Pure rotational and rovibrational spectroscopy of cyclopropylamine in the far-infrared region: -NH2 torsion

The pure rotational and rovibrational spectra of the ν27 -NH2 torsion of cyclopropylamine (CPA) in the far-infrared region were measured with a high-resolution Fourier transform infrared coupled to a synchrotron. The complex spectra reflect the presence of both trans and gauche conformers. Analysis of the pure rotational spectra (34-64 cm-1) yielded accurate rotational and centrifugal distortion constants of the ground and first two torsional excited states of trans-CPA. The fundamental, hot bands and weak overtones were identified and assigned in the 200-550 cm-1 range. Global analysis of over 19 000 transitions provides accurate energy levels of the torsional polyads up to vT = 3. The torsional levels and their rotational constants were in agreement with the theoretical results from quasiadiabatic channel reaction path Hamiltonian (RPH) calculations, emphasizing the need for molecular-specific theoretical treatments for large amplitude motions. Tunneling components of the torsional fundamental of gauche-CPA were assigned based on the RPH results and symmetry considerations, differing from previous experimental and theoretical work. This comprehensive spectroscopic characterization of CPA is crucial for its potential detection in the interstellar medium as a precursor to complex prebiotic molecules, providing essential data for future astronomical searches and advancing our understanding of nitrogen-containing organic molecules in space.

Vibrational Circular Dichroism of a Chiral Triplet Nitrene Investigated Under Matrix-Isolation Conditions in Parahydrogen

Vibrational circular dichroism (VCD) spectra of chiral high-spin organic radicals are expected to show a strong intensity enhancement and are thought to be difficult to predict using state-of-the-art theoretical methods. Herein we show that the chiral triplet nitrene obtained from photochemical cleavage of N2 from enantiopure 2-azido-9H-fluorenol does not feature extraordinarily strong intensities and that the experimental spectra match nicely with calculated ones. Thereby, this study demonstrates the general feasibility of studies on chiral high-spin organics by matrix-isolation VCD.

Carbon Atom Condensation on NH3-H2O Ices. An Alternative Pathway to Interstellar Methanimine and Methylamine

The recent discovery of the nature and behavior of carbon atoms interacting with interstellar ices has prompted a number of investigations on the chemistry initiated by carbon accretion on icy interstellar dust. In this work, we expand the range of processes promoted by carbon accretion to the chemistry initiated by the interaction of this atom with ammonia (NH3) using quantum chemical calculations. We found that carbon addition to the ammonia molecule forms a rather stable radical, CNH3, that is easily hydrogenated. The complete hydrogenation network is later studied. Our calculations reveal that while conversion to simpler molecules like HCN and HNC is indeed a possible outcome promoted by H-abstraction reactions, methylamine is also easily formed (CH3NH2). In fact, the stability of methylamine against hydrogen abstraction makes this molecule the preferred product of the reaction network. Our results serve as a stepping stone toward the accurate modeling of C-addition reactions in realistic astrochemical kinetic models.

Cobalt(III)-containing penta-dentate "helmet"-type phthalogens: synthesis, solid-state structures and their thermal and electrochemical characterization

Treatment of unsubstituted and substituted phthalonitrile (1a-d) with appropriate equivalents of sodium methoxide and ammonia afforded the corresponding 1,3-diiminoisoindolines (2a-d), which were converted to cobalt(III)-containing penta-dentate "helmet"-type phthalogens (3a-d) by the reaction with CoCl2·6H2O as templating agent in the inert solvent 1,2,4-trichlorobenzene. The identities of 2a-d and 3a-d were established by elemental analysis, infrared spectroscopy (IR), nuclear magnetic resonance (NMR), and electrospray ionization mass spectrometry (ESI-MS). A computational study was performed to determine the most stable tautomeric form of 2a-c in the gas phase. The solid-state structures of 2b and 2c were determined by single crystal X-ray diffraction (SC-XRD) studies to confirm their existence in the stereoisomeric anti-form, which is aligned with quantum chemical computations. SC-XRD studies of 3a and 3b revealed a slightly distorted octahedral geometry around the CoIII ions which are coordinated by five N-donor atoms and one extra co-ligand, resulting in a coordination environment of CoN5Cl (3a) and CoN5O (3b), respectively. The thermal stabilities of 2a-d and 3a-d were investigated by thermogravimetric analysis (TGA) in the temperature range of 40-500 °C and 40-800 °C, respectively, revealing that 3a-d were converted to the parent cobalt(II)-containing phthalocyanines (4a-d), which was verified independently by furnace heating experiments. Moreover, the electrochemical behavior of 3a was studied exemplarily for the phthalogens by cyclic voltammetry and square wave voltammetry. This study showed that 4a (CoPc) is formed irreversibly by reducing 3a electrochemically.

Spectroscopic Study of [Mg, H, N, C, O] Species: Implications for the Astrochemical Magnesium Chemistry

Magnesium is an abundant metal element in space, and magnesium chemistry has vital importance in the evolution of interstellar medium (ISM) and circumstellar regions, such as the asymptotic giant branch star IRC+10216 where a variety of Mg compounds bearing H, C, N, and O have been detected and proposed as the important components in the gas-phase molecular clouds and solid-state dust grains. Herein, we report the formation and infrared spectroscopic characterization of the Mg-bearing molecules HMg, [Mg, N, C], [Mg, H, N, C], [Mg, N, C, O], and [Mg, H, N, C, O] from the reactions of Mg/Mg+ and the prebiotic isocyanic acid (HNCO) in the solid neon matrix. Based on their thermal diffusion and photochemical behavior, a complex reactivity landscape involving association, decomposition, and isomerization reactions of these Mg-bearing molecules is developed, which can not only help understand the chemical processes of the magnesium (iso)cyanides in astrochemistry but also provide implications on the presence of magnesium (iso)cyanates in the ISM and the chemical model for the dust grain surface reactions. It also provides a new paradigm of the key intermediate nature of the cationic complexes in the formation of neutral interstellar species.

Hydrogen Bonding Shuts Down Tunneling in Hydroxycarbenes: A Gas-Phase Study by Tandem-Mass Spectrometry, Infrared Ion Spectroscopy, and Theory

Hydroxycarbenes can be generated and structurally characterized in the gas phase by collision-induced decarboxylation of α-keto carboxylic acids, followed by infrared ion spectroscopy. Using this approach, we have shown earlier that quantum-mechanical hydrogen tunneling (QMHT) accounts for the isomerization of a charge-tagged phenylhydroxycarbene to the corresponding aldehyde in the gas phase and above room temperature. Herein, we report the results of our current study on aliphatic trialkylammonio-tagged systems. Quite unexpectedly, the flexible 3-(trimethylammonio)propylhydroxycarbene turned out to be stable─no H-shift to either aldehyde or enol occurred. As supported by density functional theory calculations, this novel QMHT inhibition is due to intramolecular H-bonding of a mildly acidic α-ammonio C-H bonds to the hydroxyl carbene's C-atom (C:···H-C). To further support this hypothesis, (4-quinuclidinyl)hydroxycarbenes were synthesized, whose rigid structure prevents this intramolecular H-bonding. The latter hydroxycarbenes underwent "regular" QMHT to the aldehyde at rates comparable to, e.g., methylhydroxycarbene studied by Schreiner et al. While QMHT has been shown for a number of biological H-shift processes, its inhibition by H-bonding disclosed here may serve for the stabilization of highly reactive intermediates such as carbenes, even as a mechanism for biasing intrinsic selectivity patterns.

Glycine Imine-The Elusive α-Imino Acid Intermediate in the Reductive Amination of Glyoxylic Acid

Simple unhindered aldimines tend to hydrolyze or oligomerize and are therefore spectroscopically not well characterized. Herein we report the formation and spectroscopic characterization of the simplest imino acid, namely glycine imine, by cryogenic matrix isolation IR and UV/Vis spectroscopy. Glycine imine forms after UV irradiation of 2-azidoacetic acid by N₂ extrusion in anti-(E,E)- and anti-(Z,Z)-conformation that can be photochemically interconverted. In matrix isolation pyrolysis experiments with 2-azidoacetic acid, glycine imine cannot be trapped as it further decarboxylates to aminomethylene. In aqueous solution glycine imine is hydrolyzed to hydroxy glycine and hydrated glyoxylic acid. At higher concentrations or in the presence of Fe^II SO₄ as a reducing agent glycine imine undergoes self-reduction by oxidative decarboxylation chemistry. Glycine imine may be seen as one of the key reaction intermediates connecting prebiotic amino acid and sugar formation chemistry.

Equilibrating parent aminomercaptocarbene and CO2 with 2-amino-2-thioxoacetic acid via heavy-atom quantum tunneling

The search for methods to bind CO2 and use it synthetically as a C1-building block under mild conditions is an ongoing endeavor of great urgency. The formation of heterocyclic carbene-carbon dioxide adducts occurs rapidly when the carbene is generated in solution in the presence of CO2. Here we demonstrate the reversible formation of a complex of the hitherto unreported aminomercaptocarbene (H2N-C̈-SH) with CO2 isolated in solid argon by photolysis of 2-amino-2-thioxoacetic acid. Remarkably, the complex disappears in the dark as deduced by time-dependent matrix infrared measurements, and equilibrates back to the covalently bound starting material. This kinetically excluded process below ca. 8 K is made possible through heavy-atom quantum mechanical tunneling, as also evident from density functional theory and ab initio computations at the CCSD(T)/cc-pVTZ level of theory. Our results provide insight into CO2 activation using a carbene and emphasize the role of quantum mechanical tunneling in organic processes, even involving heavy atoms.

Theoretical Investigation of Dissociation versus Intramolecular Rearrangements in Aminohydroxymethylene

Aminohydroxymethylene (H₂N-C̈-OH) is the simplest aminooxycarbene which is a heteroatom stabilized carbene. This highly reactive molecule was prepared in an Ar matrix in a recent experimental work. Unimolecular reactivity of this astrochemically important molecule was investigated and only fragmentations were identified contrary to the observations of both fragmentations and intramolecular rearrangements in other hydroxycarbenes. These rearrangement reactions form the corresponding imine and carbonyl compounds. In the present work, direct chemical dynamics simulations of unimolecular chemistry of aminohydroxymethylene were performed in the gas phase to study atomic level dissociation mechanisms. Classical trajectories were generated on-the-fly using potentials and gradients computed at the density functional B3LYP/6-31+G* level of electronic structure theory. Simulation results showed that intramolecular rearrangements accompany fragmentations during the unimolecular decay process of aminohydroxymethylene. However, the average lifetime of the intermediate isomers were found to be only few picoseconds which might not have been long enough for detection in the experiments.

Hydroxy Mercapto Methylene: The Missing H2CSO Isomer

We report the isolation of hydroxy mercapto methylene (HO-C̈-SH) under cryogenic conditions via pyrolysis of 2-ethoxy-2-thioxo-acetic acid. The two most stable carbene rotamers form via extrusion of ethylene and CO₂ from this precursor. This donor-stabilized carbene represents a hitherto uncharacterized CH₂SO species and the first spectroscopically characterized free mercapto carbene. CCSD(T)/cc-pVTZ computations support our findings.

Gas-phase identification of (Z)-1,2-ethenediol, a key prebiotic intermediate in the formose reaction

Prebiotic sugars are thought to be formed on primitive Earth by the formose reaction. However, their formation is not fully understood and it is plausible that key intermediates could have formed in extraterrestrial environments and subsequently delivered on early Earth by cometary bodies. 1,2-Ethenediol, the enol form of glycolaldehyde, represents a highly reactive intermediate of the formose reaction and is likely detectable in the interstellar medium. Here, we report the identification and first characterization of (Z)-1,2-ethenediol by means of rotational spectroscopy. The title compound has been produced in the gas phase by flash vacuum pyrolysis of bis-exo-5-norbornene-2,3-diol at 750 °C, through a retro-Diels-Alder reaction. The spectral analysis was guided by high-level quantum-chemical calculations, which predicted spectroscopic parameters in very good agreement with the experiment. Our study provides accurate spectral data to be used for searches of (Z)-1,2-ethenediol in the interstellar space.

Substituent Effects on Aluminyl Anions and Derived Systems: A High-Level Theory

Aluminyl anions are low-valent aluminum species bearing a lone pair of electrons and a negative charge. These systems have drawn recent synthetic interest for their nucleophilic nature, allowing for the activation of σ-bonds, and have been proposed as a pathway to hydrogen energy storage. In this research, we provide high-level ab initio geometries and energies for both the simplest aluminyl anion (AlH₂^-) and several substituted derivatives. Geometries are reported using the gold-standard CCSD(T)/aug-cc-pV(T+d)Z level of theory. Energies were extrapolated to the complete basis set limit through the focal point approach, utilizing coupled-cluster methods through perturbative quadruples and basis sets up to five-ζ quality. Geometries were rationalized using electrostatic, steric, and orbital donation effects. The donation from substituents to Al is accompanied by back-donation effects, a property traditionally thought of in transition-metal systems. Stereoelectronic effects through the secondary orbital interaction play a fundamental role in stabilizing these low-valent aluminum compounds and would likely also affect the feasibility of their use within several industrial applications. The energetic analysis of the formation of each substituted anion is rationalized as the result of three energetic schemes. The effectiveness of these schemes for determining the relative formation energies is discussed.

Directed Gas-Phase Formation of Aminosilylene (HSiNH2; 1A'): The Simplest Silicon Analogue of an Aminocarbene, under Single-Collision Conditions

The aminosilylene molecule (HSiNH₂, X¹A')-the simplest representative of an unsaturated nitrogen-silylene-has been formed under single collision conditions via the gas phase elementary reaction involving the silylidyne radical (SiH) and ammonia (NH₃). The reaction is initiated by the barrierless addition of the silylidyne radical to the nonbonding electron pair of nitrogen forming an HSiNH₃ collision complex, which then undergoes unimolecular decomposition to aminosilylene (HSiNH₂) via atomic hydrogen loss from the nitrogen atom. Compared to the isovalent aminomethylene carbene (HCNH₂, X¹A'), by replacing a single carbon atom with silicon, a profound effect on the stability and chemical bonding of the isovalent methanimine (H₂CNH)-aminomethylene (HNCH₂) and aminosilylene (HSiNH₂)-silanimine (H₂SiNH) isomer pairs is shown; i.e., thermodynamical stabilities of the carbene versus silylene are reversed by 220 kJ mol^-1. Hence, the isovalency of the main group XIV element silicon was found to exhibit little similarities with the atomic carbon revealing a remarkable effect not only on the reactivity but also on the thermochemistry and chemical bonding.

Aminohydroxymethylene (H2N-C̈-OH), the Simplest Aminooxycarbene

We generated and isolated hitherto unreported aminohydroxymethylene (1, aminohydroxycarbene) in solid Ar via pyrolysis of oxalic acid monoamide (2). Astrochemically relevant carbene 1 is persistent under cryogenic conditions and only decomposes to HNCO + H₂ and NH₃ + CO upon irradiation of the matrix at 254 nm. This photoreactivity is contrary to other hydroxycarbenes and aminomethylene, which undergo [1,2]H shifts to the corresponding carbonyls or imine. The experimental data are well supported by the results of CCSD(T)/cc-pVTZ and B3LYP/6-311++G(3df,3pd) computations.

1,1,2-Ethenetriol: The Enol of Glycolic Acid, a High-Energy Prebiotic Molecule

As low‐temperature conditions (e.g. in space) prohibit reactions requiring large activation energies, an alternative mechanism for follow‐up transformations of highly stable molecules involves the reactions of higher energy isomers that were generated in a different environment. Hence, one working model for the formation of larger organic molecules is their generation from high‐lying isomers of otherwise rather stable molecules. As an example, we present here the synthesis as well as IR and UV/Vis spectroscopic identification of the previously elusive 1,1,2‐ethenetriol, the higher energy enol tautomer of glycolic acid, a rather stable and hence unreactive biological building block. The title compound was generated in the gas phase by flash vacuum pyrolysis of tartronic acid at 400 °C and was subsequently trapped in argon matrices at 10 K. The spectral assignments are supported by B3LYP/6–311++G(2d,2p) computations. Upon photolysis at λ=180–254 nm, 1,1,2‐ethenetriol rearranges to glycolic acid and ketene.

Preparation and characterization of the enol of acetamide: 1-aminoethenol, a high-energy prebiotic molecule

Amide tautomers, which constitute the higher-energy amide bond linkage, not only are key for a variety of biological but also prebiotic processes. In this work, we present the gas-phase synthesis of 1-aminoethenol, the higher-energy tautomer of acetamide, that has not been spectroscopically identified to date. The title compound was prepared by flash vacuum pyrolysis of malonamic acid and was characterized employing matrix isolation infrared as well as ultraviolet/visible spectroscopy. Coupled-cluster computations at the AE-CCSD(T)/cc-pVTZ level of theory support the spectroscopic assignments. Upon photolysis at λ > 270 nm, the enol rearranges to acetamide as well as ketene and ammonia. As the latter two are even higher in energy, they constitute viable starting materials for formation of the title compound.

Bootstrap Embedding For Large Molecular Systems

Recent developments in quantum embedding theories have provided attractive approaches to correlated calculations for large systems. In this work, we extend our previous work [J. Chem. Theory Comput. 2019, 15, 4497-4506; J. Phys. Chem. Lett. 2019, 10, 6368-6374] on bootstrap embedding (BE) to enable correlated ab initio calculations at the coupled cluster with singles and doubles (CCSD) level for large molecules. We introduce several new algorithmic developments that significantly reduce the computational cost of BE, while maintaining its accuracy. The resulting implementation scales as O(N³) for the integral transform and O(N) for the CCSD calculation. Numerical results on a series of conjugated molecules suggest that BE with reasonably sized fragments can recover more than 99.5% of the total correlation energy of a full CCSD calculation, while the required computational resources (time and storage) compare favorably to one popular local correlation scheme: domain localized pair natural orbital (DLPNO). The largest BE calculation in this work involves ∼2900 basis functions and can be performed on a single node with 16 CPU cores and 64 GB of memory in a few days. We anticipate that these developments represent an important step toward the application of BE to solve practical problems.

Relatives of cyanomethylene: replacement of the divalent carbon by B-, N+, Al-, Si, P+, Ga-, Ge, and As. Phys Chem Chem Phys 2019;21:26438-26452. [PMID: 31774089 DOI: 10.1039/c9cp05777c]

The lowest lying singlet and triplet states of HBCN-, HCCN, HNCN+, HAlCN-, HSiCN, HPCN+, HGaCN-, HGeCN, and HAsCN+ were studied using the CCSDT(Q)/CBS//CCSD(T)/aug-cc-pVQZ level of theory. Periodic trends in geometries, singlet-triplet gaps, and barriers to linearity were established and analyzed. The first row increasingly favors the triplet state, with a singlet-triplet gap (ΔEST = Esinglet - Etriplet) of 3.5 kcal mol-1, 11.9 kcal mol-1, and 22.6 kcal mol-1, respectively, for HBCN-, HCCN, and HNCN+. The second row increasing favors the singlet state, with singlet-triplet gaps of -20.4 kcal mol-1 (HAlCN-), -26.6 kcal mol-1 (HSiCN), and -26.8 kcal mol-1 (HPCN+). The third row also favors the singlet state, with singlet-triplet gaps of -26.8 kcal mol-1 (HGaCN-), -33.5 kcal mol-1 (HGeCN), and -33.1 kcal mol-1 (HAsCN+). The HXCN species have larger absolute singlet-triplet energy gaps compared to their parent species XH2 except for the case of X = N+. The effect of the substitution of hydrogen with a cyano group was analyzed with isodesmic bond separation analysis and NBO.

General Cyclopropane Assembly by Enantioselective Transfer of a Redox-Active Carbene to Aliphatic Olefins

Asymmetric cyclopropane synthesis currently requires bespoke strategies, methods, substrates, and reagents, even when targeting similar compounds. This approach slows down discovery and limits available chemical space. Introduced herein is a practical and versatile diazocompound and its performance in the first unified asymmetric synthesis of functionalized cyclopropanes. The redox-active leaving group in this reagent enhances the reactivity and selectivity of geminal carbene transfer. This effect allowed the asymmetric cyclopropanation of various olefins, including unfunctionalized aliphatic alkenes, that enables the three-step total synthesis of (-)-dictyopterene A. This unified synthetic approach delivers high enantioselectivities that are independent of the stereoelectronic properties of the functional groups transferred. Our results demonstrate that orthogonally differentiated diazocompounds are viable and advantageous equivalents of single-carbon chirons.

Conformer-specific [1,2]H-tunnelling in captodatively-stabilized cyanohydroxycarbene (NC-C[combining umlaut]-OH)

We report the gas-phase preparation of cyanohydroxycarbene by high-vacuum flash pyrolysis of ethyl 2-cyano-2-oxoacetate and subsequent trapping of the pyrolysate in an inert argon matrix at 3 K. After irradiation of the matrix with green light for a few seconds singlet trans-cyanohydroxycarbene rearranges to its cis-conformer. Prolonged irradiation leads to the formation of cyanoformaldehyde and isomeric isocyanoformaldehyde. Cis- and trans-cyanohydroxycarbene were characterized by matching matrix IR and UV/Vis spectroscopic data with ab initio coupled cluster and TD-DFT computations. Trans-cyanohydroxycarbene undergoes a conformer-specific [1,2]H-tunnelling reaction through a 33.3 kcal mol-1 barrier (the highest penetrated barrier of all H-tunnelling reactions observed to date) to cyanoformaldehyde with a half-life of 23.5 ± 0.5 d; this is the longest half-life reported for an H-tunnelling process to date. During the tunnelling reaction the cis-conformer remains unchanged over the same period of time and the Curtin-Hammett principle does not apply. NIR irradiation of the O-H stretching overtone does not enhance the tunnelling rate via vibrational activation. Push-pull stabilisation of hydroxycarbenes through σ- and π-withdrawing groups therefore is even more stabilizing than push-push substitution.