1
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Ingram AA, Wang D, Schwaneberg U, Okuda J. Grubbs-Hoveyda catalysts conjugated to a β-barrel protein: Effect of halide substitution on aqueous olefin metathesis activity. J Inorg Biochem 2024; 258:112616. [PMID: 38833874 DOI: 10.1016/j.jinorgbio.2024.112616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2024] [Revised: 05/15/2024] [Accepted: 05/18/2024] [Indexed: 06/06/2024]
Abstract
The effect of halide substitution in Grubbs-Hoveyda II catalysts (GHII catalysts) embedded in the engineered β-barrel protein nitrobindin (NB4exp) on metathesis activity in aqueous media was studied. Maleimide tagged dibromido and diiodido derivates of the GHII catalyst were synthesized and covalently conjugated to NB4exp. The biohybrid catalysts were characterized spectroscopically confirming the structural integrity. When the two chloride substituents at ruthenium center were exchanged against bromide and iodide, the diiodo derivative was found to show significantly higher catalytic activity in ring-closing metathesis of α,ω-diolefins, whereas the dibromido derivative was less efficient when compared with the parent dichlorido catalyst. Using the diiodido catalyst, high turnover numbers of up to 75 were observed for ring-closing metathesis (RCM) yielding unsaturated six- and seven-membered N-heterocycles.
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Affiliation(s)
- Aaron A Ingram
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Dong Wang
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany; Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Ulrich Schwaneberg
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Jun Okuda
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany.
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2
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Hanreich S, Bonandi E, Drienovská I. Design of Artificial Enzymes: Insights into Protein Scaffolds. Chembiochem 2023; 24:e202200566. [PMID: 36418221 DOI: 10.1002/cbic.202200566] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2022] [Revised: 11/18/2022] [Accepted: 11/21/2022] [Indexed: 11/25/2022]
Abstract
The design of artificial enzymes has emerged as a promising tool for the generation of potent biocatalysts able to promote new-to-nature reactions with improved catalytic performances, providing a powerful platform for wide-ranging applications and a better understanding of protein functions and structures. The selection of an appropriate protein scaffold plays a key role in the design process. This review aims to give a general overview of the most common protein scaffolds that can be exploited for the generation of artificial enzymes. Several examples are discussed and categorized according to the strategy used for the design of the artificial biocatalyst, namely the functionalization of natural enzymes, the creation of a new catalytic site in a protein scaffold bearing a wide hydrophobic pocket and de novo protein design. The review is concluded by a comparison of these different methods and by our perspective on the topic.
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Affiliation(s)
- Stefanie Hanreich
- Department of Chemistry and Pharmaceutical Sciences Vrije Universiteit, Amsterdam, De Boelelaan 1108, 1081 HZ Amsterdam (The, Netherlands
| | - Elisa Bonandi
- Department of Chemistry and Pharmaceutical Sciences Vrije Universiteit, Amsterdam, De Boelelaan 1108, 1081 HZ Amsterdam (The, Netherlands
| | - Ivana Drienovská
- Department of Chemistry and Pharmaceutical Sciences Vrije Universiteit, Amsterdam, De Boelelaan 1108, 1081 HZ Amsterdam (The, Netherlands
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3
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Huang S, Deng WH, Liao RZ, He C. Repurposing a Nitric Oxide Transport Hemoprotein Nitrophorin 2 for Olefin Cyclopropanation. ACS Catal 2022. [DOI: 10.1021/acscatal.2c03515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Shunzhi Huang
- School of Chemistry and Chemical Engineering, South China University of Technology, 510640 Guangzhou, China
| | - Wen-Hao Deng
- School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, 430074 Wuhan, China
| | - Rong-Zhen Liao
- School of Chemistry and Chemical Engineering, Huazhong University of Science and Technology, 430074 Wuhan, China
| | - Chunmao He
- School of Chemistry and Chemical Engineering, South China University of Technology, 510640 Guangzhou, China
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4
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5
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Markel U, Sauer DF, Wittwer M, Schiffels J, Cui H, Davari MD, Kröckert KW, Herres-Pawlis S, Okuda J, Schwaneberg U. Chemogenetic Evolution of a Peroxidase-like Artificial Metalloenzyme. ACS Catal 2021. [DOI: 10.1021/acscatal.1c00134] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Ulrich Markel
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Daniel F. Sauer
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Malte Wittwer
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Johannes Schiffels
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Haiyang Cui
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Mehdi D. Davari
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Konstantin W. Kröckert
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Sonja Herres-Pawlis
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Jun Okuda
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52056 Aachen, Germany
| | - Ulrich Schwaneberg
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
- DWI—Leibniz Institute for Interactive Materials, Forckenbeckstraße 50, 52074 Aachen, Germany
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6
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Ariga K, Shionoya M. Nanoarchitectonics for Coordination Asymmetry and Related Chemistry. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20200362] [Citation(s) in RCA: 56] [Impact Index Per Article: 18.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Katsuhiko Ariga
- World Premier International (WPI) Research Centre for Materials Nanoarchitectonics (MANA), National Institute for Materials Science (NIMS), 1-1 Namiki, Tsukuba, Ibaraki 305-0044, Japan
- Department of Advanced Materials Science, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8561, Japan
| | - Mitsuhiko Shionoya
- Department of Chemistry, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan
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7
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Sauer DF, Wittwer M, Markel U, Minges A, Spiertz M, Schiffels J, Davari MD, Groth G, Okuda J, Schwaneberg U. Chemogenetic engineering of nitrobindin toward an artificial epoxygenase. Catal Sci Technol 2021. [DOI: 10.1039/d1cy00609f] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Chemogenetic engineering turned the heme protein nitrobindin into an artificial epoxygenase: MnPPIX was introduced and subsequent protein engineering increased the activity in the epoxidation of styrene derivatives by overall 7-fold.
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Affiliation(s)
- Daniel F. Sauer
- Institute of Biotechnology
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Malte Wittwer
- Institute of Biotechnology
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Ulrich Markel
- Institute of Biotechnology
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Alexander Minges
- Institute of Biochemical Plant Physiology
- Heinrich Heine University Düsseldorf
- 40225 Düsseldorf
- Germany
| | - Markus Spiertz
- Institute of Biotechnology
- RWTH Aachen University
- 52074 Aachen
- Germany
| | | | - Mehdi D. Davari
- Institute of Biotechnology
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Georg Groth
- Institute of Biochemical Plant Physiology
- Heinrich Heine University Düsseldorf
- 40225 Düsseldorf
- Germany
| | - Jun Okuda
- Institute of Inorganic Chemistry
- RWTH Aachen University
- 52074 Aachen
- Germany
| | - Ulrich Schwaneberg
- Institute of Biotechnology
- RWTH Aachen University
- 52074 Aachen
- Germany
- DWI – Leibniz Institute for Interactive Materials
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8
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Himiyama T, Tsuchiya Y, Yonezawa Y, Nakamura T. Rebuilding Ring-Type Assembly of Peroxiredoxin by Chemical Modification. Bioconjug Chem 2020; 32:153-160. [PMID: 33334100 DOI: 10.1021/acs.bioconjchem.0c00587] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
Abstract
Direct control of the protein quaternary structure (QS) is challenging owing to the complexity of the protein structure. As a protein with a characteristic QS, peroxiredoxin from Aeropyrum pernix K1 (ApPrx) forms a decamer, wherein five dimers associate to form a ring. Here, we disrupted and reconstituted ApPrx QS via amino acid mutations and chemical modifications targeting hot spots for protein assembly. The decameric QS of an ApPrx* mutant, wherein all cysteine residues in wild-type ApPrx were mutated to serine, was destructed to dimers via an F80C mutation. The dimeric ApPrx*F80C mutant was then modified with a small molecule and successfully assembled as a decamer. Structural analysis confirmed that an artificially installed chemical moiety potentially facilitates suitable protein-protein interactions to rebuild a native structure. Rebuilding of dodecamer was also achieved through an additional amino acid mutation. This study describes a facile method to regulate the protein assembly state.
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Affiliation(s)
- Tomoki Himiyama
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka 563-8577, Japan.,DBT-AIST International Laboratory for Advanced Biomedicine (DAILAB), Ikeda, Osaka 563-8577, Japan
| | - Yuko Tsuchiya
- Artificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology, Koto-ku, Tokyo 135-0064, Japan
| | - Yasushige Yonezawa
- High Pressure Protein Research Center, Institute of Advanced Technology, Kindai University, Kinokawa, Wakayama 649-6493, Japan
| | - Tsutomu Nakamura
- Biomedical Research Institute, National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka 563-8577, Japan.,DBT-AIST International Laboratory for Advanced Biomedicine (DAILAB), Ikeda, Osaka 563-8577, Japan
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9
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Ghattas W, Mahy JP, Réglier M, Simaan AJ. Artificial Enzymes for Diels-Alder Reactions. Chembiochem 2020; 22:443-459. [PMID: 32852088 DOI: 10.1002/cbic.202000316] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2020] [Revised: 08/17/2020] [Indexed: 12/13/2022]
Abstract
The Diels-Alder (DA) reaction is a cycloaddition of a conjugated diene and an alkene (dienophile) leading to the formation of a cyclohexene derivative through a concerted mechanism. As DA reactions generally proceed with a high degree of regio- and stereoselectivity, they are widely used in synthetic organic chemistry. Considering eco-conscious public and governmental movements, efforts are now directed towards the development of synthetic processes that meet environmental concerns. Artificial enzymes, which can be developed to catalyze abiotic reactions, appear to be important synthetic tools in the synthetic biology field. This review describes the different strategies used to develop protein-based artificial enzymes for DA reactions, including for in cellulo approaches.
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Affiliation(s)
- Wadih Ghattas
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS, Université Paris Sud, Université Paris-Saclay, Orsay, 91405 Cedex 8, France
| | - Jean-Pierre Mahy
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS, Université Paris Sud, Université Paris-Saclay, Orsay, 91405 Cedex 8, France
| | - Marius Réglier
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Avenue Escadrille Normandie Niemen, Service 342, Marseille, 13397, France
| | - A Jalila Simaan
- Aix Marseille Univ, CNRS, Centrale Marseille, iSm2, Avenue Escadrille Normandie Niemen, Service 342, Marseille, 13397, France
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10
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Kato S, Onoda A, Grimm AR, Tachikawa K, Schwaneberg U, Hayashi T. Incorporation of a Cp*Rh(III)-dithiophosphate Cofactor with Latent Activity into a Protein Scaffold Generates a Biohybrid Catalyst Promoting C(sp 2)-H Bond Functionalization. Inorg Chem 2020; 59:14457-14463. [PMID: 32914980 DOI: 10.1021/acs.inorgchem.0c02245] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A Cp*Rh(III)-dithiophosphate cofactor with "latent" catalytic activity was developed to construct an artificial metalloenzyme representing a new type of biohybrid catalyst which is capable of promoting C(sp2)-H bond functionalization within the β-barrel structure of nitrobindin (NB). To covalently conjugate the Cp*Rh(III) cofactor into a specific position of the hydrophobic cavity of NB via a maleimide-Cys linkage, strong chelation of the dithiophosphate ligand is employed to protect the rhodium metal center against attack by nucleophilic amino acid residues in the protein. It is found that subsequent addition of the Ag+ ion induces dissociation of the dithiophosphate ligands, thereby activating the catalytic activity of the Cp*Rh(III) cofactor. The resulting "active" biohybrid catalyst promotes cycloaddition of acetophenone oxime with diphenylacetylene via C(sp2)-H bond activation. This catalytic activity is enhanced 2.3-fold with the introduction of two glutamate residues (A100E/L125E) adjacent to the Cp*Rh(III) cofactor. The Cp*Rh(III) cofactor with switchable activity from a "latent" form to an "active" form provides a new strategy for generating biohybrid catalysts incorporating a variety of highly reactive transition metal complexes specifically within its protein scaffolds.
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Affiliation(s)
- Shunsuke Kato
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
| | - Akira Onoda
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
| | - Alexander R Grimm
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Kengo Tachikawa
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
| | - Ulrich Schwaneberg
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Takashi Hayashi
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, Suita 565-0871, Japan
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11
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Himiyama T, Okamoto Y. Artificial Metalloenzymes: From Selective Chemical Transformations to Biochemical Applications. Molecules 2020; 25:molecules25132989. [PMID: 32629938 PMCID: PMC7411666 DOI: 10.3390/molecules25132989] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 06/26/2020] [Accepted: 06/27/2020] [Indexed: 11/16/2022] Open
Abstract
Artificial metalloenzymes (ArMs) comprise a synthetic metal complex in a protein scaffold. ArMs display performances combining those of both homogeneous catalysts and biocatalysts. Specifically, ArMs selectively catalyze non-natural reactions and reactions inspired by nature in water under mild conditions. In the past few years, the construction of ArMs that possess a genetically incorporated unnatural amino acid and the directed evolution of ArMs have become of great interest in the field. Additionally, biochemical applications of ArMs have steadily increased, owing to the fact that compartmentalization within a protein scaffold allows the synthetic metal complex to remain functional in a sea of inactivating biomolecules. In this review, we present updates on: 1) the newly reported ArMs, according to their type of reaction, and 2) the unique biochemical applications of ArMs, including chemoenzymatic cascades and intracellular/in vivo catalysis. We believe that ArMs have great potential as catalysts for organic synthesis and as chemical biology tools for pharmaceutical applications.
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Affiliation(s)
- Tomoki Himiyama
- National Institute of Advanced Industrial Science and Technology, Ikeda, Osaka 563-8577, Japan;
- DBT-AIST International Laboratory for Advanced Biomedicine (DAILAB), Ikeda, Osaka 563-8577, Japan
| | - Yasunori Okamoto
- Frontier Research Institute for Interdisciplinary Sciences, Tohoku University, 6-3 Aramaki aza Aoba, Aoba-ku, Sendai 980-8578, Japan
- Correspondence: ; Tel.: +81-22-795-5264
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12
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Gutiérrez de Souza C, Bersellini M, Roelfes G. Artificial Metalloenzymes based on TetR Proteins and Cu(II) for Enantioselective Friedel-Crafts Alkylation Reactions. ChemCatChem 2020; 12:3190-3194. [PMID: 32612714 PMCID: PMC7319431 DOI: 10.1002/cctc.202000245] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2020] [Revised: 03/31/2020] [Indexed: 12/16/2022]
Abstract
The supramolecular approach is among the most convenient methodologies for creating artificial metalloenzymes (ArMs). Usually this approach involves the binding of a transition metal ion complex to a biomolecular scaffold via its ligand, which also modulates the catalytic properties of the metal ion. Herein, we report ArMs based on the proteins CgmR, RamR and QacR from the TetR family of multidrug resistance regulators (MDRs) and Cu2+ ions, assembled without the need of a ligand. These ArMs catalyze the enantioselective vinylogous Friedel-Crafts alkylation reaction with up to 75 % ee. Competition experiments with ethidium and rhodamine 6G confirm that the reactions occur in the chiral environment of the hydrophobic pocket. It is proposed that the Cu2+-substrate complex is bound via a combination of electrostatic and π-stacking interactions provided by the second coordination sphere. This approach constitutes a fast and straightforward way to assemble metalloenzymes and may facilitate future optimization of the protein scaffolds via mutagenesis or directed evolution approaches.
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Affiliation(s)
- Cora Gutiérrez de Souza
- Stratingh Institute for ChemistryUniversity of Groningen Nijenborgh49747AG GroningenThe Netherlands
| | - Manuela Bersellini
- Stratingh Institute for ChemistryUniversity of Groningen Nijenborgh49747AG GroningenThe Netherlands
| | - Gerard Roelfes
- Stratingh Institute for ChemistryUniversity of Groningen Nijenborgh49747AG GroningenThe Netherlands
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13
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Ghattas W, Dubosclard V, Tachon S, Beaumet M, Guillot R, Réglier M, Simaan AJ, Mahy J. Cu
II
‐Containing 1‐Aminocyclopropane Carboxylic Acid Oxidase Is an Efficient Stereospecific Diels–Alderase. Angew Chem Int Ed Engl 2019; 58:14605-14609. [DOI: 10.1002/anie.201909407] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Indexed: 12/15/2022]
Affiliation(s)
- Wadih Ghattas
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Virginie Dubosclard
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Sybille Tachon
- Institut des Sciences Moléculaires de Marseille (iSm2), UMR 7313 CNRS – Aix Marseille Univ Centrale Marseille Marseille 13013 Cedex France
| | - Morane Beaumet
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Régis Guillot
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Marius Réglier
- Institut des Sciences Moléculaires de Marseille (iSm2), UMR 7313 CNRS – Aix Marseille Univ Centrale Marseille Marseille 13013 Cedex France
| | - A. Jalila Simaan
- Institut des Sciences Moléculaires de Marseille (iSm2), UMR 7313 CNRS – Aix Marseille Univ Centrale Marseille Marseille 13013 Cedex France
| | - Jean‐Pierre Mahy
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
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14
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Ghattas W, Dubosclard V, Tachon S, Beaumet M, Guillot R, Réglier M, Simaan AJ, Mahy J. Cu
II
‐Containing 1‐Aminocyclopropane Carboxylic Acid Oxidase Is an Efficient Stereospecific Diels–Alderase. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201909407] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Wadih Ghattas
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Virginie Dubosclard
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Sybille Tachon
- Institut des Sciences Moléculaires de Marseille (iSm2), UMR 7313 CNRS – Aix Marseille Univ Centrale Marseille Marseille 13013 Cedex France
| | - Morane Beaumet
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Régis Guillot
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
| | - Marius Réglier
- Institut des Sciences Moléculaires de Marseille (iSm2), UMR 7313 CNRS – Aix Marseille Univ Centrale Marseille Marseille 13013 Cedex France
| | - A. Jalila Simaan
- Institut des Sciences Moléculaires de Marseille (iSm2), UMR 7313 CNRS – Aix Marseille Univ Centrale Marseille Marseille 13013 Cedex France
| | - Jean‐Pierre Mahy
- Institut de Chimie Moléculaire et des Matériaux d'Orsay (ICMMO), UMR 8182 CNRS – Univ Paris Sud Université Paris-Saclay Orsay 91405 Cedex France
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15
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Mansot J, Vasseur J, Arseniyadis S, Smietana M. α,β‐Unsaturated 2‐Acyl‐Imidazoles in Asymmetric Biohybrid Catalysis. ChemCatChem 2019. [DOI: 10.1002/cctc.201900743] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Justine Mansot
- Institut des Biomolécules Max MousseronUMR 5247 CNRS Université de Montpellier, ENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Jean‐Jacques Vasseur
- Institut des Biomolécules Max MousseronUMR 5247 CNRS Université de Montpellier, ENSCM Place Eugène Bataillon 34095 Montpellier France
| | - Stellios Arseniyadis
- Queen Mary University of LondonSchool of Biological and Chemical Sciences Mile End Road E1 4NS London UK
| | - Michael Smietana
- Institut des Biomolécules Max MousseronUMR 5247 CNRS Université de Montpellier, ENSCM Place Eugène Bataillon 34095 Montpellier France
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16
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Markel U, Sauer DF, Schiffels J, Okuda J, Schwaneberg U. Towards the Evolution of Artificial Metalloenzymes—A Protein Engineer's Perspective. Angew Chem Int Ed Engl 2019; 58:4454-4464. [DOI: 10.1002/anie.201811042] [Citation(s) in RCA: 46] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Indexed: 12/23/2022]
Affiliation(s)
- Ulrich Markel
- Institute of Biotechnology RWTH Aachen University Worringer Weg 3 52074 Aachen Germany
| | - Daniel F. Sauer
- Institute of Biotechnology RWTH Aachen University Worringer Weg 3 52074 Aachen Germany
| | - Johannes Schiffels
- Institute of Biotechnology RWTH Aachen University Worringer Weg 3 52074 Aachen Germany
| | - Jun Okuda
- Institute of Inorganic Chemistry RWTH Aachen University Landoltweg 1 52056 Aachen Germany
| | - Ulrich Schwaneberg
- DWI Leibniz-Institute for Interactive Materials Forckenbeckstrasse 50 52074 Aachen Germany
- Institute of Biotechnology RWTH Aachen University Worringer Weg 3 52074 Aachen Germany
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17
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Markel U, Sauer DF, Schiffels J, Okuda J, Schwaneberg U. Auf dem Weg zur Evolution artifizieller Metalloenzyme – aus einem Protein‐Engineering‐Blickwinkel. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201811042] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Affiliation(s)
- Ulrich Markel
- Institut für Biotechnologie RWTH Aachen Worringer Weg 3 52074 Aachen Deutschland
| | - Daniel F. Sauer
- Institut für Biotechnologie RWTH Aachen Worringer Weg 3 52074 Aachen Deutschland
| | - Johannes Schiffels
- Institut für Biotechnologie RWTH Aachen Worringer Weg 3 52074 Aachen Deutschland
| | - Jun Okuda
- Institut für Anorganische Chemie RWTH Aachen Landoltweg 1 52056 Aachen Deutschland
| | - Ulrich Schwaneberg
- DWI Leibniz-Institut für Interaktive Materialien Forckenbeckstraße 50 52074 Aachen Deutschland
- Institut für Biotechnologie RWTH Aachen Worringer Weg 3 52074 Aachen Deutschland
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18
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Sauer DF, Schiffels J, Hayashi T, Schwaneberg U, Okuda J. Olefin metathesis catalysts embedded in β-barrel proteins: creating artificial metalloproteins for olefin metathesis. Beilstein J Org Chem 2018; 14:2861-2871. [PMID: 30546470 PMCID: PMC6278764 DOI: 10.3762/bjoc.14.265] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2018] [Accepted: 10/26/2018] [Indexed: 12/21/2022] Open
Abstract
This review summarizes the recent progress of Grubbs-Hoveyda (GH) type olefin metathesis catalysts incorporated into the robust fold of β-barrel proteins. Anchoring strategies are discussed and challenges and opportunities in this emerging field are shown from simple small-molecule transformations over ring-opening metathesis polymerizations to in vivo olefin metathesis.
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Affiliation(s)
- Daniel F Sauer
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
| | - Johannes Schiffels
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Takashi Hayashi
- Department of Applied Chemistry, Graduate School of Engineering, Osaka University, 2-1 Yamadaoka, Suita 565-0871, Japan
| | - Ulrich Schwaneberg
- Institute of Biotechnology, RWTH Aachen University, Worringerweg 3, 52074 Aachen, Germany
| | - Jun Okuda
- Institute of Inorganic Chemistry, RWTH Aachen University, Landoltweg 1, 52074 Aachen, Germany
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19
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Nödling AR, Świderek K, Castillo R, Hall JW, Angelastro A, Morrill LC, Jin Y, Tsai Y, Moliner V, Luk LYP. Reactivity and Selectivity of Iminium Organocatalysis Improved by a Protein Host. Angew Chem Int Ed Engl 2018; 57:12478-12482. [PMID: 30027571 PMCID: PMC6531919 DOI: 10.1002/anie.201806850] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2018] [Revised: 07/18/2018] [Indexed: 12/23/2022]
Abstract
There has been growing interest in performing organocatalysis within a supramolecular system as a means of controlling reaction reactivity and stereoselectivity. Here, a protein is used as a host for iminium catalysis. A pyrrolidine moiety is covalently linked to biotin and introduced to the protein host streptavidin for organocatalytic activity. Whereas in traditional systems stereoselectivity is largely controlled by the substituents added to the organocatalyst, enantiomeric enrichment by the reported supramolecular system is completely controlled by the host. Also, the yield of the model reaction increases over 10-fold when streptavidin is included. A 1.1 Å crystal structure of the protein-catalyst complex and molecular simulations of a key intermediate reveal the chiral scaffold surrounding the organocatalytic reaction site. This work illustrates that proteins can be an excellent supramolecular host for driving stereoselective secondary amine organocatalysis.
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Affiliation(s)
| | - Katarzyna Świderek
- Department de Química Física i AnalíticaUniversitat Jaume I12071CastellóSpain
| | - Raquel Castillo
- Department de Química Física i AnalíticaUniversitat Jaume I12071CastellóSpain
| | - Jonathan W. Hall
- School of Chemistry, Main BuildingCardiff UniversityCardiffCF10 3ATUK
| | | | - Louis C. Morrill
- School of Chemistry, Main BuildingCardiff UniversityCardiffCF10 3ATUK
| | - Yi Jin
- School of Chemistry, Main BuildingCardiff UniversityCardiffCF10 3ATUK
| | - Yu‐Hsuan Tsai
- School of Chemistry, Main BuildingCardiff UniversityCardiffCF10 3ATUK
| | - Vicent Moliner
- Department de Química Física i AnalíticaUniversitat Jaume I12071CastellóSpain
| | - Louis Y. P. Luk
- School of Chemistry, Main BuildingCardiff UniversityCardiffCF10 3ATUK
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20
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Nödling AR, Świderek K, Castillo R, Hall JW, Angelastro A, Morrill LC, Jin Y, Tsai YH, Moliner V, Luk LYP. Reactivity and Selectivity of Iminium Organocatalysis Improved by a Protein Host. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201806850] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
| | - Katarzyna Świderek
- Department de Química Física i Analítica; Universitat Jaume I; 12071 Castelló Spain
| | - Raquel Castillo
- Department de Química Física i Analítica; Universitat Jaume I; 12071 Castelló Spain
| | - Jonathan W. Hall
- School of Chemistry, Main Building; Cardiff University; Cardiff CF10 3AT UK
| | - Antonio Angelastro
- School of Chemistry, Main Building; Cardiff University; Cardiff CF10 3AT UK
| | - Louis C. Morrill
- School of Chemistry, Main Building; Cardiff University; Cardiff CF10 3AT UK
| | - Yi Jin
- School of Chemistry, Main Building; Cardiff University; Cardiff CF10 3AT UK
| | - Yu-Hsuan Tsai
- School of Chemistry, Main Building; Cardiff University; Cardiff CF10 3AT UK
| | - Vicent Moliner
- Department de Química Física i Analítica; Universitat Jaume I; 12071 Castelló Spain
| | - Louis Y. P. Luk
- School of Chemistry, Main Building; Cardiff University; Cardiff CF10 3AT UK
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21
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Ghattas W, Dubosclard V, Wick A, Bendelac A, Guillot R, Ricoux R, Mahy JP. Receptor-Based Artificial Metalloenzymes on Living Human Cells. J Am Chem Soc 2018; 140:8756-8762. [DOI: 10.1021/jacs.8b04326] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Wadih Ghattas
- Laboratoire de Chimie Bioorganique et Bioinorganique (LCBB) Institut de Chimie Moléculaire et des Matériaux d’Orsay (ICMMO) UMR 8182 CNRS Univ Paris Sud, Université Paris-Saclay, Orsay 91405 Cedex, France
| | - Virginie Dubosclard
- Laboratoire de Chimie Bioorganique et Bioinorganique (LCBB) Institut de Chimie Moléculaire et des Matériaux d’Orsay (ICMMO) UMR 8182 CNRS Univ Paris Sud, Université Paris-Saclay, Orsay 91405 Cedex, France
| | - Arne Wick
- Laboratoire de Chimie Bioorganique et Bioinorganique (LCBB) Institut de Chimie Moléculaire et des Matériaux d’Orsay (ICMMO) UMR 8182 CNRS Univ Paris Sud, Université Paris-Saclay, Orsay 91405 Cedex, France
| | - Audrey Bendelac
- Laboratoire de Chimie Bioorganique et Bioinorganique (LCBB) Institut de Chimie Moléculaire et des Matériaux d’Orsay (ICMMO) UMR 8182 CNRS Univ Paris Sud, Université Paris-Saclay, Orsay 91405 Cedex, France
| | - Régis Guillot
- Laboratoire de Chimie Bioorganique et Bioinorganique (LCBB) Institut de Chimie Moléculaire et des Matériaux d’Orsay (ICMMO) UMR 8182 CNRS Univ Paris Sud, Université Paris-Saclay, Orsay 91405 Cedex, France
| | - Rémy Ricoux
- Laboratoire de Chimie Bioorganique et Bioinorganique (LCBB) Institut de Chimie Moléculaire et des Matériaux d’Orsay (ICMMO) UMR 8182 CNRS Univ Paris Sud, Université Paris-Saclay, Orsay 91405 Cedex, France
| | - Jean-Pierre Mahy
- Laboratoire de Chimie Bioorganique et Bioinorganique (LCBB) Institut de Chimie Moléculaire et des Matériaux d’Orsay (ICMMO) UMR 8182 CNRS Univ Paris Sud, Université Paris-Saclay, Orsay 91405 Cedex, France
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22
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Cheng HM, Yuan H, Wang XJ, Xu JK, Gao SQ, Wen GB, Tan X, Lin YW. Formation of Cys-heme cross-link in K42C myoglobin under reductive conditions with molecular oxygen. J Inorg Biochem 2018; 182:141-149. [PMID: 29477977 DOI: 10.1016/j.jinorgbio.2018.02.011] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2018] [Revised: 02/04/2018] [Accepted: 02/13/2018] [Indexed: 12/13/2022]
Abstract
The structure and function of heme proteins are regulated by diverse post-translational modifications including heme-protein cross-links, with the underlying mechanisms not well understood. In this study, we introduced a Cys (K42C) close to the heme 4-vinyl group in sperm whale myoglobin (Mb) and solved its X-ray crystal structure. Interestingly, we found that K42C Mb can partially form a Cys-heme cross-link (termed K42C Mb-X) under dithiothreitol-induced reductive conditions in presence of O2, as suggested by guanidine hydrochloride-induced unfolding and heme extraction studies. Mass spectrometry (MS) studies, together with trypsin digestion studies, further indicated that a thioether bond is formed between Cys42 and the heme 4-vinyl group with an additional mass of 16 Da, likely due to hydroxylation of the α‑carbon. We then proposed a plausible mechanism for the formation of the novel Cys-heme cross-link based on MS, kinetic UV-vis and electron paramagnetic resonance (EPR) studies. Moreover, the Cys-heme cross-link was shown to fine-tune the protein reactivity toward activation of H2O2. This study provides valuable insights into the post-translational modification of heme proteins, and also suggests that the Cys-heme cross-link can be induced to form in vitro, making it useful for design of new heme proteins with a non-dissociable heme and improved functions.
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Affiliation(s)
- Hui-Min Cheng
- School of Chemistry and Chemical Engineering, University of South China, Hengyang 421001, China
| | - Hong Yuan
- Department of Chemistry, Shanghai Key Lab of Chemical Biology for Protein Research & Institute of Biomedical Science, Fudan University, Shanghai 200433, China
| | - Xiao-Juan Wang
- School of Chemistry and Chemical Engineering, University of South China, Hengyang 421001, China
| | - Jia-Kun Xu
- Yellow Sea Fisheries Research Institute, Qingdao 266071, China
| | - Shu-Qin Gao
- Lab of Protein Structure and Function, University of South China, Hengyang 421001, China
| | - Ge-Bo Wen
- Lab of Protein Structure and Function, University of South China, Hengyang 421001, China
| | - Xiangshi Tan
- Department of Chemistry, Shanghai Key Lab of Chemical Biology for Protein Research & Institute of Biomedical Science, Fudan University, Shanghai 200433, China
| | - Ying-Wu Lin
- School of Chemistry and Chemical Engineering, University of South China, Hengyang 421001, China; Lab of Protein Structure and Function, University of South China, Hengyang 421001, China.
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23
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Yu Y, Hu C, Xia L, Wang J. Artificial Metalloenzyme Design with Unnatural Amino Acids and Non-Native Cofactors. ACS Catal 2018. [DOI: 10.1021/acscatal.7b03754] [Citation(s) in RCA: 65] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Yang Yu
- Tianjin
Institute of Industrial Biotechnology, Chinese Academy of Sciences, 32 West Seventh Avenue, Tianjin Airport Economic Area, Tianjin 300308, China
| | - Cheng Hu
- Laboratory
of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, Beijing 100101, China
| | - Lin Xia
- Center
for Synthetic Biology Engineering Research, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, Guangdong 518055, China
| | - Jiangyun Wang
- Laboratory
of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, Beijing 100101, China
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24
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Li F, Li X, Zhang X. Dynamic Diels–Alder reactions of maleimide–furan amphiphiles and their fluorescence ON/OFF behaviours. Org Biomol Chem 2018; 16:7871-7877. [DOI: 10.1039/c8ob01944d] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
Dynamic Diels–Alder additions of maleimide–furan amphiphiles lead to reversible fluorescence ON/OFF behaviours and exchange of furan moieties.
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Affiliation(s)
- Fen Li
- School of Chemical Engineering and Technology
- Tianjin University
- Tianjin
- China
| | - Xiaohui Li
- School of Chemical Engineering and Technology
- Tianjin University
- Tianjin
- China
| | - Xin Zhang
- School of Chemical Engineering and Technology
- Tianjin University
- Tianjin
- China
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25
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Design of artificial metalloproteins/metalloenzymes by tuning noncovalent interactions. J Biol Inorg Chem 2017; 23:7-25. [DOI: 10.1007/s00775-017-1506-8] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2017] [Accepted: 09/20/2017] [Indexed: 12/12/2022]
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