1
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Oger S, Duchemin N, Bendiab YM, Birlirakis N, Skiredj A, Rharrabti S, Jullian JC, Poupon E, Smietana M, Arseniyadis S, Evanno L. Expanding the 'aplysinospin cascade' through DNA-templated [2+2] photocycloaddition. Chem Commun (Camb) 2023; 59:4221-4224. [PMID: 36939749 DOI: 10.1039/d3cc00673e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2023]
Abstract
Inspired by the unique ability of nucleic acids to template chemical transformations that are otherwise impossible in solution, we embarked on the generalisation of our DNA-templated [2+2] photo-induced homo- and heterodimerization of aplysinopsins. Our process ensures a straightforward access to cyclobutane containing natural products and analogues thereof. Most importantly, this conceptual biomimetic achievement presents interesting arguments to build a biosynthetic scenario.
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Affiliation(s)
- Samuel Oger
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Nicolas Duchemin
- Queen Mary University of London, Department of Chemistry, Mile End Road, E1 4NS, London, UK.
| | - Yara Mayssa Bendiab
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Nicolas Birlirakis
- Département de Chimie, Ecole Normale Supérieure, PSL Research University, CNRS, Laboratoire des Biomolecules (LBM), 24 rue Lhomond, 75005, Paris, France
| | - Adam Skiredj
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Somia Rharrabti
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | | | - Erwan Poupon
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, 1919 Route de Mende, 34095, Montpellier, France.
| | - Stellios Arseniyadis
- Queen Mary University of London, Department of Chemistry, Mile End Road, E1 4NS, London, UK.
| | - Laurent Evanno
- Université Paris-Saclay, CNRS, BioCIS, 17, Avenue des Sciences, 91400, Orsay, France.
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2
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Sathyan A, Deng L, Loman T, Palmans AR. Bio-orthogonal catalysis in complex media: Consequences of using polymeric scaffold materials on catalyst stability and activity. Catal Today 2023. [DOI: 10.1016/j.cattod.2023.114116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
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3
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Dong X, Lv S, Qi Q, Gu Y, Wu P, Zhang W, Zhang Z, Yang L, Li J, Chen Y, Wang C. Cyclic Dinucleotide-Based Enantioselective Fluorination in Water. J Org Chem 2023; 88:189-197. [PMID: 36548942 DOI: 10.1021/acs.joc.2c02116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
The diverse structures of DNA serve as potent chiral scaffolds for DNA-based asymmetric catalysis, yet in most cases tens to hundreds of nucleotides in DNA hybrid catalysts hinder the deep insight into their structure-activity relationship. Owing to the structural simplicity and design flexibility of nucleotides, nucleotide-based catalysts have been emerging as a promising way to obtain fine structural information and understand the catalytic mechanisms. Herein, we found that a cyclic dinucleotide of cyclic di-AMP (c-di-AMP) and 1,10-phenanthroline copper(II) nitrate (Cu(phen)(NO3)2) are assembled to a c-di-AMP-based catalyst (c-di-AMP/Cu(phen)(NO3)2), which could fast achieve enantioselective fluorination in water with 90-99% yields and up to 90% enantiomeric excess (ee). The host-guest interaction between c-di-AMP and Cu(phen)(NO3)2 has been proposed mainly in a supramolecular interaction mode as evidenced by spectroscopic techniques of ultraviolet-visible, fluorescence, circular dichroism, and nuclear magnetic resonance. Cu(phen)(NO3)2 tightly binds to c-di-AMP with a binding constant of 1.7 ± 0.3 × 105 M-1, and the assembly of c-di-AMP/Cu(phen)(NO3)2 shows a modest rate enhancement to carbon-fluorine bond formations as supported by kinetic studies.
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Affiliation(s)
- Xingchen Dong
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Shuting Lv
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Qianqian Qi
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Youkun Gu
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Peizhe Wu
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Wenyue Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Zhuolin Zhang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Libing Yang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Jiaqi Li
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Yashao Chen
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China
| | - Changhao Wang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an710119, China.,Xi'an Key Laboratory of Organometallic Material Chemistry, Shaanxi Normal University, Xi'an710119, China
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4
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Mass OA, Basu S, Patten LK, Terpetschnig EA, Krivoshey AI, Tatarets AL, Pensack RD, Yurke B, Knowlton WB, Lee J. Exciton Chirality Inversion in Dye Dimers Templated by DNA Holliday Junction. J Phys Chem Lett 2022; 13:10688-10696. [PMID: 36355575 PMCID: PMC9706552 DOI: 10.1021/acs.jpclett.2c02721] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2022] [Accepted: 10/31/2022] [Indexed: 06/16/2023]
Abstract
While only one enantiomer of chiral biomolecules performs a biological function, access to both enantiomers (or enantiomorphs) proved to be advantageous for technology. Using dye covalent attachment to a DNA Holliday junction (HJ), we created two pairs of dimers of bis(chloroindolenine)squaraine dye that enabled strongly coupled molecular excitons of opposite chirality in solution. The exciton chirality inversion was achieved by interchanging single covalent linkers of unequal length tethering the dyes of each dimer to the HJ core. Dimers in each pair exhibited profound exciton-coupled circular dichroism (CD) couplets of opposite signs. Dimer geometries, modeled by simultaneous fitting absorption and CD spectra, were related in each pair as nonsuperimposable and nearly exact mirror images. The origin of observed exciton chirality inversion was explained in the view of isomerization of the stacked Holliday junction. This study will open new opportunities for creating excitonic DNA-based materials that rely on programmable system chirality.
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Affiliation(s)
- Olga A. Mass
- Micron
School of Materials Science & Engineering, Department of Electrical
& Computer Engineering, and Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
| | - Shibani Basu
- Micron
School of Materials Science & Engineering, Department of Electrical
& Computer Engineering, and Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
| | - Lance K. Patten
- Micron
School of Materials Science & Engineering, Department of Electrical
& Computer Engineering, and Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
| | - Ewald A. Terpetschnig
- SETA
BioMedicals, LLC, 2014
Silver Court East, Urbana, Illinois 61801, United
States
| | - Alexander I. Krivoshey
- SSI
“Institute for Single Crystals” of the National Academy
of Sciences of Ukraine, 60 Nauky Ave., 61072 Kharkiv, Ukraine
| | - Anatoliy L. Tatarets
- SSI
“Institute for Single Crystals” of the National Academy
of Sciences of Ukraine, 60 Nauky Ave., 61072 Kharkiv, Ukraine
| | - Ryan D. Pensack
- Micron
School of Materials Science & Engineering, Department of Electrical
& Computer Engineering, and Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
| | - Bernard Yurke
- Micron
School of Materials Science & Engineering, Department of Electrical
& Computer Engineering, and Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
| | - William B. Knowlton
- Micron
School of Materials Science & Engineering, Department of Electrical
& Computer Engineering, and Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
| | - Jeunghoon Lee
- Micron
School of Materials Science & Engineering, Department of Electrical
& Computer Engineering, and Department of Chemistry and Biochemistry, Boise State University, Boise, Idaho 83725, United States
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5
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Leveson‐Gower RB, Roelfes G. Biocatalytic Friedel-Crafts Reactions. ChemCatChem 2022; 14:e202200636. [PMID: 36606067 PMCID: PMC9804301 DOI: 10.1002/cctc.202200636] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2022] [Revised: 07/10/2022] [Indexed: 01/07/2023]
Abstract
Friedel-Crafts alkylation and acylation reactions are important methodologies in synthetic and industrial chemistry for the construction of aryl-alkyl and aryl-acyl linkages that are ubiquitous in bioactive molecules. Nature also exploits these reactions in many biosynthetic processes. Much work has been done to expand the synthetic application of these enzymes to unnatural substrates through directed evolution. The promise of such biocatalysts is their potential to supersede inefficient and toxic chemical approaches to these reactions, with mild operating conditions - the hallmark of enzymes. Complementary work has created many bio-hybrid Friedel-Crafts catalysts consisting of chemical catalysts anchored into biomolecular scaffolds, which display many of the same desirable characteristics. In this Review, we summarise these efforts, focussing on both mechanistic aspects and synthetic considerations, concluding with an overview of the frontiers of this field and routes towards more efficient and benign Friedel-Crafts reactions for the future of humankind.
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Affiliation(s)
| | - Gerard Roelfes
- Stratingh Institute for ChemistryUniversity of Groningen9747 AGGroningenThe Netherlands
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6
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Duchemin N, Aubert S, de Souza JV, Bethge L, Vonhoff S, Bronowska AK, Smietana M, Arseniyadis S. New Benchmark in DNA-Based Asymmetric Catalysis: Prevalence of Modified DNA/RNA Hybrid Systems. JACS AU 2022; 2:1910-1917. [PMID: 36032523 PMCID: PMC9400053 DOI: 10.1021/jacsau.2c00271] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/04/2022] [Revised: 06/27/2022] [Accepted: 07/22/2022] [Indexed: 06/15/2023]
Abstract
By harnessing the chirality of the DNA double helix, chemists have been able to obtain new, reliable, selective, and environmentally friendly biohybrid catalytic systems with tailor-made functions. Nonetheless, despite all the advances made throughout the years in the field of DNA-based asymmetric catalysis, many challenges still remain to be faced, in particular when it comes to designing a "universal" catalyst with broad reactivity and unprecedented selectivity. Rational design and rounds of selection have allowed us to approach this goal. We report here the development of a DNA/RNA hybrid catalytic system featuring a covalently attached bipyridine ligand, which exhibits unmatched levels of selectivity throughout the current DNA toolbox and opens new avenues in asymmetric catalysis.
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Affiliation(s)
- Nicolas Duchemin
- Queen
Mary University of London, Department of Chemistry, Mile End Road, London E1 4NS, United
Kingdom
- NOXXON
Pharma AG, Max-Dohrn-Strasse 8-10, Berlin 10589, Germany
| | - Sidonie Aubert
- Queen
Mary University of London, Department of Chemistry, Mile End Road, London E1 4NS, United
Kingdom
| | - João V. de Souza
- Chemistry−School
of Natural and Environmental Sciences, Newcastle
University, Newcastle NE1 7RU, United Kingdom
| | - Lucas Bethge
- NOXXON
Pharma AG, Max-Dohrn-Strasse 8-10, Berlin 10589, Germany
| | - Stefan Vonhoff
- NOXXON
Pharma AG, Max-Dohrn-Strasse 8-10, Berlin 10589, Germany
| | - Agnieszka K. Bronowska
- Chemistry−School
of Natural and Environmental Sciences, Newcastle
University, Newcastle NE1 7RU, United Kingdom
| | - Michael Smietana
- Institut
des Biomolécules Max Mousseron, Université
de Montpellier, CNRS, ENSCM, 1919 Route de Mende, Montpellier 34095, France
| | - Stellios Arseniyadis
- Queen
Mary University of London, Department of Chemistry, Mile End Road, London E1 4NS, United
Kingdom
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7
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Kumar V, Turnbull WB, Kumar A. Review on Recent Developments in Biocatalysts for Friedel–Crafts Reactions. ACS Catal 2022. [DOI: 10.1021/acscatal.2c01134] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Vajinder Kumar
- Department of Chemistry, Akal University, Talwandi Sabo, Bathinda, Punjab 151302, India
| | - W. Bruce Turnbull
- School of Chemistry and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds LS2 9JT, U.K
| | - Avneesh Kumar
- Department of Botany, Akal University, Talwandi Sabo, Bathinda, Punjab 151302, India
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8
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Festa C, Esposito V, Benigno D, De Marino S, Zampella A, Virgilio A, Galeone A. Discovering New G-Quadruplex DNA Catalysts in Enantioselective Sulfoxidation Reaction. Int J Mol Sci 2022; 23:ijms23031092. [PMID: 35163018 PMCID: PMC8835054 DOI: 10.3390/ijms23031092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2021] [Revised: 01/11/2022] [Accepted: 01/17/2022] [Indexed: 02/05/2023] Open
Abstract
The natural human telomeric G-quadruplex (G4) sequence d(GGGTTAGGGTTAGGGTTAGGG) HT21 was extensively utilized as a G4 DNA-based catalytic system for enantioselective reactions. Nine oligonucleotides (ODNs) based on this sequence and containing 8-bromo-2′-deoxyadenosine (ABr), 8-oxo-2′-deoxyadenosine (Aoxo) or β-L-2′-deoxyadenosine (AL) at different single loop positions were investigated to evaluate their performances as DNA catalysts in an enantioselective sulfoxidation reaction of thioanisole. The substitution of an adenosine in the loops of HT21 with these modified residues had a negligible impact on the G4 DNA structural features, thermal stability, and catalytic activity, since almost all investigated ODNs were able to form G-quadruplexes strictly resembling that of HT21 and catalyze a full conversion of the thioanisole substrate. More marked effects were obtained in chiral selectivity of G4 DNA metalloenzymes, considering that in most cases the DNA-modified catalysts induced lower enantioselectivities compared to the natural one. However, the HT21 derivative containing an AL residue in the first loop sequence significantly proved to be capable of producing about 84% enantiomeric excess, the highest enantioselectivity for DNA-based oxidation reaction to date.
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9
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Abstract
Organophosphorus compounds play a vital role as nucleic acids, nucleotide coenzymes, metabolic intermediates and are involved in many biochemical processes. They are part of DNA, RNA, ATP and a number of important biological elements of living organisms. Synthetic compounds of this class have found practical application as agrochemicals, pharmaceuticals, bioregulators, and othrs. In recent years, a large number of phosphorus compounds containing P-O, P-N, P-C bonds have been isolated from natural sources. Many of them have shown interesting biological properties and have become the objects of intensive scientific research. Most of these compounds contain asymmetric centers, the absolute configurations of which have a significant effect on the biological properties of the products of their transformations. This area of research on natural phosphorus compounds is still little-studied, that prompted us to analyze and discuss it in our review. Moreover natural organophosphorus compounds represent interesting models for the development of new biologically active compounds, and a number of promising drugs and agrochemicals have already been obtained on their basis. The review also discusses the history of the development of ideas about the role of organophosphorus compounds and stereochemistry in the origin of life on Earth, starting from the prebiotic period, that allows us in a new way to consider this most important problem of fundamental science.
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10
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Duchemin N, Cattoen M, Gayraud O, Anselmi S, Siddiq B, Buccafusca R, Daumas M, Ferey V, Smietana M, Arseniyadis S. Direct Access to Highly Enantioenriched α-Branched Acrylonitriles through a One-Pot Sequential Asymmetric Michael Addition/Retro-Dieckmann/Retro-Michael Fragmentation Cascade. Org Lett 2020; 22:5995-6000. [PMID: 32790425 DOI: 10.1021/acs.orglett.0c02079] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A highly enantioselective synthesis of α-branched acrylonitriles is reported featuring a one-pot sequential asymmetric Michael addition/retro-Dieckmann/retro-Michael fragmentation cascade. The method, which relies on a solid, bench-stable, and commercially available acrylonitrile surrogate, is practical, scalable, and highly versatile and provides a direct access to a wide range of enantioenriched nitrile-containing building blocks. Most importantly, the method offers a new tool to incorporate an acrylonitrile moiety in an asymmetric fashion.
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Affiliation(s)
- Nicolas Duchemin
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, London E1 4NS, U.K
| | - Martin Cattoen
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, London E1 4NS, U.K
| | - Oscar Gayraud
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, London E1 4NS, U.K
| | - Silvia Anselmi
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, London E1 4NS, U.K
| | - Bilal Siddiq
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, London E1 4NS, U.K
| | - Roberto Buccafusca
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, London E1 4NS, U.K
| | - Marc Daumas
- Sanofi Chimie, Route d'Avignon, 30390 Aramon, France
| | - Vincent Ferey
- Sanofi R&D, 371 rue du Professeur Blayac, 34080 Montpellier, France
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron, Université de Montpellier, CNRS, ENSCM, Place Eugène Bataillon, 34095 Montpellier, France
| | - Stellios Arseniyadis
- Queen Mary University of London, School of Biological and Chemical Sciences, Mile End Road, London E1 4NS, U.K
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11
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Dey S, Jäschke A. Covalently Functionalized DNA Duplexes and Quadruplexes as Hybrid Catalysts in an Enantioselective Friedel-Crafts Reaction. Molecules 2020; 25:E3121. [PMID: 32650544 PMCID: PMC7397069 DOI: 10.3390/molecules25143121] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 06/19/2020] [Accepted: 07/02/2020] [Indexed: 12/01/2022] Open
Abstract
The precise site-specific positioning of metal-ligand complexes on various DNA structures through covalent linkages has gained importance in the development of hybrid catalysts for aqueous-phase homogeneous catalysis. Covalently modified double-stranded and G-quadruplex DNA-based hybrid catalysts have been investigated separately. To understand the role of different DNA secondary structures in enantioselective Friedel-Crafts alkylation, a well-known G-quadruplex-forming sequence was covalently modified at different positions. The catalytic performance of this modified DNA strand was studied in the presence and absence of a complementary DNA sequence, resulting in the formation of two different secondary structures, namely duplex and G-quadruplex. Indeed, the secondary structures had a tremendous effect on both the yield and stereoselectivity of the catalyzed reaction. In addition, the position of the modification, the topology of the DNA, the nature of the ligand, and the length of the linker between ligand and DNA were found to modulate the catalytic performance of the hybrid catalysts. Using the optimal linker length, the quadruplexes formed the (-)-enantiomer with up to 65% ee, while the duplex yielded the (+)-enantiomer with up to 62% ee. This study unveils a new and simple way to control the stereochemical outcome of a Friedel-Crafts reaction.
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Affiliation(s)
| | - Andres Jäschke
- Institute of Pharmacy and Molecular Biotechnology, Heidelberg University, 69120 Heidelberg, Germany;
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12
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Hao J, Miao W, Cheng Y, Lu S, Jia G, Li C. Enantioselective Olefin Cyclopropanation with G-Quadruplex DNA-Based Biocatalysts. ACS Catal 2020. [DOI: 10.1021/acscatal.0c01203] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Affiliation(s)
- Jingya Hao
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Wenhui Miao
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yu Cheng
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian 116023, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Shengmei Lu
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian 116023, China
| | - Guoqing Jia
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian 116023, China
| | - Can Li
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Zhongshan Road 457, Dalian 116023, China
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13
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Surin M, Ulrich S. From Interaction to Function in DNA-Templated Supramolecular Self-Assemblies. ChemistryOpen 2020; 9:480-498. [PMID: 32328404 PMCID: PMC7175023 DOI: 10.1002/open.202000013] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2020] [Revised: 03/24/2020] [Indexed: 12/13/2022] Open
Abstract
DNA-templated self-assembly represents a rich and growing subset of supramolecular chemistry where functional self-assemblies are programmed in a versatile manner using nucleic acids as readily-available and readily-tunable templates. In this review, we summarize the different DNA recognition modes and the basic supramolecular interactions at play in this context. We discuss the recent results that report the DNA-templated self-assembly of small molecules into complex yet precise nanoarrays, going from 1D to 3D architectures. Finally, we show their emerging functions as photonic/electronic nanowires, sensors, gene delivery vectors, and supramolecular catalysts, and their growing applications in a wide range of area from materials to biological sciences.
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Affiliation(s)
- Mathieu Surin
- Laboratory for Chemistry of Novel MaterialsCenter of Innovation and Research in Materials and Polymers (CIRMAP)University of Mons-UMONS7000MonsBelgium
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14
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Mansot J, Lauberteaux J, Lebrun A, Mauduit M, Vasseur J, Marcia de Figueiredo R, Arseniyadis S, Campagne J, Smietana M. DNA‐Based Asymmetric Inverse Electron‐Demand Hetero‐Diels–Alder. Chemistry 2020; 26:3519-3523. [DOI: 10.1002/chem.202000516] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Indexed: 01/16/2023]
Affiliation(s)
- Justine Mansot
- Institut des Biomolécules Max MousseronUniversité de MontpellierCNRS, ENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Jimmy Lauberteaux
- Institut Charles GerhardtCNRSUniversité de MontpellierENSCM, Avenue Emile Jeanbrau 34296 Montpellier France
| | - Aurélien Lebrun
- Institut des Biomolécules Max MousseronUniversité de MontpellierCNRS, ENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Marc Mauduit
- Ecole Nationale Supérieure de Chimie de RennesCNRS, ISCR UMR 6226Univ Rennes 35000 Rennes France
| | - Jean‐Jacques Vasseur
- Institut des Biomolécules Max MousseronUniversité de MontpellierCNRS, ENSCM Place Eugène Bataillon 34095 Montpellier France
| | | | - Stellios Arseniyadis
- School of Biological and Chemical SciencesQueen Mary University of London Mile End Road London E1 4NS UK
| | - Jean‐Marc Campagne
- Institut Charles GerhardtCNRSUniversité de MontpellierENSCM, Avenue Emile Jeanbrau 34296 Montpellier France
| | - Michael Smietana
- Institut des Biomolécules Max MousseronUniversité de MontpellierCNRS, ENSCM Place Eugène Bataillon 34095 Montpellier France
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15
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Mansot J, Vasseur J, Arseniyadis S, Smietana M. α,β‐Unsaturated 2‐Acyl‐Imidazoles in Asymmetric Biohybrid Catalysis. ChemCatChem 2019. [DOI: 10.1002/cctc.201900743] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Justine Mansot
- Institut des Biomolécules Max MousseronUMR 5247 CNRS Université de Montpellier, ENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Jean‐Jacques Vasseur
- Institut des Biomolécules Max MousseronUMR 5247 CNRS Université de Montpellier, ENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Stellios Arseniyadis
- Queen Mary University of LondonSchool of Biological and Chemical Sciences Mile End Road E1 4NS London UK
| | - Michael Smietana
- Institut des Biomolécules Max MousseronUMR 5247 CNRS Université de Montpellier, ENSCM Place Eugène Bataillon 34095 Montpellier France
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16
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Yum JH, Park S, Hiraga R, Okamura I, Notsu S, Sugiyama H. Modular DNA-based hybrid catalysts as a toolbox for enantioselective hydration of α,β-unsaturated ketones. Org Biomol Chem 2019; 17:2548-2553. [PMID: 30762058 DOI: 10.1039/c9ob00196d] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Abstract
The direct addition of water to a carbon-carbon double bond remains a challenge, but such a reaction is essential for the development of efficient catalysts that enable direct access to chiral alcohols. We now report on the enantioselective hydration of α,β-unsaturated ketones, catalyzed by modular DNA-based hybrid catalysts, affording β-hydroxy ketones with up to 87% enantiomeric excess. Oligonucleotides containing an intrastrand bipyridine ligand were readily synthesized by a straightforward process using an automated solid-phase synthesis. A library of DNA-based hybrid catalysts could be systematically generated based on the composition of nucleobases, and the incorporation of a binding ligand and a nonbinding steric moiety. This study demonstrates the potential of modular DNA-based hybrid catalysts as a toolbox to accomplish the challenging enantioselective hydration reaction.
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Affiliation(s)
- Ji Hye Yum
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan.
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17
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Mansot J, Aubert S, Duchemin N, Vasseur JJ, Arseniyadis S, Smietana M. A rational quest for selectivity through precise ligand-positioning in tandem DNA-catalysed Friedel-Crafts alkylation/asymmetric protonation. Chem Sci 2019; 10:2875-2881. [PMID: 30996865 PMCID: PMC6429601 DOI: 10.1039/c8sc05543b] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2018] [Accepted: 01/22/2019] [Indexed: 12/28/2022] Open
Abstract
Covalent anchorage of a metallic co-factor to a DNA-based architecture is merely the only way to ensure an accurate positioning of a catalytic site within the chiral micro-environment offered by the DNA double helix. Ultimately, it also allows a fine-tuning of the catalytic pocket through simple synthetic modifications of the DNA sequence. Here, we report highly selective copper(ii)-catalysed asymmetric Friedel-Crafts conjugate addition/enantioselective protonation, which is due to a careful positioning of a bipyridine ligand within a DNA framework. Most importantly, this study unveils specific structural features that account for an optimal chirality transfer from the duplex to the Friedel-Crafts adducts.
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Affiliation(s)
- Justine Mansot
- Institut des Biomolécules Max Mousseron , CNRS , Université de Montpellier , ENSCM , Place Eugène Bataillon , 34095 Montpellier , France .
| | - Sidonie Aubert
- School of Biological and Chemical Sciences , Queen Mary University of London , Joseph Priestley Building, Mile End Road , London E1 4NS , UK .
| | - Nicolas Duchemin
- School of Biological and Chemical Sciences , Queen Mary University of London , Joseph Priestley Building, Mile End Road , London E1 4NS , UK .
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron , CNRS , Université de Montpellier , ENSCM , Place Eugène Bataillon , 34095 Montpellier , France .
| | - Stellios Arseniyadis
- School of Biological and Chemical Sciences , Queen Mary University of London , Joseph Priestley Building, Mile End Road , London E1 4NS , UK .
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron , CNRS , Université de Montpellier , ENSCM , Place Eugène Bataillon , 34095 Montpellier , France .
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18
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Gao M, Ye R, Shen W, Xu B. Copper nitrate: a privileged reagent for organic synthesis. Org Biomol Chem 2019; 16:2602-2618. [PMID: 29565088 DOI: 10.1039/c8ob00332g] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Abstract
Copper has been explored as an ideal candidate for replacing noble metals in organic synthesis, especially for practical large scale preparation. Recent decades have witnessed the renaissance and improvement of copper-catalyzed and copper-mediated organic reactions. Copper nitrate is a common inorganic copper salt which has been proved to be a ubiquitous reactant in organic synthesis due to its commercial availability, stability, inexpensiveness and environmentally benign nature. Copper nitrate could be used as a nitration reagent, oxidant, catalyst or promoter, and Lewis acid as well. Remarkably, great attention has been devoted to the efficient transformation of copper nitrate into functionalized or complicated compounds through various reaction types including cyclization, C-H activation, difunctionalization, nitration, rearrangement and asymmetric synthesis with chiral ligands. Further modification of copper nitrate, such as solid-supported copper nitrate or copper nitrate complexes, extends its applications in organic synthesis. The present review highlights recent advances of copper nitrate in organic synthesis, along with the mechanisms.
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Affiliation(s)
- Mingchun Gao
- Department of Chemistry, Innovative Drug Research Center, School of Materials Science and Engineering, Qianweichang College, Shanghai University, Shanghai 200444, China.
| | - Rongxuan Ye
- Department of Chemistry, Innovative Drug Research Center, School of Materials Science and Engineering, Qianweichang College, Shanghai University, Shanghai 200444, China.
| | - Weijia Shen
- Department of Chemistry, Innovative Drug Research Center, School of Materials Science and Engineering, Qianweichang College, Shanghai University, Shanghai 200444, China.
| | - Bin Xu
- Department of Chemistry, Innovative Drug Research Center, School of Materials Science and Engineering, Qianweichang College, Shanghai University, Shanghai 200444, China. and State Key Laboratory of Organometallic Chemistry, Shanghai Institute of Organic Chemistry, Chinese Academy of Sciences, Shanghai 200032, China
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19
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Chen J, Zhang Y, Cheng M, Guo Y, Šponer J, Monchaud D, Mergny JL, Ju H, Zhou J. How Proximal Nucleobases Regulate the Catalytic Activity of G-Quadruplex/Hemin DNAzymes. ACS Catal 2018. [DOI: 10.1021/acscatal.8b03811] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
Affiliation(s)
- Jielin Chen
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Yingying Zhang
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Mingpan Cheng
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Yuehua Guo
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jiri Šponer
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic
| | - David Monchaud
- Institut de Chimie Moléculaire (ICMUB), CNRS UMR6302, UBFC Dijon 21078, France
| | - Jean-Louis Mergny
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
- Institute of Biophysics of the Czech Academy of Sciences, Královopolská 135, 612 65 Brno, Czech Republic
- Université de Bordeaux, INSERM U1212, CNRS UMR 5320, ARNA Laboratory, IECB, 33600 Pessac, France
| | - Huangxian Ju
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
| | - Jun Zhou
- State Key Laboratory of Analytical Chemistry for Life Science, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing 210023, China
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20
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Cheng Y, Cheng M, Hao J, Jia G, Li C. Fluorescence Spectroscopic Insight into the Supramolecular Interactions in DNA-Based Enantioselective Sulfoxidation. Chembiochem 2018; 19:2233-2240. [PMID: 30070000 DOI: 10.1002/cbic.201800393] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2018] [Indexed: 12/31/2022]
Abstract
Interactions of copper(II)-bipyridine cofactors and thioanisole substrate with human telomeric G-quadruplex DNA were studied by UV/Vis absorption, circular dichroism, and fluorescence quenching titration. Three copper(II)-bipyridine complexes are equivalently anchored to the G-quadruplex scaffold at all five fluorescently labeled sites. Thioanisole interacts with the DNA architecture at both the second loop and 3' terminus in the absence or presence of copper(II)-bipyridine complexes. These nonspecificities in the weak interactions of CuII complexes and thioanisole with G-quadruplex might explain why DNA only affords a modest enantioselectivity in the oxidation of thioanisole. These findings provide insights toward the construction of highly enantioselective DNA-based catalysts.
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Affiliation(s)
- Yu Cheng
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P.R. China.,Department of Chemical Physics, University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, P.R. China
| | - Mingpan Cheng
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P.R. China.,Department of Chemical Physics, University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, P.R. China
| | - Jingya Hao
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P.R. China.,Department of Chemical Physics, University of Chinese Academy of Sciences, No. 19A Yuquan Road, Beijing, 100049, P.R. China
| | - Guoqing Jia
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P.R. China
| | - Can Li
- State Key Laboratory of Catalysis, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, 457 Zhongshan Road, Dalian, 116023, P.R. China
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21
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Duchemin N, Skiredj A, Mansot J, Leblanc K, Vasseur J, Beniddir MA, Evanno L, Poupon E, Smietana M, Arseniyadis S. DNA‐Templated [2+2] Photocycloaddition: A Straightforward Entry into the Aplysinopsin Family of Natural Products. Angew Chem Int Ed Engl 2018; 57:11786-11791. [DOI: 10.1002/anie.201806357] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2018] [Indexed: 12/12/2022]
Affiliation(s)
- Nicolas Duchemin
- Queen Mary University of LondonSchool of Biological and Chemical Sciences Mile End Road London E1 4NS UK
| | - Adam Skiredj
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Justine Mansot
- Institut des Biomolécules Max MousseronCNRS, UMR 5247 Université de MontpellierENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Karine Leblanc
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Jean‐Jacques Vasseur
- Institut des Biomolécules Max MousseronCNRS, UMR 5247 Université de MontpellierENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Mehdi A. Beniddir
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Laurent Evanno
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Erwan Poupon
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCISUniversité Paris-SudUniversité Paris-Saclay 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Michael Smietana
- Institut des Biomolécules Max MousseronCNRS, UMR 5247 Université de MontpellierENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Stellios Arseniyadis
- Queen Mary University of LondonSchool of Biological and Chemical Sciences Mile End Road London E1 4NS UK
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22
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Duchemin N, Skiredj A, Mansot J, Leblanc K, Vasseur JJ, Beniddir MA, Evanno L, Poupon E, Smietana M, Arseniyadis S. DNA-Templated [2+2] Photocycloaddition: A Straightforward Entry into the Aplysinopsin Family of Natural Products. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201806357] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Nicolas Duchemin
- Queen Mary University of London; School of Biological and Chemical Sciences; Mile End Road London E1 4NS UK
| | - Adam Skiredj
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Justine Mansot
- Institut des Biomolécules Max Mousseron; CNRS, UMR 5247 Université de Montpellier; ENSCM; Place Eugène Bataillon 34095 Montpellier France
| | - Karine Leblanc
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron; CNRS, UMR 5247 Université de Montpellier; ENSCM; Place Eugène Bataillon 34095 Montpellier France
| | - Mehdi A. Beniddir
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Laurent Evanno
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Erwan Poupon
- Laboratoire de Pharmacognosie associé au CNRS, UMR 8076 BioCIS; Université Paris-Sud; Université Paris-Saclay; 5 rue Jean-Baptiste Clément 92296 Châtenay-Malabry France
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron; CNRS, UMR 5247 Université de Montpellier; ENSCM; Place Eugène Bataillon 34095 Montpellier France
| | - Stellios Arseniyadis
- Queen Mary University of London; School of Biological and Chemical Sciences; Mile End Road London E1 4NS UK
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23
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Tan Y, Harms K, Meggers E. A Chiral‐at‐Metal Iridium Catalyst with Two Simple but Sterically Demanding Cyclometalated N‐Heterocyclic Carbene Ligands. Eur J Inorg Chem 2018. [DOI: 10.1002/ejic.201800450] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Yuqi Tan
- Fachbereich Chemie Philipps‐Universität Marburg Hans‐Meerwein‐Straße 4 35043 Marburg Germany
| | - Klaus Harms
- Fachbereich Chemie Philipps‐Universität Marburg Hans‐Meerwein‐Straße 4 35043 Marburg Germany
| | - Eric Meggers
- Fachbereich Chemie Philipps‐Universität Marburg Hans‐Meerwein‐Straße 4 35043 Marburg Germany
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24
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25
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Probing the interaction of copper cofactor and azachalcone substrate with G-quadruplex of DNA based Diels-Alderase by site-specific fluorescence quenching titration. Biochimie 2018; 146:20-27. [DOI: 10.1016/j.biochi.2017.11.001] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2017] [Accepted: 11/02/2017] [Indexed: 01/18/2023]
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26
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Sampani SI, Aubert S, Cattoen M, Griffiths K, Abdul-Sada A, Akien GR, Tizzard GJ, Coles SJ, Arseniyadis S, Kostakis GE. Dinucleating Schiff base ligand in Zn/4f coordination chemistry: synthetic challenges and catalytic activity evaluation. Dalton Trans 2018; 47:4486-4493. [DOI: 10.1039/c8dt00538a] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
Synthetic challenges and catalytic activity evaluation of Zn/(Dy,Y) coordination clusters derived from a dinucleating Schiff base ligand.
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Affiliation(s)
- Stavroula I. Sampani
- Department of Chemistry
- School of Life Sciences
- University of Sussex
- Brighton BN1 9QJ
- UK
| | - Sidonie Aubert
- Queen Mary University of London
- School of Biological and Chemical Sciences
- London
- UK
| | - Martin Cattoen
- Queen Mary University of London
- School of Biological and Chemical Sciences
- London
- UK
| | - Kieran Griffiths
- Department of Chemistry
- School of Life Sciences
- University of Sussex
- Brighton BN1 9QJ
- UK
| | - Alaa Abdul-Sada
- Department of Chemistry
- School of Life Sciences
- University of Sussex
- Brighton BN1 9QJ
- UK
| | | | - Graham J. Tizzard
- UK National Crystallography Service
- Chemistry
- University of Southampton
- UK
| | - Simon J. Coles
- UK National Crystallography Service
- Chemistry
- University of Southampton
- UK
| | - Stellios Arseniyadis
- Queen Mary University of London
- School of Biological and Chemical Sciences
- London
- UK
| | - George E. Kostakis
- Department of Chemistry
- School of Life Sciences
- University of Sussex
- Brighton BN1 9QJ
- UK
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27
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Kitanosono T, Masuda K, Xu P, Kobayashi S. Catalytic Organic Reactions in Water toward Sustainable Society. Chem Rev 2017; 118:679-746. [PMID: 29218984 DOI: 10.1021/acs.chemrev.7b00417] [Citation(s) in RCA: 382] [Impact Index Per Article: 54.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Traditional organic synthesis relies heavily on organic solvents for a multitude of tasks, including dissolving the components and facilitating chemical reactions, because many reagents and reactive species are incompatible or immiscible with water. Given that they are used in vast quantities as compared to reactants, solvents have been the focus of environmental concerns. Along with reducing the environmental impact of organic synthesis, the use of water as a reaction medium also benefits chemical processes by simplifying operations, allowing mild reaction conditions, and sometimes delivering unforeseen reactivities and selectivities. After the "watershed" in organic synthesis revealed the importance of water, the development of water-compatible catalysts has flourished, triggering a quantum leap in water-centered organic synthesis. Given that organic compounds are typically practically insoluble in water, simple extractive workup can readily separate a water-soluble homogeneous catalyst as an aqueous solution from a product that is soluble in organic solvents. In contrast, the use of heterogeneous catalysts facilitates catalyst recycling by allowing simple centrifugation and filtration methods to be used. This Review addresses advances over the past decade in catalytic reactions using water as a reaction medium.
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Affiliation(s)
- Taku Kitanosono
- Department of Chemistry, School of Science, The University of Tokyo , Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Koichiro Masuda
- Department of Chemistry, School of Science, The University of Tokyo , Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Pengyu Xu
- Department of Chemistry, School of Science, The University of Tokyo , Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
| | - Shu Kobayashi
- Department of Chemistry, School of Science, The University of Tokyo , Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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28
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Wang J, Wang P, Wang L, Li D, Wang K, Wang Y, Zhu H, Yang D, Wang R. Nickel-Mediated Asymmetric Allylic Alkylation between Nitroallylic Acetates and Acyl Imidazoles. Org Lett 2017; 19:4826-4829. [PMID: 28862455 DOI: 10.1021/acs.orglett.7b02264] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
A nickel-mediated asymmetric allylic alkylation reaction between imidazole-modified ketones and nitroallylic acetates is presented. This reaction is catalyzed by a simple chiral diamine-nickel catalyst under mild conditions and leads to a series of novel enantioenriched α-allylic adducts in moderate to good yields with excellent enantioselectivities. Furthermore, transformation of the allylic adducts could smoothly lead to chiral γ-nitro-esters containing three continuous stereocenters in good yields.
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Affiliation(s)
- Jie Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Pengxin Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Linqing Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Dan Li
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Kezhou Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Yuan Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Haiyong Zhu
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Dongxu Yang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
| | - Rui Wang
- Key Laboratory of Preclinical Study for New Drugs of Gansu Province, School of Basic Medical Sciences, Lanzhou University , Lanzhou, 730000, China
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29
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Sakashita S, Park S, Sugiyama H. Copper-containing DNA–Silica Mineral Complexes for the Asymmetric Diels–Alder Reaction. CHEM LETT 2017. [DOI: 10.1246/cl.170411] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Sohei Sakashita
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502
| | - Soyoung Park
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502
| | - Hiroshi Sugiyama
- Department of Chemistry, Graduate School of Science, Kyoto University, Kitashirakawa-Oiwakecho, Sakyo-ku, Kyoto 606-8502
- Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University, Yoshida-Ushinomiyacho, Sakyo-ku, Kyoto 606-8501
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30
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Dey S, Rühl CL, Jäschke A. Catalysis of Michael Additions by Covalently Modified G-Quadruplex DNA. Chemistry 2017; 23:12162-12170. [DOI: 10.1002/chem.201700632] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2017] [Indexed: 02/06/2023]
Affiliation(s)
- Surjendu Dey
- Institute of Pharmacy and Molecular Biotechnology; Heidelberg University; 69120 Heidelberg Germany
| | - Carmen L. Rühl
- Institute of Pharmacy and Molecular Biotechnology; Heidelberg University; 69120 Heidelberg Germany
| | - Andres Jäschke
- Institute of Pharmacy and Molecular Biotechnology; Heidelberg University; 69120 Heidelberg Germany
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31
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Marek JJ, Hennecke U. Why DNA Is a More Effective Scaffold than RNA in Nucleic Acid-Based Asymmetric Catalysis-Supramolecular Control of Cooperative Effects. Chemistry 2017; 23:6009-6013. [DOI: 10.1002/chem.201606043] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2016] [Indexed: 11/11/2022]
Affiliation(s)
- Jasmin J. Marek
- Organisch-Chemisches Institut; Westfälische Wilhelms-Universität Münster; Correnstraße 40 48149 Münster Germany
| | - Ulrich Hennecke
- Organisch-Chemisches Institut; Westfälische Wilhelms-Universität Münster; Correnstraße 40 48149 Münster Germany
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32
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Marek JJ, Singh RP, Heuer A, Hennecke U. Enantioselective Catalysis by Using Short, Structurally Defined DNA Hairpins as Scaffold for Hybrid Catalysts. Chemistry 2017; 23:6004-6008. [PMID: 28029714 DOI: 10.1002/chem.201606002] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2016] [Indexed: 11/09/2022]
Abstract
A new type of DNA metal complex hybrid catalyst, which is based on single-stranded DNA oligonucleotides, is described. It was shown that oligonucleotides as short as 14 nucleotides that fold into hairpin structures are suitable as nucleic acid components for DNA hybrid catalysts. With these catalysts, excellent enantioinduction in asymmetric Diels-Alder reactions with selectivity values as high as 96 % enantiomeric excess (ee) can be achieved. Molecular dynamics simulations indicate that a rather flexible loop combined with a rigid stem region provides DNA scaffolds with these high selectivity values.
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Affiliation(s)
- Jasmin J Marek
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität, Corrensstrasse 40, 48149, Münster, Germany
| | - Raghvendra P Singh
- Institut für Physikalische Chemie, Westfälische Wilhelms-Universität, Corrensstrasse 28/30, 48149, Münster, Germany
| | - Andreas Heuer
- Institut für Physikalische Chemie, Westfälische Wilhelms-Universität, Corrensstrasse 28/30, 48149, Münster, Germany
| | - Ulrich Hennecke
- Organisch-Chemisches Institut, Westfälische Wilhelms-Universität, Corrensstrasse 40, 48149, Münster, Germany
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33
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Zhou H, Chen D, Bai JK, Sun XL, Li C, Qiao RZ. Effect of ligand sequence-specific modification on DNA hybrid catalysis. Org Biomol Chem 2017; 15:6738-6745. [DOI: 10.1039/c7ob01249g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report a sequence-specific catalytic ligand as a chemical modification strategy to achieve DNA-based asymmetric reactions with sequence-dependent enantioselectivity.
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Affiliation(s)
- H. Zhou
- State Key Laboratory of Chemical Resource Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- P. R. China
| | - D. Chen
- State Key Laboratory of Chemical Resource Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- P. R. China
| | - J. K. Bai
- State Key Laboratory of Chemical Resource Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- P. R. China
| | - X. L. Sun
- State Key Laboratory of Chemical Resource Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- P. R. China
| | - C. Li
- State Key Laboratory of Chemical Resource Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- P. R. China
| | - R. Z. Qiao
- State Key Laboratory of Chemical Resource Engineering
- Beijing University of Chemical Technology
- Beijing 100029
- P. R. China
- State Key Laboratory of Natural and Biomimetic Drugs School of Pharmaceutical Sciences
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34
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Duchemin N, Heath-Apostolopoulos I, Smietana M, Arseniyadis S. A decade of DNA-hybrid catalysis: from innovation to comprehension. Org Biomol Chem 2017; 15:7072-7087. [DOI: 10.1039/c7ob00176b] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
Since the pioneering work of Roelfes and Feringa in the field of DNA-based asymmetric catalysis, the unique chirality of oligonucleotides has allowed the development of a variety of asymmetric synthetic transformations. This review offers a complete overview of the field.
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Affiliation(s)
- Nicolas Duchemin
- Queen Mary University of London
- School of Biological and Chemical Sciences
- London
- UK
| | | | - Michael Smietana
- Institut des Biomolécules Max Mousseron
- UMR 5247 CNRS
- Université de Montpellier
- 34095 Montpellier
- France
| | - Stellios Arseniyadis
- Queen Mary University of London
- School of Biological and Chemical Sciences
- London
- UK
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35
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García-Fernández A, Megens RP, Villarino L, Roelfes G. DNA-Accelerated Copper Catalysis of Friedel–Crafts Conjugate Addition/Enantioselective Protonation Reactions in Water. J Am Chem Soc 2016; 138:16308-16314. [DOI: 10.1021/jacs.6b08295] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]
Affiliation(s)
- Almudena García-Fernández
- Stratingh Institute
for Chemistry, University of Groningen, Nijenborgh 4, 9747
AG, Groningen, The Netherlands
| | - Rik P. Megens
- Stratingh Institute
for Chemistry, University of Groningen, Nijenborgh 4, 9747
AG, Groningen, The Netherlands
| | - Lara Villarino
- Stratingh Institute
for Chemistry, University of Groningen, Nijenborgh 4, 9747
AG, Groningen, The Netherlands
| | - Gerard Roelfes
- Stratingh Institute
for Chemistry, University of Groningen, Nijenborgh 4, 9747
AG, Groningen, The Netherlands
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36
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Rioz-Martínez A, Oelerich J, Ségaud N, Roelfes G. DNA-Accelerated Catalysis of Carbene-Transfer Reactions by a DNA/Cationic Iron Porphyrin Hybrid. Angew Chem Int Ed Engl 2016; 55:14136-14140. [PMID: 27730731 PMCID: PMC5113691 DOI: 10.1002/anie.201608121] [Citation(s) in RCA: 53] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2016] [Indexed: 11/16/2022]
Abstract
A novel DNA-based hybrid catalyst comprised of salmon testes DNA and an iron(III) complex of a cationic meso-tetrakis(N-alkylpyridyl)porphyrin was developed. When the N-methyl substituents were placed at the ortho position with respect to the porphyrin ring, high reactivity in catalytic carbene-transfer reactions was observed under mild conditions, as demonstrated in the catalytic enantioselective cyclopropanation of styrene derivatives with ethyl diazoacetate (EDA) as the carbene precursor. A remarkable feature of this catalytic system is the large DNA-induced rate acceleration observed in this reaction and the related dimerization of EDA. It is proposed that high effective molarity of all components of the reaction in or near the DNA is one of the key contributors to this unique reactivity. This study demonstrates that the concept of DNA-based asymmetric catalysis can be expanded into the realm of organometallic chemistry.
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Affiliation(s)
- Ana Rioz-Martínez
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Jens Oelerich
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Nathalie Ségaud
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands
| | - Gerard Roelfes
- Stratingh Institute for Chemistry, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.
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37
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Han GM, Jia ZZ, Zhu YJ, Jiao JJ, Kong DM, Feng XZ. Biostable L-DNA-Templated Aptamer-Silver Nanoclusters for Cell-Type-Specific Imaging at Physiological Temperature. Anal Chem 2016; 88:10800-10804. [PMID: 27797508 DOI: 10.1021/acs.analchem.6b02871] [Citation(s) in RCA: 46] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
The high susceptibility of the natural D-conformation of DNA (D-DNA) to nucleases greatly limits the application of DNA-templated silver nanoclusters (Ag NCs) in biological matrixes. Here we demonstrate that the L-conformation of DNA (L-DNA), the enantiomer of D-DNA, can also be used for the preparation of aptamer-Ag NCs. The extraordinary resistance of L-DNA to nuclease digestion confers much higher biostability to these NCs than those templated by D-DNA, thus making cell-type-specific imaging possible at physiological temperatures, using at least 100-times lower Ag NC concentration than reported D-DNA-templated ones. The L-DNA-templated metal NC probes with enhanced biostability might promote the applications of metal nanocluster probes in complex biological systems.
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Affiliation(s)
- Gui-Mei Han
- State Key Laboratory of Medicinal Chemical Biology, Nankai University , Tianjin, 300071, P R China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, Nankai University , Tianjin, 300071, P R China
| | - Zhen-Zhen Jia
- State Key Laboratory of Medicinal Chemical Biology, Nankai University , Tianjin, 300071, P R China.,The Key Laboratory of Bioactive Materials, Ministry of Education, College of Life Science, Nankai University , Tianjin, 300071, P R China
| | - Yan-Jun Zhu
- State Key Laboratory of Medicinal Chemical Biology, Nankai University , Tianjin, 300071, P R China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, Nankai University , Tianjin, 300071, P R China
| | - Jia-Jia Jiao
- State Key Laboratory of Medicinal Chemical Biology, Nankai University , Tianjin, 300071, P R China.,The Key Laboratory of Bioactive Materials, Ministry of Education, College of Life Science, Nankai University , Tianjin, 300071, P R China
| | - De-Ming Kong
- State Key Laboratory of Medicinal Chemical Biology, Nankai University , Tianjin, 300071, P R China.,Collaborative Innovation Center of Chemical Science and Engineering (Tianjin), Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Sciences, Nankai University , Tianjin, 300071, P R China
| | - Xi-Zeng Feng
- State Key Laboratory of Medicinal Chemical Biology, Nankai University , Tianjin, 300071, P R China.,The Key Laboratory of Bioactive Materials, Ministry of Education, College of Life Science, Nankai University , Tianjin, 300071, P R China
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38
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Yashima E, Ousaka N, Taura D, Shimomura K, Ikai T, Maeda K. Supramolecular Helical Systems: Helical Assemblies of Small Molecules, Foldamers, and Polymers with Chiral Amplification and Their Functions. Chem Rev 2016; 116:13752-13990. [PMID: 27754649 DOI: 10.1021/acs.chemrev.6b00354] [Citation(s) in RCA: 1198] [Impact Index Per Article: 149.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
In this review, we describe the recent advances in supramolecular helical assemblies formed from chiral and achiral small molecules, oligomers (foldamers), and helical and nonhelical polymers from the viewpoints of their formations with unique chiral phenomena, such as amplification of chirality during the dynamic helically assembled processes, properties, and specific functionalities, some of which have not been observed in or achieved by biological systems. In addition, a brief historical overview of the helical assemblies of small molecules and remarkable progress in the synthesis of single-stranded and multistranded helical foldamers and polymers, their properties, structures, and functions, mainly since 2009, will also be described.
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Affiliation(s)
- Eiji Yashima
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Naoki Ousaka
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Daisuke Taura
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Kouhei Shimomura
- Department of Molecular Design and Engineering, Graduate School of Engineering, Nagoya University , Chikusa-ku, Nagoya 464-8603, Japan
| | - Tomoyuki Ikai
- Graduate School of Natural Science and Technology, Kanazawa University , Kakuma-machi, Kanazawa 920-1192, Japan
| | - Katsuhiro Maeda
- Graduate School of Natural Science and Technology, Kanazawa University , Kakuma-machi, Kanazawa 920-1192, Japan
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39
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Rioz-Martínez A, Oelerich J, Ségaud N, Roelfes G. DNA-Accelerated Catalysis of Carbene-Transfer Reactions by a DNA/Cationic Iron Porphyrin Hybrid. Angew Chem Int Ed Engl 2016. [DOI: 10.1002/ange.201608121] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Ana Rioz-Martínez
- Stratingh Institute for Chemistry; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Jens Oelerich
- Stratingh Institute for Chemistry; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Nathalie Ségaud
- Stratingh Institute for Chemistry; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
| | - Gerard Roelfes
- Stratingh Institute for Chemistry; University of Groningen; Nijenborgh 4 9747 AG Groningen The Netherlands
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40
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Amirbekyan K, Duchemin N, Benedetti E, Joseph R, Colon A, Markarian SA, Bethge L, Vonhoff S, Klussmann S, Cossy J, Vasseur JJ, Arseniyadis S, Smietana M. Design, Synthesis, and Binding Affinity Evaluation of Hoechst 33258 Derivatives for the Development of Sequence-Specific DNA-Based Asymmetric Catalysts. ACS Catal 2016. [DOI: 10.1021/acscatal.6b00495] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Karen Amirbekyan
- Institut
des Biomolécules Max Mousseron, UMR 5247 CNRS, Université de Montpellier, ENSCM Place Eugène Bataillon, 34095 Montpellier, France
- Department
of Physical Chemistry, Yerevan State University, 1 Alex Manoogian, Yerevan 0025, Armenia
| | - Nicolas Duchemin
- Laboratoire
de Chimie Organique, Institute of Chemistry, Biology and Innovation
(CBI) - ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University, 10 rue Vauquelin, 75231 CEDEX 05 Paris, France
| | - Erica Benedetti
- Laboratoire
de Chimie Organique, Institute of Chemistry, Biology and Innovation
(CBI) - ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University, 10 rue Vauquelin, 75231 CEDEX 05 Paris, France
| | - Rinah Joseph
- Laboratoire
de Chimie Organique, Institute of Chemistry, Biology and Innovation
(CBI) - ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University, 10 rue Vauquelin, 75231 CEDEX 05 Paris, France
| | - Aude Colon
- Laboratoire
de Chimie Organique, Institute of Chemistry, Biology and Innovation
(CBI) - ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University, 10 rue Vauquelin, 75231 CEDEX 05 Paris, France
| | - Shiraz A. Markarian
- Department
of Physical Chemistry, Yerevan State University, 1 Alex Manoogian, Yerevan 0025, Armenia
| | - Lucas Bethge
- NOXXON Pharma AG, Max-Dohrn-Strasse 8-10, 10589 Berlin, Germany
| | - Stephan Vonhoff
- NOXXON Pharma AG, Max-Dohrn-Strasse 8-10, 10589 Berlin, Germany
| | - Sven Klussmann
- NOXXON Pharma AG, Max-Dohrn-Strasse 8-10, 10589 Berlin, Germany
| | - Janine Cossy
- Laboratoire
de Chimie Organique, Institute of Chemistry, Biology and Innovation
(CBI) - ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University, 10 rue Vauquelin, 75231 CEDEX 05 Paris, France
| | - Jean-Jacques Vasseur
- Institut
des Biomolécules Max Mousseron, UMR 5247 CNRS, Université de Montpellier, ENSCM Place Eugène Bataillon, 34095 Montpellier, France
| | - Stellios Arseniyadis
- Laboratoire
de Chimie Organique, Institute of Chemistry, Biology and Innovation
(CBI) - ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University, 10 rue Vauquelin, 75231 CEDEX 05 Paris, France
- School
of Biological and Chemical Sciences, Queen Mary University of London, Joseph Priestley Building, Mile End Road, London E1 4NS, United Kingdom
| | - Michael Smietana
- Institut
des Biomolécules Max Mousseron, UMR 5247 CNRS, Université de Montpellier, ENSCM Place Eugène Bataillon, 34095 Montpellier, France
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41
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42
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Duchemin N, Benedetti E, Bethge L, Vonhoff S, Klussmann S, Vasseur JJ, Cossy J, Smietana M, Arseniyadis S. Expanding biohybrid-mediated asymmetric catalysis into the realm of RNA. Chem Commun (Camb) 2016; 52:8604-7. [DOI: 10.1039/c6cc03540j] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report here the first example of an RNA-based catalyst involving a catalytically active metal complex interacting in a non-covalent fashion with short RNA sequences.
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Affiliation(s)
- Nicolas Duchemin
- Laboratoire de Chimie Organique
- Institute of Chemistry
- Biology and Innovation (CBI) – ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University
- 75231 Paris Cedex 05
- France
| | - Erica Benedetti
- Laboratoire de Chimie Organique
- Institute of Chemistry
- Biology and Innovation (CBI) – ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University
- 75231 Paris Cedex 05
- France
| | | | | | | | - Jean-Jacques Vasseur
- Institut des Biomolécules Max Mousseron
- UMR 5247 CNRS
- Université de Montpellier
- ENSCM Place Eugène Bataillon
- 34095 Montpellier
| | - Janine Cossy
- Laboratoire de Chimie Organique
- Institute of Chemistry
- Biology and Innovation (CBI) – ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University
- 75231 Paris Cedex 05
- France
| | - Michael Smietana
- Institut des Biomolécules Max Mousseron
- UMR 5247 CNRS
- Université de Montpellier
- ENSCM Place Eugène Bataillon
- 34095 Montpellier
| | - Stellios Arseniyadis
- Laboratoire de Chimie Organique
- Institute of Chemistry
- Biology and Innovation (CBI) – ESPCI ParisTech/CNRS (UMR8231)/PSL* Research University
- 75231 Paris Cedex 05
- France
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43
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Draksharapu A, Boersma AJ, Leising M, Meetsma A, Browne WR, Roelfes G. Binding of copper(II) polypyridyl complexes to DNA and consequences for DNA-based asymmetric catalysis. Dalton Trans 2015; 44:3647-55. [PMID: 25476597 DOI: 10.1039/c4dt02733g] [Citation(s) in RCA: 48] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The interaction between salmon testes DNA (st-DNA) and a series of Cu(II) polypyridyl complexes, i.e. [Cu(dmbpy)(NO3)2] (1) (dmbpy = 4,4'-dimethyl-2,2'-bipyridine), [Cu(bpy)(NO3)2] (2) (bpy = 2,2'-bipyridine), [Cu(phen)(NO3)2] (3) (phen = phenanthroline), [Cu(terpy)(NO3)2]·H2O (4) (terpy = 2,2':6',2″-terpyridine), [Cu(dpq)(NO3)2] (5) (dpq = dipyrido-[3,2-d:2',3'-f]-quinoxaline) and [Cu(dppz)(NO3)2] (6) (dppz = dipyrido[3,2-a:2',3'-c]phenazine) was studied by UV/Vis absorption, Circular Dichroism, Linear Dichroism, EPR, Raman and (UV and vis) resonance Raman spectroscopies and viscometry. These complexes catalyse enantioselective C-C bond forming reactions in water with DNA as the source of chirality. Complex 1 crystallizes as an inorganic polymer with nitrate ligands bridging the copper ions, which adopt essentially a distorted square pyramidal structure with a fifth bridging nitrate ligand at the axial position. Raman spectroscopy indicates that in solution the nitrate ligands in 1, 2, 3 and 4 are displaced by solvent (H2O). For complex 1, multiple supramolecular species are observed in the presence of st-DNA in contrast to the other complexes, which appear to interact relatively uniformly as a single species predominantly, when st-DNA is present. Overall the data suggest that complexes 1 and 2 engage primarily through groove binding with st-DNA while 5 and 6 undergo intercalation. For complexes 3 and 4 the data indicates that both groove binding and intercalation takes place, albeit primarily intercalation. Although it is tempting to conclude that the groove binders give highest ee and rate acceleration, it is proposed that the flexibility and dynamics in binding of Cu(II) complexes to DNA are key parameters that determine the outcome of the reaction. These findings provide insight into the complex supramolecular structure of these DNA-based catalysts.
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Affiliation(s)
- Apparao Draksharapu
- Stratingh Institute for Chemistry, Faculty of Mathematics and Natural Sciences, University of Groningen, Nijenborgh 4, 9747 AG, Groningen, The Netherlands.
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44
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Zhang B, Han F, Wang L, Li D, Yang D, Yang X, Yang J, Li X, Zhao D, Wang R. Catalytic Asymmetric Michael Reaction of 5H-Oxazol-4-Ones with α,β-Unsaturated Acyl Imidazoles. Chemistry 2015; 21:17234-8. [DOI: 10.1002/chem.201503105] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2015] [Revised: 10/02/2015] [Indexed: 12/24/2022]
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45
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Drissi-Amraoui S, Morin MST, Crévisy C, Baslé O, Marcia de Figueiredo R, Mauduit M, Campagne JM. Copper-Catalyzed Asymmetric Conjugate Addition of Dimethylzinc to Acyl-N-methylimidazole Michael Acceptors: a Powerful Synthetic Platform. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201506189] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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46
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Drissi‐Amraoui S, Morin MST, Crévisy C, Baslé O, Marcia de Figueiredo R, Mauduit M, Campagne J. Copper‐Catalyzed Asymmetric Conjugate Addition of Dimethylzinc to Acyl‐
N
‐methylimidazole Michael Acceptors: a Powerful Synthetic Platform. Angew Chem Int Ed Engl 2015; 54:11830-4. [DOI: 10.1002/anie.201506189] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2015] [Indexed: 12/30/2022]
Affiliation(s)
- Sammy Drissi‐Amraoui
- Institut Charles Gerhardt Montpellier, UMR 5253 CNRS‐UM‐ENSCM, Ecole Nationale Supérieure de Chimie, 8 Rue de l'Ecole Normale, 34296 Montpellier Cedex 5 (France)
| | - Marie S. T. Morin
- Ecole Nationale Supérieure de Chimie de Rennes, UMR CNRS 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7 (France)
| | - Christophe Crévisy
- Ecole Nationale Supérieure de Chimie de Rennes, UMR CNRS 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7 (France)
| | - Olivier Baslé
- Ecole Nationale Supérieure de Chimie de Rennes, UMR CNRS 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7 (France)
| | - Renata Marcia de Figueiredo
- Institut Charles Gerhardt Montpellier, UMR 5253 CNRS‐UM‐ENSCM, Ecole Nationale Supérieure de Chimie, 8 Rue de l'Ecole Normale, 34296 Montpellier Cedex 5 (France)
| | - Marc Mauduit
- Ecole Nationale Supérieure de Chimie de Rennes, UMR CNRS 6226, 11 Allée de Beaulieu, CS 50837, 35708 Rennes Cedex 7 (France)
| | - Jean‐Marc Campagne
- Institut Charles Gerhardt Montpellier, UMR 5253 CNRS‐UM‐ENSCM, Ecole Nationale Supérieure de Chimie, 8 Rue de l'Ecole Normale, 34296 Montpellier Cedex 5 (France)
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47
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Dey S, Jäschke A. Tuning the stereoselectivity of a DNA-catalyzed michael addition through covalent modification. Angew Chem Int Ed Engl 2015. [PMID: 26224256 DOI: 10.1002/anie.201503838] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Abstract
Complexes of G-quadruplex DNA and Cu(II) ions have previously been applied as catalysts in asymmetric reactions, but the largely unspecific and noncovalent nature of the interaction has impeded understanding of the structural basis of catalysis. To better control the formation of a catalytically competent species, DNA quadruplexes were derivatized with linker-bpy-Cu(II) complexes in a site-specific manner and applied in asymmetric aqueous Michael additions. These modified quadruplexes exhibited high rate acceleration and stereoselectivity. Different factors were found to be important for the catalytic performance of the modified G-quadruplexes, among them, the position of modification, the topology of the quadruplex, the nature of the ligand, and the length of the linker between the ligand and DNA. Moving the same ligand by just two nucleotides inverted the stereochemical outcome: quadruplexes modified at position 10 formed the (-)-enantiomer with up to 92 % ee, while DNA derivatized at position 12 formed the (+)-enantiomer with up to 75 % ee. This stereopreference was maintained when applied to structurally different Michael acceptors. This work demonstrates a new and simple way to tune the stereoselectivity in DNA-based asymmetric catalysis.
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Affiliation(s)
- Surjendu Dey
- Institut für Pharmazie und Molekulare Biotechnologie, Universität Heidelberg, 69120 Heidelberg (Germany) http://www.jaeschke.uni-hd.de
| | - Andres Jäschke
- Institut für Pharmazie und Molekulare Biotechnologie, Universität Heidelberg, 69120 Heidelberg (Germany) http://www.jaeschke.uni-hd.de.
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48
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Dey S, Jäschke A. Modulation der Stereoselektivität einer DNA-katalysierten Michael-Addition durch kovalente Modifizierung. Angew Chem Int Ed Engl 2015. [DOI: 10.1002/ange.201503838] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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49
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Affiliation(s)
- Minghua Liu
- Beijing National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - Li Zhang
- Beijing National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
| | - Tianyu Wang
- Beijing National Laboratory for Molecular Science (BNLMS), CAS Key Laboratory of Colloid, Interface and Chemical Thermodynamics, Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, People's Republic of China
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50
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Park S, Okamura I, Sakashita S, Yum JH, Acharya C, Gao L, Sugiyama H. Development of DNA Metalloenzymes Using a Rational Design Approach and Application in the Asymmetric Diels–Alder Reaction. ACS Catal 2015. [DOI: 10.1021/acscatal.5b01046] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Soyoung Park
- Department of Chemistry,
Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Izumi Okamura
- Department of Chemistry,
Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Sohei Sakashita
- Department of Chemistry,
Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
| | - Ji Hye Yum
- Department of Chemistry, Kyungpook National University, 80 Daehakro, Bukgu, Daegu 702-701, Korea
| | - Chiranjit Acharya
- Department of Chemistry, CSIR-Indian Institute of Chemical Biology, Raja S. C. Mullick Road, Jadavpur, Kolkata 700-032, India
| | - Li Gao
- Department für Chemie, Ludwig-Maximilians-Universität, Butenandtstrasse 5-13, 81377 München, Germany
| | - Hiroshi Sugiyama
- Department of Chemistry,
Graduate School of Science, Kyoto University, Kitashirakawa-oiwakecho, Sakyo-ku, Kyoto 606-8502, Japan
- Institute for Integrated Cell-Material
Sciences (iCeMS), Kyoto University, Yoshida-ushinomiyacho, Sakyo-ku, Kyoto 606-8501, Japan
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