1
|
Vogl DP, Mateos B, Migotti M, Felkl M, Conibear AC, Konrat R, Becker CFW. Semisynthesis of segmentally isotope-labeled and site-specifically palmitoylated CD44 cytoplasmic tail. Bioorg Med Chem 2024; 100:117617. [PMID: 38306881 DOI: 10.1016/j.bmc.2024.117617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Revised: 01/19/2024] [Accepted: 01/26/2024] [Indexed: 02/04/2024]
Abstract
CD44, a ubiquitously expressed transmembrane receptor, plays a crucial role in cell growth, migration, and tumor progression. Dimerization of CD44 is a key event in signal transduction and has emerged as a potential target for anti-tumor therapies. Palmitoylation, a posttranslational modification, disrupts CD44 dimerization and promotes CD44 accumulation in ordered membrane domains. However, the effects of palmitoylation on the structure and dynamics of CD44 at atomic resolution remain poorly understood. Here, we present a semisynthetic approach combining solid-phase peptide synthesis, recombinant expression, and native chemical ligation to investigate the impact of palmitoylation on the cytoplasmic domain (residues 669-742) of CD44 (CD44ct) by NMR spectroscopy. A segmentally isotope-labeled and site-specifically palmitoylated CD44 variant enabled NMR studies, which revealed chemical shift perturbations and indicated local and long-range conformational changes induced by palmitoylation. The long-range effects suggest altered intramolecular interactions and potential modulation of membrane association patterns. Semisynthetic, palmitoylated CD44ct serves as the basis for studying CD44 clustering, conformational changes, and localization within lipid rafts, and could be used to investigate its role as a tumor suppressor and to explore its therapeutic potential.
Collapse
Affiliation(s)
- Dominik P Vogl
- University of Vienna, Faculty of Chemistry, Institute of Biological Chemistry, Währinger Str. 38, 1090 Vienna, Austria; University of Vienna, Vienna Doctoral School in Chemistry (DoSChem), Währinger Str. 42, 1090 Vienna, Austria
| | - Borja Mateos
- Max Perutz Laboratories, Vienna Biocenter Campus 5, 1030 Vienna, Austria
| | - Mario Migotti
- Max Perutz Laboratories, Vienna Biocenter Campus 5, 1030 Vienna, Austria; Vienna BioCenter PhD Program, Doctoral School of the University of Vienna and Medical University of Vienna, A-1030 Vienna, Austria
| | - Manuel Felkl
- University of Vienna, Faculty of Chemistry, Institute of Biological Chemistry, Währinger Str. 38, 1090 Vienna, Austria
| | - Anne C Conibear
- TU Wien, Institute of Applied Synthetic Chemistry, Getreidemarkt 9, 1060 Vienna, Austria
| | - Robert Konrat
- Max Perutz Laboratories, Vienna Biocenter Campus 5, 1030 Vienna, Austria
| | - Christian F W Becker
- University of Vienna, Vienna Doctoral School in Chemistry (DoSChem), Währinger Str. 42, 1090 Vienna, Austria.
| |
Collapse
|
2
|
Chien MC, Lin YK, Liao Y, Chen SH, Chen YW, Liang CY, Molakaseema V, Hsu SCN, Lin CC, Chen HT, Kao CL. One-Step Synthesis of 3-(Fmoc-amino acid)-3,4-diaminobenzoic Acids. ACS OMEGA 2023; 8:41855-41864. [PMID: 37970022 PMCID: PMC10634083 DOI: 10.1021/acsomega.3c06640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/06/2023] [Revised: 09/30/2023] [Accepted: 10/03/2023] [Indexed: 11/17/2023]
Abstract
A one-step method for synthesizing 3-(Fmoc-amino acid)-3,4-diaminobenzoic acids was used to prepare preloaded diaminobenzoate resin. The coupling of free diaminobenzoic acid and Fmoc-amino acids gave pure products in 40-94% yield without any purification step in addition to precipitation except for histidine. For the proline residue, crude products were collected and used for solid-phase peptide synthesis to give a moderate yield of a pentapeptide. In addition, this method was used to prepare unusual amino acid derivatives, namely, (2-naphthyl) alanine and 6-aminohexanoic acid derivatives, in 50 and 65% yield, respectively.
Collapse
Affiliation(s)
- Min-Cheng Chien
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
| | - Yi Kai Lin
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
| | - Yong Liao
- Department
of Pharmacy, National Yang Ming Chiao Tung
University, Taipei 112, Taiwan
| | - Szu-Hsuan Chen
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
| | - Yen-Wei Chen
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
| | - Chien-Yu Liang
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
| | - Vijayasimha Molakaseema
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
| | - Sodio C. N. Hsu
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
| | - Chun-Cheng Lin
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
- Department
of Chemistry, National Tsing Hua University, Hsinchu 30013, Taiwan
| | - Hui-Ting Chen
- Department
of Pharmacy, National Yang Ming Chiao Tung
University, Taipei 112, Taiwan
| | - Chai-Lin Kao
- Department
of Medicinal and Applied Chemistry, Kaohsiung
Medical University, Kaohsiung 807, Taiwan
- Department
of Medical Research, Kaohsiung Medical University
Hospital, Kaohsiung 807, Taiwan
- Drug
Development and Value Creation Research Center, Kaohsiung Medical University, Kaohsiung 807, Taiwan
- Department
of Chemistry, National Sun Yat-sen University, Kaohsiung 80424, Taiwan
- College
of Professional Studies, National Pingtung
University of Science and Technology, Pingtung 912, Taiwan
| |
Collapse
|
3
|
Nakatsu K, Okamoto A, Hayashi G, Murakami H. Repetitive Thiazolidine Deprotection Using a Thioester‐Compatible Aldehyde Scavenger for One‐Pot Multiple Peptide Ligation**. Angew Chem Int Ed Engl 2022; 61:e202206240. [DOI: 10.1002/anie.202206240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Indexed: 11/10/2022]
Affiliation(s)
- Koki Nakatsu
- Department of Biomolecular Engineering Graduate School of Engineering Nagoya University Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Akimitsu Okamoto
- Department of Chemistry and Biotechnology Graduate School of Engineering The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-8656 Japan
- Research Center for Advanced Science and Technology The University of Tokyo 4-6-1 Komaba Meguro-ku Tokyo 153-8904 Japan
| | - Gosuke Hayashi
- Department of Biomolecular Engineering Graduate School of Engineering Nagoya University Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| | - Hiroshi Murakami
- Department of Biomolecular Engineering Graduate School of Engineering Nagoya University Furo-cho Chikusa-ku Nagoya 464-8603 Japan
- Institute of Nano-Life-Systems Institutes of Innovation for Future Society Nagoya University Furo-cho Chikusa-ku Nagoya 464-8603 Japan
| |
Collapse
|
4
|
Sánchez-Campillo I, Miguel-Gracia J, Karamanis P, Blanco-Canosa JB. A versatile o-aminoanilide linker for native chemical ligation. Chem Sci 2022; 13:10904-10913. [PMID: 36320694 PMCID: PMC9491214 DOI: 10.1039/d2sc04158h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2022] [Accepted: 08/25/2022] [Indexed: 12/04/2022] Open
Abstract
Chemical protein synthesis (CPS) is a consolidated field founded on the high chemospecificity of amide-forming reactions, most notably the native chemical ligation (NCL), but also on new technologies such as the Ser/Thr ligation of C-terminal salicylaldehyde esters and the α-ketoacid-hydroxylamine (KAHA) condensation. NCL was conceptually devised for the ligation of peptides having a C-terminal thioester and an N-terminal cysteine. The synthesis of C-terminal peptide thioesters has attracted a lot of interest, resulting in the invention of a wide diversity of different methods for their preparation. The N-acylurea (Nbz) approach relies on the use of the 3,4-diaminobenzoic (Dbz-COOH) and the 3-amino-(4-methylamino)benzoic (MeDbz-COOH) acids; the latter disclosed to eliminate the formation of branching peptides. Dbz-COOH has been also used for the development of the benzotriazole (Bt)-mediated NCL, in which the peptide-Dbz-CONH2 precursor is oxidized to a highly acylating peptide-Bt-CONH2 species. Here, we have brought together the Nbz and Bt approaches in a versatile linker, the 1,2-diaminobenzene (Dbz). The Dbz combines the robustness of MeDbz-COOH and the flexibility of Dbz-COOH: it can be converted into the Nbz or Bt C-terminal peptides. Both are ligated in high yields, and the reaction intermediates can be conveniently characterized. Our results show that the Bt precursors have faster NCL kinetics that is reflected by a rapid transthioesterification (<5 min). Taking advantage of this major acylating capacity, peptide-Bt can be transselenoesterified in the presence of selenols to afford peptide selenoesters which hold enormous potential in NCL.
Collapse
Affiliation(s)
- Iván Sánchez-Campillo
- Institute for Advanced Chemistry of Catalonia (IQAC-CSIC) Jordi Girona 18-26 08034 Barcelona Spain
| | - Judit Miguel-Gracia
- Institute for Advanced Chemistry of Catalonia (IQAC-CSIC) Jordi Girona 18-26 08034 Barcelona Spain
| | - Periklis Karamanis
- Dept. of Chemistry "G. Ciamician", University of Bologna Via Selmi 2 40126 Bologna Italy
| | - Juan B Blanco-Canosa
- Institute for Advanced Chemistry of Catalonia (IQAC-CSIC) Jordi Girona 18-26 08034 Barcelona Spain
| |
Collapse
|
5
|
Hayashi G, Nakatsu K, Okamoto A, Murakami H. Repetitive Thiazolidine Deprotection Using a Thioester‐Compatible Aldehyde Scavenger for One‐Pot Multiple Peptide Ligation. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202206240] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Gosuke Hayashi
- Nagoya University Graduate School of Engineering School of Engineering: Nagoya Daigaku Kogakubu Daigakuin Kogaku Kenkyuka Biomolecular Engineering Furo-choChikusa-ku 464-8603 Nagoya JAPAN
| | - Koki Nakatsu
- Nagoya University Graduate School of Engineering School of Engineering: Nagoya Daigaku Kogakubu Daigakuin Kogaku Kenkyuka Biomolecular Engineering JAPAN
| | - Akimitsu Okamoto
- The University of Tokyo Graduate School of Engineering Faculty of Engineering: Tokyo Daigaku Daigakuin Kogakukei Kenkyuka Kogakubu Chemistry and Biotechnology JAPAN
| | - Hiroshi Murakami
- Nagoya University Graduate School of Engineering School of Engineering: Nagoya Daigaku Kogakubu Daigakuin Kogaku Kenkyuka Biomolecular Engineering JAPAN
| |
Collapse
|
6
|
Hanna CC, Kriegesmann J, Dowman LJ, Becker CFW, Payne RJ. Chemical Synthesis and Semisynthesis of Lipidated Proteins. Angew Chem Int Ed Engl 2022; 61:e202111266. [PMID: 34611966 PMCID: PMC9303669 DOI: 10.1002/anie.202111266] [Citation(s) in RCA: 17] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Indexed: 11/24/2022]
Abstract
Lipidation is a ubiquitous modification of peptides and proteins that can occur either co- or post-translationally. An array of different lipid classes can adorn proteins and has been shown to influence a number of crucial biological activities, including the regulation of signaling, cell-cell adhesion events, and the anchoring of proteins to lipid rafts and phospholipid membranes. Whereas nature employs a range of enzymes to install lipid modifications onto proteins, the use of these for the chemoenzymatic generation of lipidated proteins is often inefficient or impractical. An alternative is to harness the power of modern synthetic and semisynthetic technologies to access lipid-modified proteins in a pure and homogeneously modified form. This Review aims to highlight significant advances in the development of lipidation and ligation chemistry and their implementation in the synthesis and semisynthesis of homogeneous lipidated proteins that have enabled the influence of these modifications on protein structure and function to be uncovered.
Collapse
Affiliation(s)
- Cameron C. Hanna
- School of ChemistryThe University of SydneySydneyNSW2006Australia
| | - Julia Kriegesmann
- Institute of Biological ChemistryFaculty of ChemistryUniversity of ViennaViennaAustria
| | - Luke J. Dowman
- School of ChemistryThe University of SydneySydneyNSW2006Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceThe University of SydneySydneyNSW2006Australia
| | | | - Richard J. Payne
- School of ChemistryThe University of SydneySydneyNSW2006Australia
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceThe University of SydneySydneyNSW2006Australia
| |
Collapse
|
7
|
Hanna CC, Kriegesmann J, Dowman LJ, Becker CFW, Payne RJ. Chemische Synthese und Semisynthese von lipidierten Proteinen. ANGEWANDTE CHEMIE (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2022; 134:e202111266. [PMID: 38504765 PMCID: PMC10947004 DOI: 10.1002/ange.202111266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/20/2021] [Indexed: 11/11/2022]
Abstract
AbstractLipidierung ist eine ubiquitäre Modifikation von Peptiden und Proteinen, die entweder co‐ oder posttranslational auftreten kann. Für die Vielzahl von Lipidklassen wurde gezeigt, dass diese viele entscheidende biologische Aktivitäten, z. B. die Regulierung der Signalweiterleitung, Zell‐Zell‐Adhäsion sowie die Anlagerung von Proteinen an Lipid‐Rafts und Phospholipidmembranen, beeinflussen. Während die Natur Enzyme nutzt, um Lipidmodifikationen in Proteine einzubringen, ist ihre Nutzung für die chemoenzymatische Herstellung von lipidierten Proteinen häufig ineffizient. Eine Alternative ist die Kombination moderner synthetischer und semisynthetischer Techniken, um lipidierte Proteine in reiner und homogen modifizierter Form zu erhalten. Dieser Aufsatz erörtert Fortschritte in der Entwicklung der Lipidierungs‐ und Ligationschemie und deren Anwendung in der Synthese und Semisynthese homogen lipidierter Proteine, die es ermöglichen, den Einfluss dieser Modifikationen auf die Proteinstruktur und ‐funktion zu untersuchen.
Collapse
Affiliation(s)
- Cameron C. Hanna
- School of ChemistryThe University of SydneySydneyNSW2006Australien
| | - Julia Kriegesmann
- Institut für Biologische ChemieFakultät für ChemieUniversität WienWienÖsterreich
| | - Luke J. Dowman
- School of ChemistryThe University of SydneySydneyNSW2006Australien
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceThe University of SydneySydneyNSW2006Australien
| | | | - Richard J. Payne
- School of ChemistryThe University of SydneySydneyNSW2006Australien
- Australian Research Council Centre of Excellence for Innovations in Peptide and Protein ScienceThe University of SydneySydneyNSW2006Australien
| |
Collapse
|
8
|
Garst EH, Das T, Hang HC. Chemical approaches for investigating site-specific protein S-fatty acylation. Curr Opin Chem Biol 2021; 65:109-117. [PMID: 34333222 PMCID: PMC8671186 DOI: 10.1016/j.cbpa.2021.06.004] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Revised: 06/09/2021] [Accepted: 06/18/2021] [Indexed: 12/27/2022]
Abstract
Protein S-fatty acylation or S-palmitoylation is a reversible and regulated lipid post-translational modification (PTM) in eukaryotes. Loss-of-function mutagenesis studies have suggested important roles for protein S-fatty acylation in many fundamental biological pathways in development, neurobiology, and immunity that are also associated with human diseases. However, the hydrophobicity and reversibility of this PTM have made site-specific gain-of-function studies more challenging to investigate. In this review, we summarize recent chemical biology approaches and methods that have enabled site-specific gain-of-function studies of protein S-fatty acylation and the investigation of the mechanisms and significance of this PTM in eukaryotic biology.
Collapse
Affiliation(s)
- Emma H Garst
- Laboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY 10065, United States; Tri-Institutional Ph.D. Program in Chemical Biology, New York, NY 10065, United States
| | - Tandrila Das
- Laboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY 10065, United States; Tri-Institutional Ph.D. Program in Chemical Biology, New York, NY 10065, United States
| | - Howard C Hang
- Laboratory of Chemical Biology and Microbial Pathogenesis, The Rockefeller University, New York, NY 10065, United States; Departments of Immunology and Microbiology and Chemistry, Scripps Research, La Jolla, CA 92037, United States.
| |
Collapse
|
9
|
Acosta GA, Murray L, Royo M, de la Torre BG, Albericio F. Solid-Phase Synthesis of Head to Side-Chain Tyr-Cyclodepsipeptides Through a Cyclative Cleavage From Fmoc-MeDbz/MeNbz-resins. Front Chem 2020; 8:298. [PMID: 32391324 PMCID: PMC7189019 DOI: 10.3389/fchem.2020.00298] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 03/25/2020] [Indexed: 12/16/2022] Open
Abstract
Cyclic depsipeptides constitute a fascinating class of natural products. Most of them are characterized by an ester formed between the β-hydroxy function of Ser/Thr -and related amino acids- and the carboxylic group of the C-terminal amino acid. Less frequent are those where the thiol of Cys is involved rendering a thioester (cyclo thiodepsipeptides) and even less common are the cyclo depsipeptides with a phenyl ester coming from the side-chain of Tyr. Herein, the preparation of the later through a cyclative cleavage using the Fmoc-MeDbz/MeNbz-resin is described. This resin has previously reported for the synthesis of cyclo thiodepsipeptides and homodetic peptides. The use of that resin for the preparation of all these peptides is also summarized.
Collapse
Affiliation(s)
- Gerardo A Acosta
- CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine, University of Barcelona (UB), Barcelona, Spain.,Department of Organic Chemistry, University of Barcelona, Barcelona, Spain.,Institute of Advanced Chemistry of Catalonia (IQAC-CSIC), Spanish National Research Council (CSIC), Barcelona, Spain.,Associated Unit, Spanish National Research Council-University of Barcelona (CSIC-UB), Barcelona, Spain
| | - Laura Murray
- CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine, University of Barcelona (UB), Barcelona, Spain.,Department of Organic Chemistry, University of Barcelona, Barcelona, Spain
| | - Miriam Royo
- Institute of Advanced Chemistry of Catalonia (IQAC-CSIC), Spanish National Research Council (CSIC), Barcelona, Spain.,Associated Unit, Spanish National Research Council-University of Barcelona (CSIC-UB), Barcelona, Spain
| | - Beatriz G de la Torre
- KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, South Africa.,Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban, South Africa
| | - Fernando Albericio
- CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine, University of Barcelona (UB), Barcelona, Spain.,Department of Organic Chemistry, University of Barcelona, Barcelona, Spain.,Institute of Advanced Chemistry of Catalonia (IQAC-CSIC), Spanish National Research Council (CSIC), Barcelona, Spain.,Associated Unit, Spanish National Research Council-University of Barcelona (CSIC-UB), Barcelona, Spain.,Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban, South Africa
| |
Collapse
|
10
|
Mechanism, origin of diastereoselectivity and factors affecting reaction efficiency of serine/threonine ligation: A computational study. Tetrahedron 2020. [DOI: 10.1016/j.tet.2020.131143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
11
|
Huang D, Montigny C, Zheng Y, Beswick V, Li Y, Cao X, Barbot T, Jaxel C, Liang J, Xue M, Tian C, Jamin N, Zheng J. Chemical Synthesis of Native S‐Palmitoylated Membrane Proteins through Removable‐Backbone‐Modification‐Assisted Ser/Thr Ligation. Angew Chem Int Ed Engl 2020; 59:5178-5184. [DOI: 10.1002/anie.201914836] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2019] [Indexed: 12/13/2022]
Affiliation(s)
- Dong‐Liang Huang
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Cédric Montigny
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Yong Zheng
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Veronica Beswick
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
- Department of PhysicsEvry-Val-d'Essonne University 91025 Evry France
| | - Ying Li
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Xiu‐Xiu Cao
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Thomas Barbot
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Christine Jaxel
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Jun Liang
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Min Xue
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Chang‐Lin Tian
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Nadège Jamin
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Ji‐Shen Zheng
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| |
Collapse
|
12
|
Huang D, Montigny C, Zheng Y, Beswick V, Li Y, Cao X, Barbot T, Jaxel C, Liang J, Xue M, Tian C, Jamin N, Zheng J. Chemical Synthesis of Native S‐Palmitoylated Membrane Proteins through Removable‐Backbone‐Modification‐Assisted Ser/Thr Ligation. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.201914836] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Dong‐Liang Huang
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Cédric Montigny
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Yong Zheng
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Veronica Beswick
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
- Department of PhysicsEvry-Val-d'Essonne University 91025 Evry France
| | - Ying Li
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Xiu‐Xiu Cao
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Thomas Barbot
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Christine Jaxel
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Jun Liang
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Min Xue
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Chang‐Lin Tian
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| | - Nadège Jamin
- Institute for Integrative Biology of the Cell (I2BC)CEACNRSUniversité Paris-SudUniversité Paris-Saclay 91198 Gif-sur-Yvette cedex France
| | - Ji‐Shen Zheng
- High Magnetic Field LaboratoryChinese Academy of Sciences and Hefei National Laboratory for Physical Sciences at the MicroscaleSchool of Life SciencesUniversity of Science and Technology of China Hefei 230027 China
| |
Collapse
|
13
|
Mannuthodikayil J, Singh S, Biswas A, Kar A, Tabassum W, Vydyam P, Bhattacharyya MK, Mandal K. Benzimidazolinone-Free Peptide o-Aminoanilides for Chemical Protein Synthesis. Org Lett 2019; 21:9040-9044. [PMID: 31663760 DOI: 10.1021/acs.orglett.9b03440] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The thioester surrogate 3,4-diaminobenzoic acid (Dbz) facilitates the efficient synthesis of peptide thioesters by Fmoc chemistry solid phase peptide synthesis and the optional attachment of a solubility tag at the C-terminus. The protection of the partially deactivated ortho-amine of Dbz is necessary to obtain contamination-free peptide synthesis. The reported carbamate protecting groups promote a serious side reaction, benzimidazolinone formation. Herein we introduce the Boc-protected Dbz that prevents the benzimidazolinone formation, leading to clean peptide o-aminoanilides suitable for the total chemical synthesis of proteins.
Collapse
Affiliation(s)
- Jamsad Mannuthodikayil
- TIFR Centre for Interdisciplinary Sciences , Tata Institute of Fundamental Research Hyderabad , 36/p Gopanpally , Hyderabad , Telangana 500107 , India
| | - Sameer Singh
- TIFR Centre for Interdisciplinary Sciences , Tata Institute of Fundamental Research Hyderabad , 36/p Gopanpally , Hyderabad , Telangana 500107 , India
| | - Anamika Biswas
- TIFR Centre for Interdisciplinary Sciences , Tata Institute of Fundamental Research Hyderabad , 36/p Gopanpally , Hyderabad , Telangana 500107 , India
| | - Abhisek Kar
- TIFR Centre for Interdisciplinary Sciences , Tata Institute of Fundamental Research Hyderabad , 36/p Gopanpally , Hyderabad , Telangana 500107 , India
| | - Wahida Tabassum
- Department of Biochemistry, School of Life Sciences , University of Hyderabad , Gachibowli, Hyderabad , Telangana 500046 , India
| | - Pratap Vydyam
- Department of Biochemistry, School of Life Sciences , University of Hyderabad , Gachibowli, Hyderabad , Telangana 500046 , India
| | - Mrinal Kanti Bhattacharyya
- Department of Biochemistry, School of Life Sciences , University of Hyderabad , Gachibowli, Hyderabad , Telangana 500046 , India
| | - Kalyaneswar Mandal
- TIFR Centre for Interdisciplinary Sciences , Tata Institute of Fundamental Research Hyderabad , 36/p Gopanpally , Hyderabad , Telangana 500107 , India
| |
Collapse
|
14
|
Zhang B, Deng Q, Zuo C, Yan B, Zuo C, Cao XX, Zhu TF, Zheng JS, Liu L. Ligation of Soluble but Unreactive Peptide Segments in the Chemical Synthesis of Haemophilus Influenzae DNA Ligase. Angew Chem Int Ed Engl 2019; 58:12231-12237. [PMID: 31250514 DOI: 10.1002/anie.201905149] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/25/2019] [Indexed: 01/28/2023]
Abstract
During the total chemical synthesis of the water-soluble globular Haemophilus Influenzae DNA ligase (Hin-Lig), we observed the surprising phenomenon of a soluble peptide segment that failed to undergo native chemical ligation. Based on dynamic light scattering and transmission electron microscopy experiments, we determined that the peptide formed soluble colloidal particles in a homogeneous solution containing 6 m guanidine hydrochloride. Conventional peptide performance-improving strategies, such as installation of a terminal/side-chain Arg tag or O-acyl isopeptide, failed to enable the reaction, presumably because of their inability to disrupt the formation of soluble colloidal particles. However, a removable backbone modification strategy recently developed for the synthesis of membrane proteins did disrupt the formation of the colloids, and the desired ligation of this soluble but unreactive system was eventually accomplished. This work demonstrates that an appropriate solution dispersion state, in addition to good peptide solubility, is a prerequisite for successful peptide ligation.
Collapse
Affiliation(s)
- Baochang Zhang
- Tsinghua-Peking Joint Center for Life Sciences, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Center for Synthetic and Systems Biology, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Qiang Deng
- School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Chong Zuo
- Tsinghua-Peking Joint Center for Life Sciences, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Center for Synthetic and Systems Biology, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Bingjia Yan
- Tsinghua-Peking Joint Center for Life Sciences, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Center for Synthetic and Systems Biology, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Chao Zuo
- Tsinghua-Peking Joint Center for Life Sciences, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Center for Synthetic and Systems Biology, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| | - Xiu-Xiu Cao
- School of Life Sciences, University of Science and Technology of China, and High Magnetic Field Laboratory, Chinese Academy of Sciences, Hefei, 230026, China
| | - Ting F Zhu
- School of Life Sciences, Tsinghua University, Beijing, 100084, China
| | - Ji-Shen Zheng
- School of Life Sciences, University of Science and Technology of China, and High Magnetic Field Laboratory, Chinese Academy of Sciences, Hefei, 230026, China
| | - Lei Liu
- Tsinghua-Peking Joint Center for Life Sciences, Ministry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical Biology, Center for Synthetic and Systems Biology, Department of Chemistry, Tsinghua University, Beijing, 100084, China
| |
Collapse
|
15
|
Zhang B, Deng Q, Zuo C, Yan B, Zuo C, Cao X, Zhu TF, Zheng J, Liu L. Ligation of Soluble but Unreactive Peptide Segments in the Chemical Synthesis of
Haemophilus Influenzae
DNA Ligase. Angew Chem Int Ed Engl 2019. [DOI: 10.1002/ange.201905149] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Affiliation(s)
- Baochang Zhang
- Tsinghua–Peking Joint Center for Life SciencesMinistry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical BiologyCenter for Synthetic and Systems BiologyDepartment of ChemistryTsinghua University Beijing 100084 China
| | - Qiang Deng
- School of Life SciencesTsinghua University Beijing 100084 China
| | - Chong Zuo
- Tsinghua–Peking Joint Center for Life SciencesMinistry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical BiologyCenter for Synthetic and Systems BiologyDepartment of ChemistryTsinghua University Beijing 100084 China
| | - Bingjia Yan
- Tsinghua–Peking Joint Center for Life SciencesMinistry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical BiologyCenter for Synthetic and Systems BiologyDepartment of ChemistryTsinghua University Beijing 100084 China
| | - Chao Zuo
- Tsinghua–Peking Joint Center for Life SciencesMinistry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical BiologyCenter for Synthetic and Systems BiologyDepartment of ChemistryTsinghua University Beijing 100084 China
| | - Xiu‐Xiu Cao
- School of Life SciencesUniversity of Science and Technology of China, and High Magnetic Field LaboratoryChinese Academy of Sciences Hefei 230026 China
| | - Ting F. Zhu
- School of Life SciencesTsinghua University Beijing 100084 China
| | - Ji‐Shen Zheng
- School of Life SciencesUniversity of Science and Technology of China, and High Magnetic Field LaboratoryChinese Academy of Sciences Hefei 230026 China
| | - Lei Liu
- Tsinghua–Peking Joint Center for Life SciencesMinistry of Education Key Laboratory of Bioorganic Phosphorus Chemistry and Chemical BiologyCenter for Synthetic and Systems BiologyDepartment of ChemistryTsinghua University Beijing 100084 China
| |
Collapse
|
16
|
Du Y, Xu Y, Qi C, Wang C. Mechanistic study on the Knorr pyrazole synthesis-thioester generation reaction. Tetrahedron Lett 2019. [DOI: 10.1016/j.tetlet.2019.06.053] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
|
17
|
Yanase M, Nakatsu K, Cardos CJ, Konda Y, Hayashi G, Okamoto A. Cysteinylprolyl imide (CPI) peptide: a highly reactive and easily accessible crypto-thioester for chemical protein synthesis. Chem Sci 2019; 10:5967-5975. [PMID: 31360403 PMCID: PMC6566460 DOI: 10.1039/c9sc00646j] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Accepted: 05/09/2019] [Indexed: 12/21/2022] Open
Abstract
A new crypto-thioester, cysteinylprolyl imide (CPI) peptide, offers a practical synthetic pathway and reliable reaction rate to be successfully applied to chemical protein synthesis.
Native chemical ligation (NCL) between the C-terminal peptide thioester and the N-terminal cysteinyl-peptide revolutionized the field of chemical protein synthesis. The difficulty of direct synthesis of the peptide thioester in the Fmoc method has prompted the development of crypto-thioesters that can be efficiently converted into thioesters. Cysteinylprolyl ester (CPE), which is an N–S acyl shift-driven crypto-thioester that relies on an intramolecular O–N acyl shift to displace the amide-thioester equilibrium, enabled trans-thioesterification and subsequent NCL in one pot. However, the utility of CPE is limited because of the moderate thioesterification rates and the synthetic complexity introduced by the ester group. Herein, we develop a new crypto-thioester, cysteinylprolyl imide (CPI), which replaces the alcohol leaving group of CPE with other leaving groups such as benzimidazolidinone, oxazolidinone, and pyrrolidinone. CPI peptides were efficiently synthesized by using standard Fmoc solid-phase peptide synthesis (SPPS) and subsequent on-resin imide formation. Screening of the several imide structures indicated that methyloxazolidinone-t-leucine (MeOxd-Tle) showed faster conversion into thioester and higher stability against hydrolysis under NCL conditions. Finally, by using CPMeOxd-Tle peptides, we demonstrated the chemical synthesis of affibody via N-to-C sequential, three-segment ligation and histone H2A.Z via convergent four-segment ligation. This facile and straightforward method is expected to be broadly applicable to chemical protein synthesis.
Collapse
Affiliation(s)
- Masafumi Yanase
- Department of Chemistry and Biotechnology , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8656 , Japan .
| | - Koki Nakatsu
- Department of Chemistry and Biotechnology , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8656 , Japan .
| | - Charlane Joy Cardos
- Department of Chemistry and Biotechnology , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8656 , Japan .
| | - Yoshiki Konda
- Department of Chemistry and Biotechnology , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8656 , Japan .
| | - Gosuke Hayashi
- Department of Chemistry and Biotechnology , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8656 , Japan . .,Department of Biomolecular Engineering , Graduate School of Engineering , Nagoya University , Furo-cho, Chikusa-ku , Nagoya 464-8603 , Japan .
| | - Akimitsu Okamoto
- Department of Chemistry and Biotechnology , The University of Tokyo , 7-3-1 Hongo, Bunkyo-ku , Tokyo 113-8656 , Japan . .,Research Center for Advanced Science and Technology , The University of Tokyo , 4-6-1 Komaba, Meguro-ku , Tokyo 153-8904 , Japan
| |
Collapse
|
18
|
Agouridas V, El Mahdi O, Diemer V, Cargoët M, Monbaliu JCM, Melnyk O. Native Chemical Ligation and Extended Methods: Mechanisms, Catalysis, Scope, and Limitations. Chem Rev 2019; 119:7328-7443. [DOI: 10.1021/acs.chemrev.8b00712] [Citation(s) in RCA: 243] [Impact Index Per Article: 48.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Vangelis Agouridas
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Ouafâa El Mahdi
- Faculté Polydisciplinaire de Taza, University Sidi Mohamed Ben Abdellah, BP 1223 Taza Gare, Morocco
| | - Vincent Diemer
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Marine Cargoët
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| | - Jean-Christophe M. Monbaliu
- Center for Integrated Technology and Organic Synthesis, Department of Chemistry, University of Liège, Building B6a, Room 3/16a, Sart-Tilman, B-4000 Liège, Belgium
| | - Oleg Melnyk
- UMR CNRS 8204, Centre d’Immunité et d’Infection de Lille, University of Lille, CNRS, Institut Pasteur de Lille, F-59000 Lille, France
| |
Collapse
|