
| | - Yuneng Shen
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of
the Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
- University of the Chinese Academy of Sciences, Beijing 100049, China
| | - Gang-Hua Deng
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of
the Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
| | - Yuhuan Tian
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of
the Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
| | - Dongqi Yu
- School
of Physics and Electronic Technology, Liaoning Normal University, Dalian 116029, China
| | - Xueming Yang
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of
the Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
| | - Kaijun Yuan
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of
the Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
| | - Junrong Zheng
- State
Key Laboratory of Molecular Reaction Dynamics, Dalian Institute of
the Chemical Physics, Chinese Academy of Sciences, Dalian 116023, Liaoning, China
- Department
of Chemistry, Rice University, Houston, Texas 77005, United States
- College
of Chemistry and Molecular Engineering, Beijing National Laboratory
for Molecular Sciences, Peking University, Beijing 100871, China
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26
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Courtney TL, Fox ZW, Slenkamp KM, Khalil M. Two-dimensional vibrational-electronic spectroscopy. J Chem Phys 2016; 143:154201. [PMID: 26493900 DOI: 10.1063/1.4932983] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Two-dimensional vibrational-electronic (2D VE) spectroscopy is a femtosecond Fourier transform (FT) third-order nonlinear technique that creates a link between existing 2D FT spectroscopies in the vibrational and electronic regions of the spectrum. 2D VE spectroscopy enables a direct measurement of infrared (IR) and electronic dipole moment cross terms by utilizing mid-IR pump and optical probe fields that are resonant with vibrational and electronic transitions, respectively, in a sample of interest. We detail this newly developed 2D VE spectroscopy experiment and outline the information contained in a 2D VE spectrum. We then use this technique and its single-pump counterpart (1D VE) to probe the vibrational-electronic couplings between high frequency cyanide stretching vibrations (νCN) and either a ligand-to-metal charge transfer transition ([Fe(III)(CN)6](3-) dissolved in formamide) or a metal-to-metal charge transfer (MMCT) transition ([(CN)5Fe(II)CNRu(III)(NH3)5](-) dissolved in formamide). The 2D VE spectra of both molecules reveal peaks resulting from coupled high- and low-frequency vibrational modes to the charge transfer transition. The time-evolving amplitudes and positions of the peaks in the 2D VE spectra report on coherent and incoherent vibrational energy transfer dynamics among the coupled vibrational modes and the charge transfer transition. The selectivity of 2D VE spectroscopy to vibronic processes is evidenced from the selective coupling of specific νCN modes to the MMCT transition in the mixed valence complex. The lineshapes in 2D VE spectra report on the correlation of the frequency fluctuations between the coupled vibrational and electronic frequencies in the mixed valence complex which has a time scale of 1 ps. The details and results of this study confirm the versatility of 2D VE spectroscopy and its applicability to probe how vibrations modulate charge and energy transfer in a wide range of complex molecular, material, and biological systems.
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Affiliation(s)
- Trevor L Courtney
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
| | - Zachary W Fox
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
| | - Karla M Slenkamp
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
| | - Munira Khalil
- Department of Chemistry, University of Washington, Box 351700, Seattle, Washington 98195, USA
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27
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El Khoury Y, Van Wilderen LJGW, Bredenbeck J. Ultrafast 2D-IR spectroelectrochemistry of flavin mononucleotide. J Chem Phys 2016; 142:212416. [PMID: 26049436 DOI: 10.1063/1.4916916] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We demonstrate the coupling of ultrafast two-dimensional infrared (2D-IR) spectroscopy to electrochemistry in solution and apply it to flavin mononucleotide, an important cofactor of redox proteins. For this purpose, we designed a spectroelectrochemical cell optimized for 2D-IR measurements in reflection and measured the time-dependent 2D-IR spectra of the oxidized and reduced forms of flavin mononucleotide. The data show anharmonic coupling and vibrational energy transfer between different vibrational modes in the two redox species. Such information is inaccessible with redox-controlled steady-state FTIR spectroscopy. The wide range of applications offered by 2D-IR spectroscopy, such as sub-picosecond structure determination, IR band assignment via energy transfer, disentangling reaction mixtures through band connectivity in the 2D spectra, and the measurement of solvation dynamics and chemical exchange can now be explored under controlled redox potential. The development of this technique furthermore opens new horizons for studying the dynamics of redox proteins.
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Affiliation(s)
- Youssef El Khoury
- Institut für Biophysik, Johann Wolfgang Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
| | - Luuk J G W Van Wilderen
- Institut für Biophysik, Johann Wolfgang Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
| | - Jens Bredenbeck
- Institut für Biophysik, Johann Wolfgang Goethe-Universität, Max-von-Laue-Strasse 1, 60438 Frankfurt am Main, Germany
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28
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van Wilderen LJGW, Bredenbeck J. Von ultraschnellen Strukturbestimmungen bis zum Steuern von Reaktionen: mehrdimensionale gemischte IR/nicht-IR-Schwingungsspektroskopie. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201503155] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
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29
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van Wilderen LJGW, Bredenbeck J. From Ultrafast Structure Determination to Steering Reactions: Mixed IR/Non-IR Multidimensional Vibrational Spectroscopies. Angew Chem Int Ed Engl 2015; 54:11624-40. [PMID: 26394274 DOI: 10.1002/anie.201503155] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2015] [Indexed: 12/27/2022]
Abstract
Ultrafast multidimensional infrared spectroscopy is a powerful method for resolving features of molecular structure and dynamics that are difficult or impossible to address with linear spectroscopy. Augmenting the IR pulse sequences by resonant or nonresonant UV, Vis, or NIR pulses considerably extends the range of application and creates techniques with possibilities far beyond a pure multidimensional IR experiment. These include surface-specific 2D-IR spectroscopy with sub-monolayer sensitivity, ultrafast structure determination in non-equilibrium systems, triggered exchange spectroscopy to correlate reactant and product bands, exploring the interplay of electronic and nuclear degrees of freedom, investigation of interactions between Raman- and IR-active modes, imaging with chemical contrast, sub-ensemble-selective photochemistry, and even steering a reaction by selective IR excitation. We give an overview of useful mixed IR/non-IR pulse sequences, discuss their differences, and illustrate their application potential.
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Affiliation(s)
| | - Jens Bredenbeck
- Institute of Biophysics, Johann Wolfgang Goethe-University, Frankfurt am Main (Germany).
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Delor M, Sazanovich IV, Towrie M, Weinstein JA. Probing and Exploiting the Interplay between Nuclear and Electronic Motion in Charge Transfer Processes. Acc Chem Res 2015; 48:1131-9. [PMID: 25789559 DOI: 10.1021/ar500420c] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
The Born-Oppenheimer approximation refers to the assumption that the nuclear and electronic wave functions describing a molecular system evolve and can be determined independently. It is now well-known that this approximation often breaks down and that nuclear-electronic (vibronic) coupling contributes greatly to the ultrafast photophysics and photochemistry observed in many systems ranging from simple molecules to biological organisms. In order to probe vibronic coupling in a time-dependent manner, one must use spectroscopic tools capable of correlating the motions of electrons and nuclei on an ultrafast time scale. Recent developments in nonlinear multidimensional electronic and vibrational spectroscopies allow monitoring both electronic and structural factors with unprecedented time and spatial resolution. In this Account, we present recent studies from our group that make use of different variants of frequency-domain transient two-dimensional infrared (T-2DIR) spectroscopy, a pulse sequence combining electronic and vibrational excitations in the form of a UV-visible pump, a narrowband (12 cm(-1)) IR pump, and a broadband (400 cm(-1)) IR probe. In the first example, T-2DIR is used to directly compare vibrational dynamics in the ground and relaxed electronic excited states of Re(Cl)(CO)3(4,4'-diethylester-2,2'-bipyridine) and Ru(4,4'-diethylester-2,2'-bipyridine)2(NCS)2, prototypical charge transfer complexes used in photocatalytic CO2 reduction and electron injection in dye-sensitized solar cells. The experiments show that intramolecular vibrational redistribution (IVR) and vibrational energy transfer (VET) are up to an order of magnitude faster in the triplet charge transfer excited state than in the ground state. These results show the influence of electronic arrangement on vibrational coupling patterns, with direct implications for vibronic coupling mechanisms in charge transfer excited states. In the second example, we show unambiguously that electronic and vibrational movement are coupled in a donor-bridge-acceptor complex based on a Pt(II) trans-acetylide design motif. Time-resolved IR (TRIR) spectroscopy reveals that the rate of electron transfer (ET) is highly dependent on the amount of excess energy localized on the bridge following electronic excitation. Using an adaptation of T-2DIR, we are able to selectively perturb bridge-localized vibrational modes during charge separation, resulting in the donor-acceptor charge separation pathway being completely switched off, with all excess energy redirected toward the formation of a long-lived intraligand triplet state. A series of control experiments reveal that this effect is mode specific: it is only when the high-frequency bridging C≡C stretching mode is pumped that radical changes in photoproduct yields are observed. These experiments therefore suggest that one may perturb electronic movement by stimulating structural motion along the reaction coordinate using IR light. These studies add to a growing body of evidence suggesting that controlling the pathways and efficiency of charge transfer may be achieved through synthetic and perturbative approaches aiming to modulate vibronic coupling. Achieving such control would represent a breakthrough for charge transfer-based applications such as solar energy conversion and molecular electronics.
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Affiliation(s)
- Milan Delor
- Department
of Chemistry, University of Sheffield, Sheffield S3 7HF, U.K
| | - Igor V. Sazanovich
- Central
Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, STFC, Chilton, Oxfordshire OX11 0QX, U.K
| | - Michael Towrie
- Central
Laser Facility, Research Complex at Harwell, Rutherford Appleton Laboratory, Harwell Science and Innovation Campus, STFC, Chilton, Oxfordshire OX11 0QX, U.K
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Kruiger JF, van der Vegte CP, Jansen TLC. Suppressing sampling noise in linear and two-dimensional spectral simulations. J Chem Phys 2015; 142:054201. [DOI: 10.1063/1.4907277] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Johannes F. Kruiger
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Cornelis P. van der Vegte
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Thomas L. C. Jansen
- Zernike Institute for Advanced Materials, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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Verma PK, Steinbacher A, Koch F, Nuernberger P, Brixner T. Monitoring ultrafast intramolecular proton transfer processes in an unsymmetric β-diketone. Phys Chem Chem Phys 2015; 17:8459-66. [DOI: 10.1039/c4cp05811a] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Electronic excitation of a UV-absorbing unsymmetric β-diketone discloses intramolecular proton transfer among electronic ground as well as excited states.
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Affiliation(s)
- Pramod Kumar Verma
- Institut für Physikalische und Theoretische Chemie
- Universität Würzburg
- Am Hubland
- Germany
| | - Andreas Steinbacher
- Institut für Physikalische und Theoretische Chemie
- Universität Würzburg
- Am Hubland
- Germany
| | - Federico Koch
- Institut für Physikalische und Theoretische Chemie
- Universität Würzburg
- Am Hubland
- Germany
| | - Patrick Nuernberger
- Institut für Physikalische und Theoretische Chemie
- Universität Würzburg
- Am Hubland
- Germany
- Physikalische Chemie II
| | - Tobias Brixner
- Institut für Physikalische und Theoretische Chemie
- Universität Würzburg
- Am Hubland
- Germany
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Abstract
This Perspective discusses applications of ultrafast transient 2D-IR spectroscopy methods to the study of inorganic excited states.
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Affiliation(s)
- N. T. Hunt
- Department of Physics
- University of Strathclyde
- Glasgow, UK
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