1
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Syntrivanis L, Tiefenbacher K. Reactivity Inside Molecular Flasks: Acceleration Modes and Types of Selectivity Obtainable. Angew Chem Int Ed Engl 2024; 63:e202412622. [PMID: 39295476 PMCID: PMC11586709 DOI: 10.1002/anie.202412622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/04/2024] [Revised: 08/15/2024] [Accepted: 08/15/2024] [Indexed: 09/21/2024]
Abstract
There is increasing interest in the discovery and application of molecular flasks-supramolecular host structures capable of catalyzing organic reactions. Reminiscent of enzymes due to possessing a host cavity akin to an active site, molecular flasks can exhibit complex catalytic mechanisms and in many cases provide selectivity not achievable in bulk solvent. In this Review, we aim to organize the increasingly diverse examples through a two-part structure. In part one, we provide an overview of the different acceleration modes that operate within molecular flasks, while in part two we showcase, through selected examples, the different types of selectivity that are obtainable through the use of molecular flasks. Particular attention is given to examples that are relevant to current challenges in synthetic organic chemistry. We believe that this structure makes the field more approachable and thus will stimulate the development of novel applications of molecular flasks.
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Affiliation(s)
| | - Konrad Tiefenbacher
- Department of ChemistryUniversity of BaselBaselSwitzerland
- Department of Biosystems Science and EngineeringETHZurichBaselSwitzerland
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2
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Mandal S, Sarkar P, Ghosh P. A macrocycle-based new organometallic nano-vessel towards sustainable C2-selective arylation of free indole in water. Org Biomol Chem 2024; 22:7438-7447. [PMID: 39188153 DOI: 10.1039/d4ob00886c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/28/2024]
Abstract
C2-selectivity of unsubstituted indole over facile C3-substitution is attempted by utilizing the π-cavity of a nano-vessel made up of a palladium complex of an amino-ether heteroditopic macrocycle. Functional group tolerance (cyano, nitro, halo, ester, etc.), a broad substrate scope and outstanding selectivities with excellent yields (80-93%) of the desired products have been achieved in 12 h by maintaining all sustainable conditions like aqueous medium, recyclable catalyst, one-pot reaction, no external additives, mild temperature, etc. Interestingly, we observed that electron-deficient indole derivatives underwent the present transformation with marginally superior reactivity in comparison with electron-rich indole derivatives. This approach establishes a green pathway for selective C-C coupling employing a π-cavitand as a nano-reactor.
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Affiliation(s)
- Subham Mandal
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S.C. Mullick Road, Kolkata 700032, India.
| | - Piyali Sarkar
- Institute of Health Sciences, Presidency University, Second Campus, Plot No. DG/02/02, Premises No. 14-0358, Action Area-ID, New Town, Kolkata 700156, West Bengal, India
| | - Pradyut Ghosh
- School of Chemical Sciences, Indian Association for the Cultivation of Science, 2A & 2B Raja S.C. Mullick Road, Kolkata 700032, India.
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3
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Kumar R, Maurya V, Avinash A, Appayee C. Nonsilyl Bicyclic Secondary Amine Catalysts for the Asymmetric Transfer Hydrogenation of α,β-Unsaturated Aldehydes. J Org Chem 2024; 89:8586-8600. [PMID: 38836633 DOI: 10.1021/acs.joc.4c00523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/06/2024]
Abstract
The first chiral synthesis of nonsilyl bicyclic secondary amine organocatalysts and their application to the asymmetric transfer hydrogenation of α,β-unsaturated aldehydes are disclosed. A lower catalytic loading (5 mol %) is demonstrated for the reduction of a wide range of α,β-unsaturated aldehydes (up to 97% yield and up to 99% ee). The application of this scalable methodology is showcased for the asymmetric synthesis of bioactive molecules such as phenoxanol, citronellol, ramelteon, and terikalant.
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Affiliation(s)
- Rohtash Kumar
- Department of Chemistry, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat 382055, India
| | - Vidyasagar Maurya
- Department of Chemistry, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat 382055, India
| | - Avinash Avinash
- Department of Chemistry, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat 382055, India
| | - Chandrakumar Appayee
- Department of Chemistry, Indian Institute of Technology Gandhinagar, Palaj, Gandhinagar, Gujarat 382055, India
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4
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Ferrino G, De Rosa M, Della Sala P, Gaeta C, Talotta C, Soriente A, Cao Z, Maity B, Cavallo L, Neri P. The Resorcinarene Hexameric Capsule as a Supramolecular Photoacid to Trigger Olefin Hydroarylation in Confined Space. Chemistry 2024; 30:e202303678. [PMID: 38373184 DOI: 10.1002/chem.202303678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 02/07/2024] [Accepted: 02/19/2024] [Indexed: 02/21/2024]
Abstract
The self-assembled resorcinarene capsule C6 shows remarkable photoacidity upon light irradiation, which is here exploited to catalyze olefin hydroarylation reactions in confined space. An experimental pKa* value range of -3.3--2.8 was estimated for the photo-excited hexameric capsule C6*, and consequently an increase in acidity of 8.8 log units was observed with respect to its ground state (pKa=5.5-6.0). This makes the hexameric capsule the first example of a self-assembled supramolecular photoacid. The photoacid C6* can catalyze hydroarylation reaction of olefins with aromatic substrates inside its cavity, while no reaction occurred between them in the absence of irradiation and/or capsule. DFT calculations corroborated a mechanism in which the photoacidity of C6* plays a crucial role in the protonation step of the aromatic substrate. A further proton transfer to olefin with a concomitant C-C bond formation and a final deprotonation step lead to product releasing.
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Affiliation(s)
- Giuseppina Ferrino
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Margherita De Rosa
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Paolo Della Sala
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Carmen Talotta
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
| | - Zhen Cao
- King Abdullah University of Science and Technology (KAUST), KAUST Catalysis Center, (KCC), Physical Sciences and Engineering Division, Tuwal, 23955-6900, Saudi Arabia
| | - Bholanath Maity
- King Abdullah University of Science and Technology (KAUST), KAUST Catalysis Center, (KCC), Physical Sciences and Engineering Division, Tuwal, 23955-6900, Saudi Arabia
| | - Luigi Cavallo
- King Abdullah University of Science and Technology (KAUST), KAUST Catalysis Center, (KCC), Physical Sciences and Engineering Division, Tuwal, 23955-6900, Saudi Arabia
| | - Placido Neri
- Laboratory of Supramolecular Chemistry Dipartimento di Chimica e Biologia "A. Zambelli", Università degli Studi di Salerno, Via Giovanni Paolo II 132, I-84084, Fisciano (Salerno), Italy
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5
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da Camara B, Woods CZ, Sharma K, Wu HT, Farooqi NS, Chen C, Julian RR, Vander Griend DA, Hooley RJ. Catalytic Inhibition of Base-Mediated Reactivity by a Self-Assembled Metal-Ligand Host. Chemistry 2023; 29:e202302499. [PMID: 37584901 DOI: 10.1002/chem.202302499] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 08/15/2023] [Accepted: 08/16/2023] [Indexed: 08/17/2023]
Abstract
Spacious M4 L6 tetrahedra can act as catalytic inhibitors for base-mediated reactions. Upon adding only 5 % of a self-assembled Fe4 L6 cage complex, the conversion of the conjugate addition between ethylcyanoacetate and β-nitrostyrene catalyzed by proton sponge can be reduced from 83 % after 75 mins at ambient temperature to <1 % under identical conditions. The mechanism of the catalytic inhibition is unusual: the octacationic Fe4 L6 cage increases the acidity of exogenous water in the acetonitrile reaction solvent by favorably binding the conjugate acid of the basic catalyst. The inhibition only occurs for Fe4 L6 hosts with spacious internal cavities: minimal inhibition is seen with smaller tetrahedra or Fe2 L3 helicates. The surprising tendency of the cationic cage to preferentially bind protonated, cationic ammonium guests is quantified via the comprehensive modeling of spectrophotometric titration datasets.
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Affiliation(s)
- Bryce da Camara
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
| | - Connor Z Woods
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
| | - Komal Sharma
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
| | - Hoi-Ting Wu
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
| | - Naira S Farooqi
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
| | - Changwei Chen
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
| | - Ryan R Julian
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
| | | | - Richard J Hooley
- Department of Chemistry and the UCR Center for Catalysis, University of California - Riverside, Riverside, CA 92521, USA
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6
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Wei J, Zhao L, Zhang Y, Han G, He C, Wang C, Duan C. Enzyme Grafting with a Cofactor-Decorated Metal-Organic Capsule for Solar-to-Chemical Conversion. J Am Chem Soc 2023; 145:6719-6729. [PMID: 36916689 DOI: 10.1021/jacs.2c12636] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/16/2023]
Abstract
Semi-artificial approaches to solar-to-chemical conversion can achieve chemical transformations that are beyond the capability of natural enzymes, but face marked challenges to facilitate in vivo cascades, due to their inevitable need for cofactor shuttling and regeneration. Here, we report on an enzyme grafting strategy to build a metal-organic capsule-docking artificial enzyme (metal-organic-enzyme, MOE) that comprised the self-assembly of a cofactor-decorated capsule and the supramolecular enzyme-recognition features between the enzyme scaffold and the capsule to bypass cofactor shuttling and regeneration. The incorporated NADH mimics within the metal-organic capsule interacted with the imine intermediate that formed from the condensation of the amines and the dehydrogenation of alcohol substrates in the microenvironment to form complexes within the capsule and subsequently served as an in situ-generated photoresponsive cofactor. Upon illumination, the photoresponsive cofactor facilitates efficient proton/electron transport between the inner space (supramolecular hydrogenation) and outer space (enzymatic dehydrogenation) of the capsule to dehydrogenize the alcohols and hydrogenize the imine intermediates, respectively, circumventing the conventionally complex multistep cofactor shuttling and regeneration. The semi-artificial enzyme endows the conversion of diverse types of alcohol to amine products in both aqueous/organic solutions and Escherichia coli with high efficiency, offering a wide range of opportunities for sustainable and environmentally friendly biomanufacturing of commodity and fine chemicals.
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Affiliation(s)
- Jianwei Wei
- State Key Laboratory of Fine Chemicals, Frontiers Science Center for Smart Materials Oriented Chemical Engineering, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Liang Zhao
- State Key Laboratory of Fine Chemicals, Frontiers Science Center for Smart Materials Oriented Chemical Engineering, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Yu Zhang
- State Key Laboratory of Fine Chemicals, Frontiers Science Center for Smart Materials Oriented Chemical Engineering, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Gang Han
- Department of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States
| | - Cheng He
- State Key Laboratory of Fine Chemicals, Frontiers Science Center for Smart Materials Oriented Chemical Engineering, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Chong Wang
- State Key Laboratory of Fine Chemicals, Frontiers Science Center for Smart Materials Oriented Chemical Engineering, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
| | - Chunying Duan
- State Key Laboratory of Fine Chemicals, Frontiers Science Center for Smart Materials Oriented Chemical Engineering, Zhang Dayu School of Chemistry, Dalian University of Technology, Dalian 116024, P. R. China
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7
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Liu Y, Liao SH, Dai WT, Bai Q, Lu S, Wang H, Li X, Zhang Z, Wang P, Lu W, Zhang Q. Controlled Construction of Heteroleptic [Pd 2 (L A ) 2 (L B )(L C )] 4+ Cages: A Facile Approach for Site-Selective endo-Functionalization of Supramolecular Cavities. Angew Chem Int Ed Engl 2023; 62:e202217215. [PMID: 36495225 DOI: 10.1002/anie.202217215] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/22/2022] [Revised: 12/08/2022] [Accepted: 12/09/2022] [Indexed: 12/14/2022]
Abstract
Construction of supramolecular structures with internal functionalities is a promising approach to build enzyme-like cavities. The endo-functionalized [Pd12 L24 ] and [Pd2 L4 ] coordination cages represent the most successful systems in this regard. However, these systems mainly contain one type of endo-moiety. We herein provide a solution for the controlled endo-functionalization of [Pd2 L4 ] cages. Site-selective introduction of the endo-functional group was achieved through the formation of heteroleptic [Pd2 (LA )2 (LB )(LC )] cages. Using two orthogonal steric control elements is the key for the selective formation of the hetero-assemblies. We demonstrated the construction of two hetero-cages with a single internal functional group as well as a hetero-cage with two distinct endohedral functionalities. The endo-functionalized hetero-cages bound sulfonate guests with fast-exchange dynamics. This strategy provides a new solution for the controlled endo-functionalization of supramolecular cavities.
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Affiliation(s)
- Yan Liu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu, 610064, P. R. China
| | - Shou-Heng Liao
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu, 610064, P. R. China
| | - Wen-Tao Dai
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu, 610064, P. R. China
| | - Qixia Bai
- Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou University, Guangzhou, 510006, P. R. China
| | - Shuai Lu
- College of Chemistry and Environmental Engineering, Shenzhen University, 3688 Nanhai Ave., Experimental Building, P112, Shenzhen, Guangdong 518060, P. R. China
| | - Heng Wang
- College of Chemistry and Environmental Engineering, Shenzhen University, 3688 Nanhai Ave., Experimental Building, P112, Shenzhen, Guangdong 518060, P. R. China
| | - Xiaopeng Li
- College of Chemistry and Environmental Engineering, Shenzhen University, 3688 Nanhai Ave., Experimental Building, P112, Shenzhen, Guangdong 518060, P. R. China
| | - Zhe Zhang
- Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou University, Guangzhou, 510006, P. R. China
| | - Pingshan Wang
- Institute of Environmental Research at Greater Bay Area, Key Laboratory for Water Quality and Conservation of the Pearl River Delta, Ministry of Education, Guangzhou University, Guangzhou, 510006, P. R. China
| | - Wei Lu
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu, 610064, P. R. China
| | - Qi Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of Education, College of Chemistry, Sichuan University, 29 Wangjiang Road, Chengdu, 610064, P. R. China
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8
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Shrestha KK, Hilyard MA, Alahakoon I, Young MC. Combining iminium and supramolecular catalysis for the [4 + 2] cycloaddition of E-cinnamaldehydes. Org Biomol Chem 2022; 20:6646-6653. [PMID: 35938223 PMCID: PMC9462845 DOI: 10.1039/d2ob01171a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Herein we describe a method for combining supramolecular catalysis with imininum-based organocatalysis in the Diels-Alder cycloaddition reaction. Both supramolecular host and L-proline are required for the reaction to occur, implying that encapsulation of the substrates and co-catalyst are necessary for the reaction to occur. We explore the substrate scope for a variety of E-cinnamaldehydes and dienes. Finally, we probe the supramolecular assembly processes responsible for the observed catalysis using NMR spectroscopic methods.
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Affiliation(s)
- Kendra K Shrestha
- Department of Chemistry & Biochemistry, School of Green Chemistry and Engineering, The University of Toledo, 2801 W. Bancroft St., Mailstop 602, Toledo, OH 43606, USA.
| | - Michael A Hilyard
- Department of Chemistry & Biochemistry, School of Green Chemistry and Engineering, The University of Toledo, 2801 W. Bancroft St., Mailstop 602, Toledo, OH 43606, USA.
| | - Indunil Alahakoon
- Department of Chemistry & Biochemistry, School of Green Chemistry and Engineering, The University of Toledo, 2801 W. Bancroft St., Mailstop 602, Toledo, OH 43606, USA.
| | - Michael C Young
- Department of Chemistry & Biochemistry, School of Green Chemistry and Engineering, The University of Toledo, 2801 W. Bancroft St., Mailstop 602, Toledo, OH 43606, USA.
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9
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Hkiri S, Steinmetz M, Schurhammer R, Sémeril D. Encapsulated Neutral Ruthenium Catalyst for Substrate‐Selective Oxidation of Alcohols. Chemistry 2022; 28:e202201887. [DOI: 10.1002/chem.202201887] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/19/2022] [Indexed: 11/06/2022]
Affiliation(s)
- Shaima Hkiri
- Synthèse Organométallique et Catalyse, UMR-CNRS 7177-Institut de Chimie de Strasbourg Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
| | - Maxime Steinmetz
- Synthèse Organométallique et Catalyse, UMR-CNRS 7177-Institut de Chimie de Strasbourg Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
| | - Rachel Schurhammer
- Laboratoire de Modélisation et Simulations Moléculaires, UMR-CNRS 7140-Chimie de la Matière Complexe Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
| | - David Sémeril
- Synthèse Organométallique et Catalyse, UMR-CNRS 7177-Institut de Chimie de Strasbourg Université de Strasbourg 4 rue Blaise Pascal 67008 Strasbourg France
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10
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Bierschenk SM, Pan JY, Settineri NS, Warzok U, Bergman RG, Raymond KN, Toste FD. Impact of Host Flexibility on Selectivity in a Supramolecular Host-Catalyzed Enantioselective aza-Darzens Reaction. J Am Chem Soc 2022; 144:11425-11433. [PMID: 35700232 DOI: 10.1021/jacs.2c04182] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
A highly enantioselective aza-Darzens reaction (up to 99% ee) catalyzed by an enantiopure supramolecular host has been discovered. To understand the role of host structure on reaction outcome, nine new gallium(III)-based enantiopure supramolecular assemblies were prepared via substitution of the external chiral amide. Despite the distal nature of the substitution in these catalysts, changes in enantioselectivity (61 to 90% ee) in the aziridine product were observed. The enantioselectivities were correlated to the flexibility of the supramolecular host scaffold as measured by the kinetics of exchange of a model cationic guest. This correlation led to the development of a best-in-class catalyst by substituting the gallium(III)-based host with one based on indium(III), which generated the most flexible and selective catalyst.
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Affiliation(s)
- Stephen M Bierschenk
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.,Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Judy Y Pan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.,Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Nicholas S Settineri
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Ulrike Warzok
- Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Robert G Bergman
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.,Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Kenneth N Raymond
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.,Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - F Dean Toste
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States.,Department of Chemistry, University of California, Berkeley, California 94720, United States
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11
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Sokolova D, Piccini G, Tiefenbacher K. Enantioselective Tail-to-Head Terpene Cyclizations by Optically Active Hexameric Resorcin[4]arene Capsule Derivatives. Angew Chem Int Ed Engl 2022; 61:e202203384. [PMID: 35324038 PMCID: PMC9323437 DOI: 10.1002/anie.202203384] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2022] [Indexed: 01/01/2023]
Abstract
Molecular capsules enable the conversion of substrates inside a closed cavity, mimicking to some extent enzymatic catalysis. Chirality transfer from the molecular capsule onto the encapsulated substrate has been only studied in a few cases. Here we demonstrate that chirality transfer is possible inside a rather large molecular container of approximately 1400 Å3 . Specifically, we present 1) the first examples of optically active hexameric resorcin[4]arene capsules, 2) their ability to enantioselectively catalyze tail-to-head terpene cyclizations, and 3) the surprisingly high sensitivity of enantioselectivity on the structural modifications.
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Affiliation(s)
- Daria Sokolova
- Department of ChemistryUniversity of BaselMattenstrasse 24a4058BaselSwitzerland
| | - GiovanniMaria Piccini
- Facoltà di Informatica, Istituto EuleroUniversità della Svizzera Italiana (USI)LuganoSwitzerland
| | - Konrad Tiefenbacher
- Department of ChemistryUniversity of BaselMattenstrasse 24a4058BaselSwitzerland
- Department of Biosystems Science and EngineeringETH ZurichMattenstrasse 264058BaselSwitzerland
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12
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Saha R, Mondal B, Mukherjee PS. Molecular Cavity for Catalysis and Formation of Metal Nanoparticles for Use in Catalysis. Chem Rev 2022; 122:12244-12307. [PMID: 35438968 DOI: 10.1021/acs.chemrev.1c00811] [Citation(s) in RCA: 96] [Impact Index Per Article: 32.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
The employment of weak intermolecular interactions in supramolecular chemistry offers an alternative approach to project artificial chemical environments like the active sites of enzymes. Discrete molecular architectures with defined shapes and geometries have become a revolutionary field of research in recent years because of their intrinsic porosity and ease of synthesis using dynamic non-covalent/covalent interactions. Several porous molecular cages have been constructed from simple building blocks by self-assembly, which undergoes many self-correction processes to form the final architecture. These supramolecular systems have been developed to demonstrate numerous applications, such as guest stabilization, drug delivery, catalysis, smart materials, and many other related fields. In this respect, catalysis in confined nanospaces using such supramolecular cages has seen significant growth over the years. These porous discrete cages contain suitable apertures for easy intake of substrates and smooth release of products to exhibit exceptional catalytic efficacy. This review highlights recent advancements in catalytic activity influenced by the nanocavities of hydrogen-bonded cages, metal-ligand coordination cages, and dynamic or reversible covalently bonded organic cages in different solvent media. Synthetic strategies for these three types of supramolecular systems are discussed briefly and follow similar and simplistic approaches manifested by simple starting materials and benign conditions. These examples demonstrate the progress of various functionalized molecular cages for specific chemical transformations in aqueous and nonaqueous media. Finally, we discuss the enduring challenges related to porous cage compounds that need to be overcome for further developments in this field of work.
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Affiliation(s)
- Rupak Saha
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore-560 012, India
| | - Bijnaneswar Mondal
- Department of Chemistry, Guru Ghasidas Vishwavidyalaya, Bilaspur-495 009, Chhattisgarh, India
| | - Partha Sarathi Mukherjee
- Department of Inorganic and Physical Chemistry, Indian Institute of Science, Bangalore-560 012, India
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13
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Sokolova D, Piccini G, Tiefenbacher K. Enantioselective Tail‐to‐Head Terpene Cyclizations by Optically Active Hexameric Resorcin[4]arene Capsule Derivatives. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202203384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Daria Sokolova
- University of Basel: Universitat Basel Chemistry SWITZERLAND
| | - GiovanniMaria Piccini
- Università della Svizzera Italiana: Universita della Svizzera Italiana Informatica SWITZERLAND
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14
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Xu N, Su K, El-Sayed ESM, Ju Z, Yuan D. Chiral proline-substituted porous organic cages in asymmetric organocatalysis. Chem Sci 2022; 13:3582-3588. [PMID: 35432868 PMCID: PMC8943855 DOI: 10.1039/d2sc00395c] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Accepted: 03/03/2022] [Indexed: 11/21/2022] Open
Abstract
The efficient preparation of chiral porous organic cages (POCs) with specific functions is challenging, and their application in asymmetric catalysis has not previously been explored. In this work, we have achieved the construction of chiral POCs based on a supramolecular tetraformyl-resorcin[4]arene scaffold with different chiral proline-modified diamine ligands and utilizing dynamic imine chemistry. The incorporation of V-shaped or linear chiral diamines affords the [4 + 8] square prism and [6 + 12] octahedral POCs respectively. The appended chiral proline moieties in such POCs make them highly active supramolecular nanoreactors for asymmetric aldol reactions, delivering up to 92% ee. The spatial distribution of chiral catalytic sites in these two types of POCs greatly affects their catalytic activities and enantioselectivities. This work not only lays a foundation for the asymmetric catalytic application of chiral POCs, but also contributes to our understanding of the catalytic function of biomimetic supramolecular systems.
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Affiliation(s)
- Ning Xu
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences Fuzhou 350002 Fujian China
| | - Kongzhao Su
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences Fuzhou 350002 Fujian China
- University of the Chinese Academy of Sciences Beijing 100049 China
| | - El-Sayed M El-Sayed
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences Fuzhou 350002 Fujian China
- University of the Chinese Academy of Sciences Beijing 100049 China
- Chemical Refining Laboratory, Refining Department, Egyptian Petroleum Research Institute Nasr City 11727 Egypt
| | - Zhanfeng Ju
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences Fuzhou 350002 Fujian China
| | - Daqiang Yuan
- State Key Laboratory of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences Fuzhou 350002 Fujian China
- University of the Chinese Academy of Sciences Beijing 100049 China
- Fujian Science and Technology Innovation Laboratory for Optoelectronic Information of China Fuzhou 350002 Fujian China
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15
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De Rosa M, Gambaro S, Soriente A, Della Sala P, Iuliano V, Talotta C, Gaeta C, Rescifina A, Neri P. Carbocation catalysis in confined space: activation of trityl chloride inside the hexameric resorcinarene capsule. Chem Sci 2022; 13:8618-8625. [PMID: 35974771 PMCID: PMC9337730 DOI: 10.1039/d2sc02901d] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 06/06/2022] [Indexed: 11/21/2022] Open
Abstract
The hexameric resorcinarene capsule is able to promote carbocation catalysis inside its cavity.
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Affiliation(s)
- Margherita De Rosa
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Stefania Gambaro
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Paolo Della Sala
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Veronica Iuliano
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Carmen Talotta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
| | - Antonio Rescifina
- Dipartimento di Scienze del Farmaco e della Salute, Università di Catania, viale Andrea Doria, 6, 95125 Catania, Italy
| | - Placido Neri
- Laboratory of Supramolecular Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084, Fisciano (SALERNO), Italy
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16
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Domb I, Lustosa DM, Milo A. Secondary-sphere modification in proline catalysis: Old friend, new connection. Chem Commun (Camb) 2022; 58:1950-1953. [DOI: 10.1039/d1cc05589e] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this work, we exploit our strategy of in situ secondary-sphere modification of organocatalysts to improve the reactivity and selectivity of amino catalysts. Herein, the carboxylic acid moiety of proline...
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17
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Poole D, Mathew S, Reek JNH. Just Add Water: Modulating the Structure-Derived Acidity of Catalytic Hexameric Resorcinarene Capsules. J Am Chem Soc 2021; 143:16419-16427. [PMID: 34591465 PMCID: PMC8517980 DOI: 10.1021/jacs.1c04924] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Indexed: 12/26/2022]
Abstract
The hexameric undecyl-resorcin[4]arene capsule (C11R6) features eight discrete structural water molecules located at the vertices of its cubic suprastructure. Combining NMR spectroscopy with classical molecular dynamics (MD), we identified and characterized two distinct species of this capsule, C11R6-A and C11R6-B, respectively featuring 8 and 15 water molecules incorporated into their respective hydrogen-bonded networks. Furthermore, we found that the ratio of the C11R6-A and C11R6-B found in solution can be modulated by controlling the water content of the sample. The importance of this supramolecular modulation in C11R6 capsules is highlighted by its ability to perform acid-catalyzed transformations, which is an emergent property arising from the hydrogen bonding within the suprastructure. We show that the conversion of C11R6-A to C11R6-B enhances the catalytic rate of a model Diels-Alder cyclization by 10-fold, demonstrating the cofactor-derived control of a supramolecular catalytic process that emulates natural enzymatic systems.
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Affiliation(s)
- David
A. Poole
- Homogeneous, Supramolecular,
and Bioinspired Catalysis Group, van’t Hoff Institute for Molecular
Science (HIMS), University of Amsterdam
(UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Simon Mathew
- Homogeneous, Supramolecular,
and Bioinspired Catalysis Group, van’t Hoff Institute for Molecular
Science (HIMS), University of Amsterdam
(UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
| | - Joost N. H. Reek
- Homogeneous, Supramolecular,
and Bioinspired Catalysis Group, van’t Hoff Institute for Molecular
Science (HIMS), University of Amsterdam
(UvA), Science Park 904, 1098 XH Amsterdam, The Netherlands
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18
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Ngai C, da Camara B, Woods CZ, Hooley RJ. Size- and Shape-Selective Catalysis with a Functionalized Self-Assembled Cage Host. J Org Chem 2021; 86:12862-12871. [PMID: 34492175 DOI: 10.1021/acs.joc.1c01511] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A self-assembled Fe4L6 cage with internally oriented carboxylic acid functions was shown to catalyze a variety of dissociative nucleophilic substitution reactions that proceed via oxocarbenium ion or carbocation intermediates. The catalytic behavior of the cage was compared to that of other small acid catalysts, which illustrated large differences in reactivity of the cage-catalyzed reactions, dependent on the structure of the substrate. For example, only a 5% cage confers a 1000-fold rate acceleration of the thioetherification of vinyldiphenylmethanol when compared to the rate with free carboxylic acid surrogates but only a 52-fold acceleration in the formation of small thioacetals. Multiple factors control the variable reactivity in the host, including substrate inhibition, binding affinity, and accessibility of reactive groups once bound. Simple effective concentration increases or the overall charge of the cage does not explain the variations in reactivity shown by highly similar reactants in the host: small differences in structure can have large effects on reactivity. Reaction of large spherical guests is highly dependent on substitution, whereas flat guests are almost unaffected by size and shape differences. The cage is a promiscuous catalyst but has strong selectivity for particular substrate shapes, reminiscent of enzymatic activity.
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Affiliation(s)
- Courtney Ngai
- Department of Chemistry and the UC Riverside Center for Catalysis, University of California, Riverside, Riverside, California 92521, United States
| | - Bryce da Camara
- Department of Chemistry and the UC Riverside Center for Catalysis, University of California, Riverside, Riverside, California 92521, United States
| | - Connor Z Woods
- Department of Chemistry and the UC Riverside Center for Catalysis, University of California, Riverside, Riverside, California 92521, United States
| | - Richard J Hooley
- Department of Chemistry and the UC Riverside Center for Catalysis, University of California, Riverside, Riverside, California 92521, United States
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19
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Sokolova D, Tiefenbacher K. Optimized iminium-catalysed 1,4-reductions inside the resorcinarene capsule: achieving >90% ee with proline as catalyst. RSC Adv 2021; 11:24607-24612. [PMID: 34354825 PMCID: PMC8278068 DOI: 10.1039/d1ra04333a] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Accepted: 07/05/2021] [Indexed: 11/21/2022] Open
Abstract
In previous work, we demonstrated that iminium-catalysed 1,4-reductions inside the supramolecular resorcinarene capsule display increased enantioselectivities as compared to their regular solution counterparts. Utilizing proline as the chiral catalyst, enantioselectivities remained below 80% ee. In this study, the reaction conditions were optimized by determining the optimal capsule loading and HCl content. Additionally, it was found that alcohol additives increase the enantioselectivity of the capsule-catalysed reaction. As a result, we report enantioselectivities of up to 92% ee for iminium-catalysed 1,4-reductions relying on proline as the sole chiral source. This is of high interest, as proline is unable to deliver high enantioselectivities for 1,4-reductions in a regular solution setting. Investigations into the role of the alcohol additive revealed a dual role: it not only slowed down the background reaction but also increased the capsule-catalysed reaction rate. A supramolecular container enables highly enantioselective iminium chemistry using simple proline as the chiral source.![]()
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Affiliation(s)
- Daria Sokolova
- Department of Chemistry, University of Basel 4058 Basel Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel 4058 Basel Switzerland .,Department of Biosystems Science and Engineering, ETH Zürich 4058 Basel Switzerland
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20
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Olivo G, Capocasa G, Del Giudice D, Lanzalunga O, Di Stefano S. New horizons for catalysis disclosed by supramolecular chemistry. Chem Soc Rev 2021; 50:7681-7724. [PMID: 34008654 DOI: 10.1039/d1cs00175b] [Citation(s) in RCA: 86] [Impact Index Per Article: 21.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The adoption of a supramolecular approach in catalysis promises to address a number of unmet challenges, ranging from activity (unlocking of novel reaction pathways) to selectivity (alteration of the innate selectivity of a reaction, e.g. selective functionalization of C-H bonds) and regulation (switch ON/OFF, sequential catalysis, etc.). Supramolecular tools such as reversible association and recognition, pre-organization of reactants and stabilization of transition states upon binding offer a unique chance to achieve the above goals disclosing new horizons whose potential is being increasingly recognized and used, sometimes reaching the degree of ripeness for practical use. This review summarizes the main developments that have opened such new frontiers, with the aim of providing a guide to researchers approaching the field. We focus on artificial supramolecular catalysts of defined stoichiometry which, under homogeneous conditions, unlock outcomes that are highly difficult if not impossible to attain otherwise, namely unnatural reactivity or selectivity and catalysis regulation. The different strategies recently explored in supramolecular catalysis are concisely presented, and, for each one, a single or very few examples is/are described (mainly last 10 years, with only milestone older works discussed). The subject is divided into four sections in light of the key design principle: (i) nanoconfinement of reactants, (ii) recognition-driven catalysis, (iii) catalysis regulation by molecular machines and (iv) processive catalysis.
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Affiliation(s)
- Giorgio Olivo
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Giorgio Capocasa
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Daniele Del Giudice
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Osvaldo Lanzalunga
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
| | - Stefano Di Stefano
- Dipartimento di Chimica, Università degli Studi di Roma "La Sapienza", Dipartimento di Chimica and ISB-CNR Sede Secondaria di Roma - Meccanismi di Reazione, P.le A. Moro 5, I-00185 Rome, Italy.
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21
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Paul A, Shipman MA, Onabule DY, Sproules S, Symes MD. Selective aldehyde reductions in neutral water catalysed by encapsulation in a supramolecular cage. Chem Sci 2021; 12:5082-5090. [PMID: 34163748 PMCID: PMC8179549 DOI: 10.1039/d1sc00896j] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2021] [Accepted: 03/11/2021] [Indexed: 11/21/2022] Open
Abstract
The enhancement of reactivity inside supramolecular coordination cages has many analogies to the mode of action of enzymes, and continues to inspire the design of new catalysts for a range of reactions. However, despite being a near-ubiquitous class of reactions in organic chemistry, enhancement of the reduction of carbonyls to their corresponding alcohols remains very much underexplored in supramolecular coordination cages. Herein, we show that encapsulation of small aromatic aldehydes inside a supramolecular coordination cage allows the reduction of these aldehydes with the mild reducing agent sodium cyanoborohydride to proceed with high selectivity (ketones and esters are not reduced) and in good yields. In the absence of the cage, low pH conditions are essential for any appreciable conversion of the aldehydes to the alcohols. In contrast, the specific microenvironment inside the cage allows this reaction to proceed in bulk solution that is pH-neutral, or even basic. We propose that the cage acts to stabilise the protonated oxocarbenium ion reaction intermediates (enhancing aldehyde reactivity) whilst simultaneously favouring the encapsulation and reduction of smaller aldehydes (which fit more easily inside the cage). Such dual action (enhancement of reactivity and size-selectivity) is reminiscent of the mode of operation of natural enzymes and highlights the tremendous promise of cage architectures as selective catalysts.
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Affiliation(s)
- Avishek Paul
- WestCHEM, School of Chemistry, University of Glasgow University Avenue Glasgow G12 8QQ UK
| | - Michael A Shipman
- WestCHEM, School of Chemistry, University of Glasgow University Avenue Glasgow G12 8QQ UK
| | - Dolapo Y Onabule
- WestCHEM, School of Chemistry, University of Glasgow University Avenue Glasgow G12 8QQ UK
| | - Stephen Sproules
- WestCHEM, School of Chemistry, University of Glasgow University Avenue Glasgow G12 8QQ UK
| | - Mark D Symes
- WestCHEM, School of Chemistry, University of Glasgow University Avenue Glasgow G12 8QQ UK
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22
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Affiliation(s)
- Dominic Danielsiek
- Faculty of Chemistry and Biochemistry Ruhr-University Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Gerald Dyker
- Faculty of Chemistry and Biochemistry Ruhr-University Bochum Universitätsstraße 150 44801 Bochum Germany
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23
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Gaeta C, La Manna P, De Rosa M, Soriente A, Talotta C, Neri P. Supramolecular Catalysis with Self‐Assembled Capsules and Cages: What Happens in Confined Spaces. ChemCatChem 2020. [DOI: 10.1002/cctc.202001570] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Carmine Gaeta
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Pellegrino La Manna
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Margherita De Rosa
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Annunziata Soriente
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Carmen Talotta
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
| | - Placido Neri
- Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno Via Giovanni Paolo II I 84084 Fisciano, Salerno Italy
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24
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25
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Danielsiek D, Dyker G. DISTAL Dibromoresorcin[4]arenes Through Selective Deactivation: A Practical Optimization. European J Org Chem 2020. [DOI: 10.1002/ejoc.202001031] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Dominic Danielsiek
- Faculty of Chemistry and Biochemistry Ruhr‐University Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Gerald Dyker
- Faculty of Chemistry and Biochemistry Ruhr‐University Bochum Universitätsstraße 150 44801 Bochum Germany
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26
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Gambaro S, Talotta C, Della Sala P, Soriente A, De Rosa M, Gaeta C, Neri P. Kinetic and Thermodynamic Modulation of Dynamic Imine Libraries Driven by the Hexameric Resorcinarene Capsule. J Am Chem Soc 2020; 142:14914-14923. [PMID: 32786766 PMCID: PMC8010792 DOI: 10.1021/jacs.0c04705] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2020] [Indexed: 12/19/2022]
Abstract
The composition of dynamic covalent imine libraries (DCL) adapts to the presence of the hexameric resorcinarene capsule. In the presence of the self-assembled capsule, a kinetic and thermodynamic modulation of the imine constituents of the DCLs was observed, which was induced by an unusual predatory action of the capsule on specific imine constituents. More complex 2 × 2 DCLs also adapt to the presence of the hexameric capsule, showing a thermodynamic and kinetic modulation of the constituents induced by the predatory action of the capsule. By cross-referencing experimental data, a good selectivity (up to 66%) for one constituent can be induced in a 2 × 2 DCL.
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Affiliation(s)
- Stefania Gambaro
- Laboratory of Supramolecular
Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Carmen Talotta
- Laboratory of Supramolecular
Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Paolo Della Sala
- Laboratory of Supramolecular
Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular
Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Margherita De Rosa
- Laboratory of Supramolecular
Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular
Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
| | - Placido Neri
- Laboratory of Supramolecular
Chemistry, Dipartimento di Chimica e Biologia “A. Zambelli”, Università di Salerno, Via Giovanni Paolo II, I-84084 Fisciano, Salerno, Italy
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27
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Daver H, Rebek J, Himo F. Modeling the Reaction of Carboxylic Acids and Isonitriles in a Self-Assembled Capsule. Chemistry 2020; 26:10861-10870. [PMID: 32428333 PMCID: PMC7522688 DOI: 10.1002/chem.202001735] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Revised: 05/11/2020] [Indexed: 11/10/2022]
Abstract
Quantum chemical calculations were used to study the reaction of carboxylic acids with isonitriles inside a resorcinarene-based self-assembled capsule. Experimentally, it has been shown that the reactions between p-tolylacetic acid and n-butyl isonitrile or isopropyl isonitrile behave differently in the presence of the capsule compared both with each other and also with their solution counterparts. Herein, the reasons for these divergent behaviors are addressed by comparing the detailed energy profiles for the reactions of the two isonitriles inside and outside the capsule. An energy decomposition analysis was conducted to quantify the different factors affecting the reactivity. The calculations reproduce the experimental findings very well. Thus, encapsulation leads to lowering of the energy barrier for the first step of the reaction, the concerted α-addition and proton transfer, which in solution is rate-determining, and this explains the rate acceleration observed in the presence of the capsule. The barrier for the final step of the reaction, the 1,3 O→N acyl transfer, is calculated to be higher with the isopropyl substituent inside the capsule compared with n-butyl. With the isopropyl substituent, the transition state and the product of this step are significantly shorter than the preceding intermediate, and this results in energetically unfavorable empty spaces inside the capsule, which cause a higher barrier. With the n-butyl substituent, on the other hand, the carbon chain can untwine and hence uphold an appropriate guest length.
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Affiliation(s)
- Henrik Daver
- Department of Organic ChemistryArrhenius LaboratoryStockholm University106 91StockholmSweden
- Present address: Department of Drug Design and PharmacologyUniversity of CopenhagenUniversitetsparken 22100CopenhagenDenmark
| | - Julius Rebek
- The Skaggs Institute for Chemical Biology and Department of ChemistryThe Scripps Research Institute10550 North Torrey Pines RoadLa JollaCalifornia92037USA
- Center for Supramolecular Chemistry and CatalysisShanghai UniversityShanghai200444P.R. China
| | - Fahmi Himo
- Department of Organic ChemistryArrhenius LaboratoryStockholm University106 91StockholmSweden
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28
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Nemat SJ, Jędrzejewska H, Prescimone A, Szumna A, Tiefenbacher K. Catechol[4]arene: The Missing Chiral Member of the Calix[4]arene Family. Org Lett 2020; 22:5506-5510. [PMID: 32627560 DOI: 10.1021/acs.orglett.0c01864] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A missing, inherently chiral member of the calix[4]arene family denoted "catechol[4]arene" was synthesized. Its properties were studied and compared to the ones of its close relatives resorcin[4]arene and pyrogallol[4]arene. This novel supramolecular host exhibits binding capabilities that are superior to its sister molecules in polar media. The enantiomerically pure forms of the macrocycle display modest recognition of chiral ammonium salts.
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Affiliation(s)
- Suren J Nemat
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Hanna Jędrzejewska
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Alessandro Prescimone
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland
| | - Agnieszka Szumna
- Institute of Organic Chemistry Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Konrad Tiefenbacher
- Department of Chemistry, University of Basel, Mattenstrasse 24a, 4058 Basel, Switzerland.,Department of Biosystems Science and Engineering, ETH Zurich, Mattenstrasse 24, 4058 Basel, Switzerland
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29
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Wang K, Jordan JH, Hu X, Wang L. Supramolecular Strategies for Controlling Reactivity within Confined Nanospaces. Angew Chem Int Ed Engl 2020; 59:13712-13721. [DOI: 10.1002/anie.202000045] [Citation(s) in RCA: 57] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/02/2020] [Indexed: 12/16/2022]
Affiliation(s)
- Kaiya Wang
- School of Material Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Jacobs H. Jordan
- The Southern Regional Research Center Agricultural Research Service, USDA New Orleans LA 70124 USA
| | - Xiao‐Yu Hu
- School of Material Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Leyong Wang
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 China
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30
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Wang K, Jordan JH, Hu X, Wang L. Supramolecular Strategies for Controlling Reactivity within Confined Nanospaces. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202000045] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Kaiya Wang
- School of Material Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Jacobs H. Jordan
- The Southern Regional Research Center Agricultural Research Service, USDA New Orleans LA 70124 USA
| | - Xiao‐Yu Hu
- School of Material Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Leyong Wang
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 China
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31
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Nödling AR, Santi N, Williams TL, Tsai YH, Luk LYP. Enabling protein-hosted organocatalytic transformations. RSC Adv 2020; 10:16147-16161. [PMID: 33184588 PMCID: PMC7654312 DOI: 10.1039/d0ra01526a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Accepted: 03/25/2020] [Indexed: 12/30/2022] Open
Abstract
In this review, the development of organocatalytic artificial enzymes will be discussed. This area of protein engineering research has underlying importance, as it enhances the biocompatibility of organocatalysis for applications in chemical and synthetic biology research whilst expanding the catalytic repertoire of enzymes. The approaches towards the preparation of organocatalytic artificial enzymes, techniques used to improve their performance (selectivity and reactivity) as well as examples of their applications are presented. Challenges and opportunities are also discussed.
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Affiliation(s)
- Alexander R Nödling
- School of Chemistry, Cardiff University, Main Building, Cardiff, CF10 3AT, UK.
| | - Nicolò Santi
- School of Chemistry, Cardiff University, Main Building, Cardiff, CF10 3AT, UK.
| | - Thomas L Williams
- School of Chemistry, Cardiff University, Main Building, Cardiff, CF10 3AT, UK.
| | - Yu-Hsuan Tsai
- School of Chemistry, Cardiff University, Main Building, Cardiff, CF10 3AT, UK.
| | - Louis Y P Luk
- School of Chemistry, Cardiff University, Main Building, Cardiff, CF10 3AT, UK.
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32
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Lauer JC, Pang Z, Janßen P, Rominger F, Kirschbaum T, Elstner M, Mastalerz M. Host-Guest Chemistry of Truncated Tetrahedral Imine Cages with Ammonium Ions. ChemistryOpen 2020; 9:183-190. [PMID: 32025463 PMCID: PMC6996569 DOI: 10.1002/open.201900357] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 01/10/2020] [Indexed: 01/29/2023] Open
Abstract
Three shape-persistent [4+4] imine cages with truncated tetrahedral geometry with different window sizes were studied as hosts for the encapsulation of tetra-n-alkylammonium salts of various bulkiness. In various solvents the cages behave differently. For instance, in dichloromethane the cage with smallest window size takes up NEt4+ but not NMe4+, which is in contrast to the two cages with larger windows hosting both ions. To find out the reason for this, kinetic experiments were carried out to determine the velocity of uptake but also to deduce the activation barriers for these processes. To support the experimental results, calculations for the guest uptakes have been performed by molecular mechanics' simulations. Finally, the complexation of pharmaceutical interested compounds, such as acetylcholine, muscarine or denatonium have been determined by NMR experiments.
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Affiliation(s)
- Jochen C. Lauer
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Ziwei Pang
- Institut für Physikalische Chemie Theoretische Chemische BiologieUniversität Karlsruhe Geb. 30.44Kaiserstr. 1276131KarlsruheGermany
| | - Paul Janßen
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Frank Rominger
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Tobias Kirschbaum
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
| | - Marcus Elstner
- Institut für Physikalische Chemie Theoretische Chemische BiologieUniversität Karlsruhe Geb. 30.44Kaiserstr. 1276131KarlsruheGermany
| | - Michael Mastalerz
- Organisch-Chemisches InstitutRuprecht-Karls-Universität HeidelbergIm Neuenheimer Feld 27069120HeidelbergGermany
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33
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La Manna P, De Rosa M, Talotta C, Rescifina A, Floresta G, Soriente A, Gaeta C, Neri P. Synergic Interplay Between Halogen Bonding and Hydrogen Bonding in the Activation of a Neutral Substrate in a Nanoconfined Space. Angew Chem Int Ed Engl 2020; 59:811-818. [DOI: 10.1002/anie.201909865] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2019] [Revised: 10/17/2019] [Indexed: 12/16/2022]
Affiliation(s)
- Pellegrino La Manna
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Margherita De Rosa
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Carmen Talotta
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Antonio Rescifina
- Dipartimento di Scienze del FarmacoUniversità di Catania viale Andrea Doria, 6 95125 Catania Italy
| | - Giuseppe Floresta
- Dipartimento di Scienze del FarmacoUniversità di Catania viale Andrea Doria, 6 95125 Catania Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Placido Neri
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
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34
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Horiuchi S, Matsuo C, Sakuda E, Arikawa Y, Clever GH, Umakoshi K. Anion-mediated encapsulation-induced emission enhancement of an IrIII complex within a resorcin[4]arene hexameric capsule. Dalton Trans 2020; 49:8472-8477. [DOI: 10.1039/d0dt01485k] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The anions of the Ir complex salts control the thermodynamic stability and photoluminescence properties of the host–guest complex.
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Affiliation(s)
- Shinnosuke Horiuchi
- Division of Chemistry and Materials Science
- Graduate School of Engineering
- Nagasaki University
- Nagasaki
- Japan
| | - Chiharu Matsuo
- Division of Chemistry and Materials Science
- Graduate School of Engineering
- Nagasaki University
- Nagasaki
- Japan
| | - Eri Sakuda
- Division of Chemistry and Materials Science
- Graduate School of Engineering
- Nagasaki University
- Nagasaki
- Japan
| | - Yasuhiro Arikawa
- Division of Chemistry and Materials Science
- Graduate School of Engineering
- Nagasaki University
- Nagasaki
- Japan
| | - Guido H. Clever
- Faculty of Chemistry and Chemical Biology
- TU Dortmund University
- Dortmund
- Germany
| | - Keisuke Umakoshi
- Division of Chemistry and Materials Science
- Graduate School of Engineering
- Nagasaki University
- Nagasaki
- Japan
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35
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Loose D, Aniol A, Feigel M, Röhling S, Dyker G. Mono‐ and Tri‐Functionalization of Trimethylresorcin[4]arenes. European J Org Chem 2019. [DOI: 10.1002/ejoc.201901564] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Dirk Loose
- Faculty of Chemistry and Biochemistry Ruhr‐University Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Alexandra Aniol
- Faculty of Chemistry and Biochemistry Ruhr‐University Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Martin Feigel
- Faculty of Chemistry and Biochemistry Ruhr‐University Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Sebastian Röhling
- Faculty of Chemistry and Biochemistry Ruhr‐University Bochum Universitätsstraße 150 44801 Bochum Germany
| | - Gerald Dyker
- Faculty of Chemistry and Biochemistry Ruhr‐University Bochum Universitätsstraße 150 44801 Bochum Germany
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36
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La Manna P, De Rosa M, Talotta C, Rescifina A, Floresta G, Soriente A, Gaeta C, Neri P. Synergic Interplay Between Halogen Bonding and Hydrogen Bonding in the Activation of a Neutral Substrate in a Nanoconfined Space. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201909865] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Pellegrino La Manna
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Margherita De Rosa
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Carmen Talotta
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Antonio Rescifina
- Dipartimento di Scienze del FarmacoUniversità di Catania viale Andrea Doria, 6 95125 Catania Italy
| | - Giuseppe Floresta
- Dipartimento di Scienze del FarmacoUniversità di Catania viale Andrea Doria, 6 95125 Catania Italy
| | - Annunziata Soriente
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Carmine Gaeta
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
| | - Placido Neri
- Laboratory of Supramolecular ChemistryDipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II, 132 84084 Fisciano (Salerno) Italy
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37
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Ngai C, Bogie PM, Holloway LR, Dietz PC, Mueller LJ, Hooley RJ. Cofactor-Mediated Nucleophilic Substitution Catalyzed by a Self-Assembled Holoenzyme Mimic. J Org Chem 2019; 84:12000-12008. [PMID: 31449754 DOI: 10.1021/acs.joc.9b01880] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
A self-assembled Fe4L6 cage is capable of co-encapsulating multiple carboxylic acid containing guests in its cavity, and these acids can act as cofactors for cage-catalyzed nucleophilic substitutions. The kinetics of the substitution reaction depend on the size, shape, and binding affinity of each of the components, and small structural changes in guest size can have large effects on the reaction. The host is quite promiscuous and is capable of binding multiple guests with micromolar binding affinities while retaining the ability to effect turnover and catalysis. Substrate binding modes vary widely, from simple 1:1 complexes to 1:2 complexes that can show either negative or positive cooperativity, depending on the guest. The molecularity of the dissociative substitution reaction varies, depending on the electrophile leaving group, acid cofactor, and nucleophile size: small changes in the nature of substrate can have large effects on reaction kinetics, all controlled by selective molecular recognition in the cage interior.
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Affiliation(s)
- Courtney Ngai
- Department of Chemistry , University of California-Riverside , Riverside , California 92521 , United States
| | - Paul M Bogie
- Department of Chemistry , University of California-Riverside , Riverside , California 92521 , United States
| | - Lauren R Holloway
- Department of Chemistry , University of California-Riverside , Riverside , California 92521 , United States
| | - Phillip C Dietz
- Department of Chemistry , University of California-Riverside , Riverside , California 92521 , United States
| | - Leonard J Mueller
- Department of Chemistry , University of California-Riverside , Riverside , California 92521 , United States
| | - Richard J Hooley
- Department of Chemistry , University of California-Riverside , Riverside , California 92521 , United States
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38
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Zhang Q, Tiefenbacher K. Sesquiterpene Cyclizations inside the Hexameric Resorcinarene Capsule: Total Synthesis of δ‐Selinene and Mechanistic Studies. Angew Chem Int Ed Engl 2019; 58:12688-12695. [DOI: 10.1002/anie.201906753] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2019] [Indexed: 12/21/2022]
Affiliation(s)
- Qi Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationCollege of ChemistrySichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Konrad Tiefenbacher
- Department of ChemistryUniversity of Basel Postfach 3350, Mattenstrasse 24a 4002 Basel Switzerland
- Department of Biosystems Science and EngineeringETH Zurich Mattenstrasse 26 4058 Basel Switzerland
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39
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Zhang J, Jia J, Zeng X, Wang Y, Zhang Z, Gridnev ID, Zhang W. Chemo‐ and Enantioselective Hydrogenation of α‐Formyl Enamides: An Efficient Access to Chiral α‐Amido Aldehydes. Angew Chem Int Ed Engl 2019; 58:11505-11512. [DOI: 10.1002/anie.201905263] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2019] [Indexed: 12/12/2022]
Affiliation(s)
- Jian Zhang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Jia Jia
- School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Xincheng Zeng
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Yuanhao Wang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Zhenfeng Zhang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Ilya D. Gridnev
- Department of ChemistryGraduate School of ScienceTohoku University Aramaki 3–6, Aoba-ku Sendai 980-8578 Japan
| | - Wanbin Zhang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
- School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
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40
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Zhang Q, Tiefenbacher K. Sesquiterpene Cyclizations inside the Hexameric Resorcinarene Capsule: Total Synthesis of δ‐Selinene and Mechanistic Studies. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201906753] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Qi Zhang
- Key Laboratory of Green Chemistry and Technology of Ministry of EducationCollege of ChemistrySichuan University 29 Wangjiang Road Chengdu 610064 P. R. China
| | - Konrad Tiefenbacher
- Department of ChemistryUniversity of Basel Postfach 3350, Mattenstrasse 24a 4002 Basel Switzerland
- Department of Biosystems Science and EngineeringETH Zurich Mattenstrasse 26 4058 Basel Switzerland
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41
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Abstract
In the last decades, supramolecular chemists have developed new molecular receptors able to include a wide range of guests. In addition, they have designed synthetic hosts able to form capsules having an internal volume of thousands of Å3. This inner space shows different features from the bulk solution. In particular, this environment has recently been employed to perform chemical reactions, obtaining reaction products different from the “normal” conditions. These supramolecular capsules act as nanoreactors, catalyzing many chemical transformations. This review collects the recent developments (since 2015) in this field, focusing on supramolecular capsules based on resorcinarene hexameric capsules and metal-cage capsules.
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42
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Luo N, Liao J, Ouyang L, Wen H, Liu J, Tang W, Luo R. Highly pH-Dependent Chemoselective Transfer Hydrogenation of α,β-Unsaturated Aldehydes in Water. Organometallics 2019. [DOI: 10.1021/acs.organomet.9b00353] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- Nianhua Luo
- School of Pharmacy, Gannan Medical University, Ganzhou, 341000, Jiangxi Province, P. R. China
- School of Chemistry and Environmental Science, Shangrao Normal University, Shangrao, 334001, Jiangxi Province, P. R. China
| | - Jianhua Liao
- School of Pharmacy, Gannan Medical University, Ganzhou, 341000, Jiangxi Province, P. R. China
| | - Lu Ouyang
- School of Pharmacy, Gannan Medical University, Ganzhou, 341000, Jiangxi Province, P. R. China
| | - Huiling Wen
- School of Pharmacy, Gannan Medical University, Ganzhou, 341000, Jiangxi Province, P. R. China
| | - Jitian Liu
- School of Pharmacy, University of Wisconsin—Madison, Madison, Wisconsin 53705, United States
| | - Weiping Tang
- School of Pharmacy, University of Wisconsin—Madison, Madison, Wisconsin 53705, United States
| | - Renshi Luo
- School of Pharmacy, Gannan Medical University, Ganzhou, 341000, Jiangxi Province, P. R. China
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43
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Zhang J, Jia J, Zeng X, Wang Y, Zhang Z, Gridnev ID, Zhang W. Chemo‐ and Enantioselective Hydrogenation of α‐Formyl Enamides: An Efficient Access to Chiral α‐Amido Aldehydes. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201905263] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Jian Zhang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Jia Jia
- School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Xincheng Zeng
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Yuanhao Wang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Zhenfeng Zhang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
| | - Ilya D. Gridnev
- Department of ChemistryGraduate School of ScienceTohoku University Aramaki 3–6, Aoba-ku Sendai 980-8578 Japan
| | - Wanbin Zhang
- Shanghai Key Laboratory for Molecular Engineering of Chiral DrugsSchool of PharmacyShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
- School of Chemistry and Chemical EngineeringShanghai Jiao Tong University 800 Dongchuan Road Shanghai 200240 China
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44
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Jordan JH, Wishard A, Mague JT, Gibb BC. Binding Properties and Supramolecular Polymerization of a Water-Soluble Resorcin[4]arene. Org Chem Front 2019; 6:1236-1243. [PMID: 31772734 PMCID: PMC6879061 DOI: 10.1039/c9qo00182d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Controlling the self-assembly of molecules in water is difficult because the small size, polarity, and hydrogen bond donating and accepting properties of water attenuate most non-covalent interactions. Here we describe how resorcinarene 1, with pyridinium pendent groups, assembles in water to form head-to-tail assemblies. These small supramolecular polymers form because they offer greater stabilization than any latent head-to-head assembly of resorcinarenes to form dimeric (or hexameric) containers. Instead, the resorcinarene bowl - particularly if negatively charged - is a good host for the pyridinium pendent groups of a second resorcinarene. Alternatively, resorcinarene 1 is also a good host for complexing anions and cations of any added salt. In combination therefore, host 1 possesses a rich repertoire of supramolecular properties that is dependent on the ionic strength and the nature of salts, pH, and the concentration of the host. These findings provide new information about controlling the self-assembly of resorcinarenes in water.
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Affiliation(s)
- Jacobs H Jordan
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA,
| | - Anthony Wishard
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA,
| | - Joel T Mague
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA,
| | - Bruce C Gibb
- Department of Chemistry, Tulane University, New Orleans, LA 70118, USA,
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45
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Pahima E, Zhang Q, Tiefenbacher K, Major DT. Discovering Monoterpene Catalysis Inside Nanocapsules with Multiscale Modeling and Experiments. J Am Chem Soc 2019; 141:6234-6246. [PMID: 30907083 DOI: 10.1021/jacs.8b13411] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Large-scale production of natural products, such as terpenes, presents a significant scientific and technological challenge. One promising approach to tackle this problem is chemical synthesis inside nanocapsules, although enzyme-like control of such chemistry has not yet been achieved. In order to better understand the complex chemistry inside nanocapsules, we design a multiscale nanoreactor simulation approach. The nanoreactor simulation protocol consists of hybrid quantum mechanics-molecular mechanics-based high temperature Langevin molecular dynamics simulations. Using this approach we model the tail-to-head formation of monoterpenes inside a resorcin[4]arene-based capsule (capsule I). We provide a rationale for the experimentally observed kinetics of monoterpene product formation and product distribution using capsule I, and we explain why additional stable monoterpenes, like camphene, are not observed. On the basis of the in-capsule I simulations, and mechanistic insights, we propose that feeding the capsule with pinene can yield camphene, and this proposal is verified experimentally. This suggests that the capsule may direct the dynamic reaction cascades by virtue of π-cation interactions.
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Affiliation(s)
- Efrat Pahima
- Department of Chemistry , Bar-Ilan University , Ramat-Gan 52900 , Israel
| | - Qi Zhang
- Department of Chemistry , University of Basel , Mattenstrasse 24a , 4058 Basel , Switzerland
| | - Konrad Tiefenbacher
- Department of Chemistry , University of Basel , Mattenstrasse 24a , 4058 Basel , Switzerland.,Department of Biosystems Science and Engineering , ETH Zurich , Mattenstrasse 24 , 4058 Basel , Switzerland
| | - Dan T Major
- Department of Chemistry , Bar-Ilan University , Ramat-Gan 52900 , Israel
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46
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Kaizerman-Kane D, Hadar M, Tal N, Dobrovetsky R, Zafrani Y, Cohen Y. pH-Responsive Pillar[6]arene-based Water-Soluble Supramolecular Hexagonal Boxes. Angew Chem Int Ed Engl 2019; 58:5302-5306. [PMID: 30786135 DOI: 10.1002/anie.201900217] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2019] [Revised: 02/14/2019] [Indexed: 01/08/2023]
Abstract
We describe the preparation of the first water-soluble pH-responsive supramolecular hexagonal boxes (SHBs) based on multiple charge-assisted hydrogen bonds between peramino-pillar[6]arenes 2 with the molecular "lid" mellitic acid (1 a). The interaction between 2 and 1 a, as well as the other "lids" pyromellitic and trimesic acids (1 b and 1 c, respecively) were studied by a combination of experimental and computational methods. Interestingly, the addition of 1 a to the complexes of the protonated form of pillar[6]arene 2, that is, 3, with bis-sulfonate 4 a or 4 b, immediately led to guest escape along with the formation of closed 1 a2 2 supramolecular boxes. Moreover, the process of the openning and closing of the supramolecular boxes along with threading and escaping of the guests, respectively, was found to be reversible and pH-responsive. This study paves the way for the easy and modular preparation of different SHBs that may have myriad applications.
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Affiliation(s)
- Dana Kaizerman-Kane
- School of Chemistry, Sackler Faculty of Exact sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Maya Hadar
- School of Chemistry, Sackler Faculty of Exact sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Noam Tal
- School of Chemistry, Sackler Faculty of Exact sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Roman Dobrovetsky
- School of Chemistry, Sackler Faculty of Exact sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
| | - Yossi Zafrani
- School of Chemistry, Sackler Faculty of Exact sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel.,Department of Organic Chemistry, Israel Institute for Biological Research, Ness-Ziona, 740000, Israel
| | - Yoram Cohen
- School of Chemistry, Sackler Faculty of Exact sciences, Tel Aviv University, Ramat Aviv, 69978, Tel Aviv, Israel
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47
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Kaizerman‐Kane D, Hadar M, Tal N, Dobrovetsky R, Zafrani Y, Cohen Y. pH‐Responsive Pillar[6]arene‐based Water‐Soluble Supramolecular Hexagonal Boxes. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201900217] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Dana Kaizerman‐Kane
- School of ChemistrySackler Faculty of Exact sciencesTel Aviv University Ramat Aviv 69978 Tel Aviv Israel
| | - Maya Hadar
- School of ChemistrySackler Faculty of Exact sciencesTel Aviv University Ramat Aviv 69978 Tel Aviv Israel
| | - Noam Tal
- School of ChemistrySackler Faculty of Exact sciencesTel Aviv University Ramat Aviv 69978 Tel Aviv Israel
| | - Roman Dobrovetsky
- School of ChemistrySackler Faculty of Exact sciencesTel Aviv University Ramat Aviv 69978 Tel Aviv Israel
| | - Yossi Zafrani
- School of ChemistrySackler Faculty of Exact sciencesTel Aviv University Ramat Aviv 69978 Tel Aviv Israel
- Department of Organic ChemistryIsrael Institute for Biological Research Ness-Ziona 740000 Israel
| | - Yoram Cohen
- School of ChemistrySackler Faculty of Exact sciencesTel Aviv University Ramat Aviv 69978 Tel Aviv Israel
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48
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Gaeta C, Talotta C, De Rosa M, La Manna P, Soriente A, Neri P. The Hexameric Resorcinarene Capsule at Work: Supramolecular Catalysis in Confined Spaces. Chemistry 2019; 25:4899-4913. [DOI: 10.1002/chem.201805206] [Citation(s) in RCA: 58] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 11/21/2018] [Indexed: 12/22/2022]
Affiliation(s)
- Carmine Gaeta
- Dipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II 84084 Fisciano SA Italy
| | - Carmen Talotta
- Dipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II 84084 Fisciano SA Italy
| | - Margherita De Rosa
- Dipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II 84084 Fisciano SA Italy
| | - Pellegrino La Manna
- Dipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II 84084 Fisciano SA Italy
| | - Annunziata Soriente
- Dipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II 84084 Fisciano SA Italy
| | - Placido Neri
- Dipartimento di Chimica e Biologia “A. Zambelli”Università di Salerno Via Giovanni Paolo II 84084 Fisciano SA Italy
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49
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Gambaro S, De Rosa M, Soriente A, Talotta C, Floresta G, Rescifina A, Gaeta C, Neri P. A hexameric resorcinarene capsule as a hydrogen bonding catalyst in the conjugate addition of pyrroles and indoles to nitroalkenes. Org Chem Front 2019. [DOI: 10.1039/c9qo00224c] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]
Abstract
A hexameric resorcinarene capsule (C) acts as a hydrogen bonding catalyst for the addition of nitroalkenes to pyrroles and indoles.
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Affiliation(s)
- Stefania Gambaro
- Dipartimento di Chimica e Biologia “A. Zambelli”
- Università degli Studi di Salerno
- I-84084 Fisciano
- Italy
| | - Margherita De Rosa
- Dipartimento di Chimica e Biologia “A. Zambelli”
- Università degli Studi di Salerno
- I-84084 Fisciano
- Italy
| | - Annunziata Soriente
- Dipartimento di Chimica e Biologia “A. Zambelli”
- Università degli Studi di Salerno
- I-84084 Fisciano
- Italy
| | - Carmen Talotta
- Dipartimento di Chimica e Biologia “A. Zambelli”
- Università degli Studi di Salerno
- I-84084 Fisciano
- Italy
| | - Giuseppe Floresta
- Dipartimento di Scienze del Farmaco
- Università di Catania
- 95125 Catania
- Italy
| | - Antonio Rescifina
- Dipartimento di Scienze del Farmaco
- Università di Catania
- 95125 Catania
- Italy
| | - Carmine Gaeta
- Dipartimento di Chimica e Biologia “A. Zambelli”
- Università degli Studi di Salerno
- I-84084 Fisciano
- Italy
| | - Placido Neri
- Dipartimento di Chimica e Biologia “A. Zambelli”
- Università degli Studi di Salerno
- I-84084 Fisciano
- Italy
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Affiliation(s)
- Shinji Yamada
- Department of Chemistry, Faculty of Science, Ochanomizu University, 2-1-1 Otsuka, Bunkyo-ku, Tokyo 112-8610, Japan
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