1
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McCarthy DR, Xu K, Schenkelberg ME, Balegamire NAN, Liang H, Bellino SA, Li J, Schneebeli ST. Kinetically controlled synthesis of rotaxane geometric isomers. Chem Sci 2024; 15:4860-4870. [PMID: 38550687 PMCID: PMC10967009 DOI: 10.1039/d3sc04412b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 01/24/2024] [Indexed: 04/30/2024] Open
Abstract
Geometric isomerism in mechanically interlocked systems-which arises when the axle of a mechanically interlocked molecule is oriented, and the macrocyclic component is facially dissymmetric-can provide enhanced functionality for directional transport and polymerization catalysis. We now introduce a kinetically controlled strategy to control geometric isomerism in [2]rotaxanes. Our synthesis provides the major geometric isomer with high selectivity, broadening synthetic access to such interlocked structures. Starting from a readily accessible [2]rotaxane with a symmetrical axle, one of the two stoppers is activated selectively for stopper exchange by the substituents on the ring component. High selectivities are achieved in these reactions, based on coupling the selective formation reactions leading to the major products with inversely selective depletion reactions for the minor products. Specifically, in our reaction system, the desired (major) product forms faster in the first step, while the undesired (minor) product subsequently reacts away faster in the second step. Quantitative 1H NMR data, fit to a detailed kinetic model, demonstrates that this effect (which is conceptually closely related to minor enantiomer recycling and related processes) can significantly improve the intrinsic selectivity of the reactions. Our results serve as proof of principle for how multiple selective reaction steps can work together to enhance the stereoselectivity of synthetic processes forming complex mechanically interlocked molecules.
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Affiliation(s)
- Dillon R McCarthy
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
| | - Ke Xu
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Mica E Schenkelberg
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Nils A N Balegamire
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Huiming Liang
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
| | - Shea A Bellino
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
| | - Jianing Li
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
| | - Severin T Schneebeli
- Departments of Chemistry, Pathology, and Materials Science Program, University of Vermont Burlington VT 05405 USA
- Departments of Industrial & Molecular Pharmaceutics, Chemistry, and Medicinal Chemistry & Molecular Pharmacology, Purdue University West Lafayette IN 47907 USA
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2
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Becharguia N, Nierengarten I, Strub JM, Cianférani S, Rémy M, Wasielewski E, Abidi R, Nierengarten JF. Solution and Solvent-Free Stopper Exchange Reactions for the Preparation of Pillar[5]arene-containing [2] and [3]Rotaxanes. Chemistry 2024; 30:e202304131. [PMID: 38165139 DOI: 10.1002/chem.202304131] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 12/30/2023] [Accepted: 01/02/2024] [Indexed: 01/03/2024]
Abstract
Diamine reagents have been used to functionalize a [2]rotaxane building block bearing an activated pentafluorophenyl ester stopper. Upon a first acylation, an intermediate host-guest complex with a terminal amine function is obtained. Dissociation of the intermediate occurs in solution and acylation of the released axle generates a [2]rotaxane with an elongated axle subunit. In contrast, the corresponding [3]rotaxane can be obtained if the reaction conditions are appropriate to stabilize the inclusion complex of the mono-amine intermediate and the pillar[5]arene. This is the case when the stopper exchange is performed under mechanochemical solvent-free conditions. Alternatively, if the newly introduced terminal amide group is large enough to prevent the dissociation, the second acylation provides exclusively a [3]rotaxane. On the other hand, detailed conformational analysis has been also carried out by variable temperature NMR investigations. A complete understanding of the shuttling motions of the pillar[5]arene subunit along the axles of the rotaxanes reported therein has been achieved with the help of density functional theory calculations.
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Affiliation(s)
- Nihed Becharguia
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042, LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
- Laboratoire d'Applications de la Chimie aux Ressources et Substances Naturelles et l'Environnement, Faculté des Sciences de Bizerte, Université de Carthage, 7021, Zarzouna Bizerte, Tunisia
| | - Iwona Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042, LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Jean-Marc Strub
- Laboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg et CNRS (UMR 7178, IPHC), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Sarah Cianférani
- Laboratoire de Spectrométrie de Masse BioOrganique, Université de Strasbourg et CNRS (UMR 7178, IPHC), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Marine Rémy
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042, LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Emeric Wasielewski
- Plateforme RMN Cronenbourg, Université de Strasbourg et CNRS (UMR 7042, LIMA) Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Rym Abidi
- Laboratoire d'Applications de la Chimie aux Ressources et Substances Naturelles et l'Environnement, Faculté des Sciences de Bizerte, Université de Carthage, 7021, Zarzouna Bizerte, Tunisia
| | - Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042, LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
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3
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Becharguia N, Wasielewski E, Abidi R, Nierengarten I, Nierengarten JF. Stepwise Functionalization of a Pillar[5]arene-Containing [2]Rotaxane with Pentafluorophenyl Ester Stoppers. Chemistry 2024; 30:e202303501. [PMID: 37983752 DOI: 10.1002/chem.202303501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Revised: 11/18/2023] [Accepted: 11/20/2023] [Indexed: 11/22/2023]
Abstract
Detailed investigations into the stepwise bis-functionalization of a pillar[5]arene-containing rotaxane building block have been carried out. Upon a first stopper exchange, the pillar[5]arene moiety of the mono-acylated product is preferentially located close to its reactive pentafluorophenyl ester stopper, thus limiting the accessibility to the reactive carbonyl group by the nucleophilic reagents. Selective mono-functionalization is thus very efficient. Introduction of a second stopper is then possible to generate dissymmetrical rotaxanes with different amide stoppers. Moreover, when dethreading is possible upon the second acylation, the pillar[5]arene plays the role of a protecting group allowing the synthesis of dissymmetrical axles that are particularly difficult to prepare under statistical conditions. Finally, detailed conformation analysis of the rotaxanes revealed that the position of the pillar[5]arene moiety on its axle subunit is mainly governed by polar interactions in nonpolar organic solvents, whereas solvophobic effects play a major role in polar solvents.
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Affiliation(s)
- Nihed Becharguia
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
- Laboratoire d'Applications de la Chimie aux Ressources et, Substances Naturelles et l'Environnement, Faculté des Sciences de Bizerte, Université de Carthage, 7021 Zarzouna, Bizerte, Tunisia
| | - Emeric Wasielewski
- Plateforme RMN Cronenbourg, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Rym Abidi
- Laboratoire d'Applications de la Chimie aux Ressources et, Substances Naturelles et l'Environnement, Faculté des Sciences de Bizerte, Université de Carthage, 7021 Zarzouna, Bizerte, Tunisia
| | - Iwona Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
| | - Jean-François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires, Université de Strasbourg et CNRS (UMR 7042 LIMA), Ecole Européenne de Chimie, Polymères et Matériaux, 25 rue Becquerel, 67087, Strasbourg Cedex 2, France
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4
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Rad N, Sashuk V. A light-gated regulation of the reaction site by a cucurbit[7]uril macrocycle. Chem Sci 2022; 13:12440-12444. [DOI: 10.1039/d2sc02077g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 10/10/2022] [Indexed: 11/21/2022] Open
Abstract
On–off competitive inhibition is presented. Photoswitchable pseudorotaxane controls the rate of self-reaction and product selectivity of external reactions.
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Affiliation(s)
- Nazar Rad
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Volodymyr Sashuk
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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5
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Wang K, Tian X, Jordan JH, Velmurugan K, Wang L, Hu XY. The emerging applications of pillararene architectures in supramolecular catalysis. CHINESE CHEM LETT 2022. [DOI: 10.1016/j.cclet.2021.06.026] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
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6
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Rémy M, Nierengarten I, Park B, Holler M, Hahn U, Nierengarten J. Pentafluorophenyl Esters as Exchangeable Stoppers for the Construction of Photoactive [2]Rotaxanes. Chemistry 2021; 27:8492-8499. [DOI: 10.1002/chem.202100943] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Indexed: 12/25/2022]
Affiliation(s)
- Marine Rémy
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7402 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Iwona Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7402 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Boram Park
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7402 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Michel Holler
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7402 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Uwe Hahn
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7402 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
| | - Jean‐François Nierengarten
- Laboratoire de Chimie des Matériaux Moléculaires Université de Strasbourg et CNRS (UMR 7402 LIMA) Ecole Européenne de Chimie, Polymères et Matériaux 25 rue Becquerel 67087 Strasbourg Cedex 2 France
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7
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Jaynes TJ, Sharafi M, Campbell JP, Bocanegra J, McKay KT, Little K, Osadchey Brown R, Gray DL, Woods TJ, Li J, Schneebeli ST. Iterative Exponential Growth of Oxygen-Linked Aromatic Polymers Driven by Nucleophilic Aromatic Substitution Reactions. Front Chem 2021; 9:620017. [PMID: 33996739 PMCID: PMC8113702 DOI: 10.3389/fchem.2021.620017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Accepted: 02/11/2021] [Indexed: 11/13/2022] Open
Abstract
This work presents the first transition metal-free synthesis of oxygen-linked aromatic polymers by integrating iterative exponential polymer growth (IEG) with nucleophilic aromatic substitution (SNAr) reactions. Our approach applies methyl sulfones as the leaving groups, which eliminate the need for a transition metal catalyst, while also providing flexibility in functionality and configuration of the building blocks used. As indicated by 1) 1H-1H NOESY NMR spectroscopy, 2) single-crystal X-ray crystallography, and 3) density functional theory (DFT) calculations, the unimolecular polymers obtained are folded by nonclassical hydrogen bonds formed between the oxygens of the electron-rich aromatic rings and the positively polarized C-H bonds of the electron-poor pyrimidine functions. Our results not only introduce a transition metal-free synthetic methodology to access precision polymers but also demonstrate how interactions between relatively small, neutral aromatic units in the polymers can be utilized as new supramolecular interaction pairs to control the folding of precision macromolecules.
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Affiliation(s)
- Tyler J. Jaynes
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | - Mona Sharafi
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | - Joseph P. Campbell
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | - Jessica Bocanegra
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | - Kyle T. McKay
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | - Kassondra Little
- Department of Chemistry, University of Vermont, Burlington, VT, United States
| | | | - Danielle L. Gray
- George L. Clark X-Ray Facility and 3M Materials Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, United States
| | - Toby J. Woods
- George L. Clark X-Ray Facility and 3M Materials Laboratory, University of Illinois at Urbana-Champaign, Urbana, IL, United States
| | - Jianing Li
- Department of Chemistry, University of Vermont, Burlington, VT, United States
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8
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Wang K, Jordan JH, Velmurugan K, Tian X, Zuo M, Hu XY, Wang L. Role of Functionalized Pillararene Architectures in Supramolecular Catalysis. Angew Chem Int Ed Engl 2020; 60:9205-9214. [PMID: 32794352 DOI: 10.1002/anie.202010150] [Citation(s) in RCA: 52] [Impact Index Per Article: 13.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2020] [Indexed: 12/14/2022]
Abstract
The many useful features possessed by pillararenes (PAs; e.g. rigid, capacious, and hydrophobic cavities, as well as exposed functional groups) have led to a tremendous increase in their popularity since their first discovery in 2008. In this Minireview, we emphasize the use of functionalized PAs and their assembled supramolecular materials in the field of catalysis. We aim to provide a fundamental understanding and mechanism of the role PAs play in catalytic process. The topics are subdivided into catalysis promoted by the PA rim/cavity, PA-based nanomaterials, and PA-based polymeric materials. To the best of our knowledge, this is the first overview on PA-based catalysis. This Minireview not only summarizes the fabrications and applications of PAs in catalysis but also anticipates future research efforts in applying supramolecular hosts in catalysis.
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Affiliation(s)
- Kaiya Wang
- College of Materials Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, China
| | - Jacobs H Jordan
- The Southern Regional Research Center, Agricultural Research Service, USDA, New Orleans, LA, 70124, USA
| | - Krishnasamy Velmurugan
- College of Materials Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, China
| | - Xueqi Tian
- College of Materials Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, China
| | - Minzan Zuo
- College of Materials Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, China
| | - Xiao-Yu Hu
- College of Materials Science and Technology, Nanjing University of Aeronautics and Astronautics, Nanjing, 211106, China
| | - Leyong Wang
- Key Laboratory of Mesoscopic Chemistry of MOE, School of Chemistry and Chemical Engineering, Nanjing University, Nanjing, 210023, China
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9
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Wang K, Jordan JH, Velmurugan K, Tian X, Zuo M, Hu X, Wang L. Role of Functionalized Pillararene Architectures in Supramolecular Catalysis. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202010150] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Kaiya Wang
- College of Materials Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Jacobs H. Jordan
- The Southern Regional Research Center Agricultural Research Service, USDA New Orleans LA 70124 USA
| | - Krishnasamy Velmurugan
- College of Materials Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Xueqi Tian
- College of Materials Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Minzan Zuo
- College of Materials Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Xiao‐Yu Hu
- College of Materials Science and Technology Nanjing University of Aeronautics and Astronautics Nanjing 211106 China
| | - Leyong Wang
- Key Laboratory of Mesoscopic Chemistry of MOE School of Chemistry and Chemical Engineering Nanjing University Nanjing 210023 China
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