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Alonso E, Insausti A, Peña I, Sanz-Novo M, Aguado R, León I, Alonso JL. Revealing the Structure of Sheer N-Acetylglucosamine, an Essential Chemical Scaffold in Glycobiology. J Phys Chem Lett 2024; 15:10314-10320. [PMID: 39373285 PMCID: PMC11492373 DOI: 10.1021/acs.jpclett.4c02128] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2024] [Revised: 09/30/2024] [Accepted: 10/01/2024] [Indexed: 10/08/2024]
Abstract
We explored the conformational landscape of N-acetyl-α-d-glucosamine (α-GlcNAc), a fundamental chemical scaffold in glycobiology. Solid samples were vaporized by laser ablation, expanded in a supersonic jet, and characterized by broadband chirped pulse Fourier transform microwave spectroscopy. In the isolation conditions of the jet, three different structures of GlcNAc have been discovered. These are conclusively identified by comparing the experimental values of the rotational constants with those predicted by theoretical calculations. The conformational preferences are controlled by intramolecular hydrogen bond networks formed between the polar groups in the acetamido group and the hydroxyl groups and dominated in all cases by a strong OH···O═C interaction. We reported an exception to the gauche effect due to the enhanced stability observed for the Tg+ conformer. All the structures present the same disposition of the acetamido group, which explains the highly selective binding of N-acetylglucosamine with different amino acid residues. Thus, the comprehensive structural data provided here shall help to shed some light on the biological role of this relevant amino sugar.
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Affiliation(s)
- Elena
R. Alonso
- Grupo
de Espectroscopia Molecular (GEM), Edificio Quifima, Área de
Química-Física, Laboratorios de Espectroscopia
y Bioespectroscopia, Parque Científico UVa, Unidad Asociada
CSIC, Universidad de Valladolid, 47011 Valladolid, Spain
| | - Aran Insausti
- Departamento
de Química Física, Facultad de Ciencia y
Tecnología, Universidad del
País Vasco, Barrio Sarriena s/n, 48940 Leioa, Spain
| | - Isabel Peña
- Departamento
de Química Física y Química
Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47011 Valladolid, Spain
| | - Miguel Sanz-Novo
- Grupo
de Espectroscopia Molecular (GEM), Edificio Quifima, Área de
Química-Física, Laboratorios de Espectroscopia
y Bioespectroscopia, Parque Científico UVa, Unidad Asociada
CSIC, Universidad de Valladolid, 47011 Valladolid, Spain
| | - Raúl Aguado
- Grupo
de Espectroscopia Molecular (GEM), Edificio Quifima, Área de
Química-Física, Laboratorios de Espectroscopia
y Bioespectroscopia, Parque Científico UVa, Unidad Asociada
CSIC, Universidad de Valladolid, 47011 Valladolid, Spain
| | - Iker León
- Grupo
de Espectroscopia Molecular (GEM), Edificio Quifima, Área de
Química-Física, Laboratorios de Espectroscopia
y Bioespectroscopia, Parque Científico UVa, Unidad Asociada
CSIC, Universidad de Valladolid, 47011 Valladolid, Spain
| | - José L. Alonso
- Grupo
de Espectroscopia Molecular (GEM), Edificio Quifima, Área de
Química-Física, Laboratorios de Espectroscopia
y Bioespectroscopia, Parque Científico UVa, Unidad Asociada
CSIC, Universidad de Valladolid, 47011 Valladolid, Spain
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2
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Ayachi H, Gazzeh H, Boubaker T, Guillemin JC. Methylenecyanamide (CH 2═NCN) and ( Z)- and ( E)-Iminoacetonitriles (NC-CH═NH), Dimers of Hydrogen Cyanide. J Org Chem 2023; 88:2570-2574. [PMID: 36709430 DOI: 10.1021/acs.joc.2c02493] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
(Z)- and (E)-iminoacetonitriles (NCCH═NH), two hydrogen cyanide dimers, are described as key compounds in prebiotic chemistry. Among the many possible dimers of HCN with covalent bonds, even the second on the scale of thermodynamic stability, methylenecyanamide (CH2═NCN), has been investigated little. We show that this compound can be isolated, is stable enough to give an adduct with a nucleophile or a diene, and can be easily generated under prebiotic conditions, highlighting a possible role in this medium. Comparison between isomers shows significant differences in formation and chemical reactivity.
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Affiliation(s)
- Hajer Ayachi
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR 6226, Univ Rennes,, 35000 Rennes, France.,Université de Monastir, Avenue Taher Hadded, B.P. 56, Monastir 5000, Tunisia
| | - Houda Gazzeh
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR 6226, Univ Rennes,, 35000 Rennes, France.,Université de Monastir, Avenue Taher Hadded, B.P. 56, Monastir 5000, Tunisia
| | - Taoufik Boubaker
- Université de Monastir, Avenue Taher Hadded, B.P. 56, Monastir 5000, Tunisia
| | - Jean-Claude Guillemin
- Ecole Nationale Supérieure de Chimie de Rennes, CNRS, ISCR-UMR 6226, Univ Rennes,, 35000 Rennes, France
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3
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Chitarra O, Pirali O, Spaniol JT, Hearne TS, Loison JC, Stanton JF, Martin-Drumel MA. Pure Rotational Spectroscopy of the CH 2CN Radical Extended to the Sub-Millimeter Wave Spectral Region. J Phys Chem A 2022; 126:7502-7513. [PMID: 36198131 DOI: 10.1021/acs.jpca.2c04399] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present a thorough pure rotational investigation of the CH2CN radical in its ground vibrational state. Our measurements cover the millimeter and sub-millimeter wave spectral regions (79-860 GHz) using a W-band chirped-pulse instrument and a frequency multiplication chain-based spectrometer. The radical was produced in a flow cell at room temperature by H abstraction from acetonitrile using atomic fluorine. The newly recorded transitions of CH2CN (involving N″ and Ka″ up to 42 and 8, respectively) were combined with the literature data, leading to a refinement of the spectroscopic parameters of the species using a Watson S-reduced Hamiltonian. In particular, the A rotational constant and K-dependent parameters are significantly better determined than in previous studies. The present model, which reproduces all experimental transitions to their experimental accuracy, allows for confident searches for the radical in cold to warm environments of the interstellar medium.
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Affiliation(s)
- Olivia Chitarra
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405Orsay, France
| | - Olivier Pirali
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405Orsay, France
| | - Jean-Thibaut Spaniol
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405Orsay, France
| | - Thomas S Hearne
- Université Paris-Saclay, CNRS, Institut des Sciences Moléculaires d'Orsay, 91405Orsay, France
| | | | - John F Stanton
- Quantum Theory Project, Department of Chemistry, University of Florida, Gainesville32611, Florida, United States
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4
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Aguado R, Sanz-Novo M, Mata S, León I, Alonso JL. Unveiling the Shape of N-Acetylgalactosamine: A Cancer-Associated Sugar Derivative. J Phys Chem A 2022; 126:7621-7626. [PMID: 36099577 DOI: 10.1021/acs.jpca.2c04595] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In the present work, we report the first rotational study of N-acetylgalactosamine, a cancer-associated sugar derivative, by means of high-resolution rotational spectroscopy. Two different conformers have been conclusively characterized using broadband Fourier transform microwave spectroscopy coupled with a laser ablation vaporization system. Additionally, we performed a comprehensive analysis of the intramolecular interactions that govern these structures, which allowed us to both characterize the existence of intramolecular hydrogen bond networks that drive the intrinsic conformation panorama of N-acetylgalactosamine and further rationalize the biological role of this aminosugar derivative as part of the Tn antigen.
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Affiliation(s)
- R Aguado
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Área de Química-Física, Laboratorios de Espectroscopía y Bioespectroscopía, Parque Científico UVa, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid 47011, Spain
| | - M Sanz-Novo
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Área de Química-Física, Laboratorios de Espectroscopía y Bioespectroscopía, Parque Científico UVa, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid 47011, Spain
| | - S Mata
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Área de Química-Física, Laboratorios de Espectroscopía y Bioespectroscopía, Parque Científico UVa, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid 47011, Spain
| | - I León
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Área de Química-Física, Laboratorios de Espectroscopía y Bioespectroscopía, Parque Científico UVa, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid 47011, Spain
| | - J L Alonso
- Grupo de Espectroscopía Molecular (GEM), Edificio Quifima, Área de Química-Física, Laboratorios de Espectroscopía y Bioespectroscopía, Parque Científico UVa, Unidad Asociada CSIC, Universidad de Valladolid, Valladolid 47011, Spain
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5
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Sanz‐Novo M, Mato M, León Í, Echavarren AM, Alonso JL. Shape‐Shifting Molecules: Unveiling the Valence Tautomerism Phenomena in Bare Barbaralones. Angew Chem Int Ed Engl 2022; 61:e202117045. [PMID: 35165988 PMCID: PMC9311078 DOI: 10.1002/anie.202117045] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Indexed: 12/28/2022]
Abstract
We report a state‐of‐the‐art spectroscopic study of an archetypical barbaralone, conclusively revealing the valence tautomerism phenomena for this bistable molecular system. The two distinct 1‐ and 5‐substituted valence tautomers have been isolated in a supersonic expansion for the first time and successfully characterized by high‐resolution rotational spectroscopy. This work provides irrefutable experimental evidence of the [3,3]‐rearrangement in barbaralones and highlights the use of rotational spectroscopy to analyze shape‐shifting mixtures. Moreover, this observation opens the window toward the characterization of new fluxional systems in the isolation conditions of the gas phase and should serve as a reference point in the general understanding of valence tautomerism.
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Affiliation(s)
- Miguel Sanz‐Novo
- Grupo de Espectroscopía Molecular (GEM) Edificio Quifima Área de Química-Física Laboratorios de Espectroscopía y Bioespectroscopía Parque Científico UVa Unidad Asociada CSIC Universidad de Valladolid 47011 Valladolid Spain
| | - Mauro Mato
- Institute of Chemical Research of Catalonia (ICIQ) Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
- Departament de Química Analítica i Química Orgànica Universitat Rovira i Virgili C/Marcel⋅li Domingo s/n 43007 Tarragona Spain
| | - Íker León
- Grupo de Espectroscopía Molecular (GEM) Edificio Quifima Área de Química-Física Laboratorios de Espectroscopía y Bioespectroscopía Parque Científico UVa Unidad Asociada CSIC Universidad de Valladolid 47011 Valladolid Spain
| | - Antonio M. Echavarren
- Institute of Chemical Research of Catalonia (ICIQ) Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
- Departament de Química Analítica i Química Orgànica Universitat Rovira i Virgili C/Marcel⋅li Domingo s/n 43007 Tarragona Spain
| | - José L. Alonso
- Grupo de Espectroscopía Molecular (GEM) Edificio Quifima Área de Química-Física Laboratorios de Espectroscopía y Bioespectroscopía Parque Científico UVa Unidad Asociada CSIC Universidad de Valladolid 47011 Valladolid Spain
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6
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Sanz‐Novo M, Mato M, León Í, Echavarren AM, Alonso JL. Shape‐Shifting Molecules: Unveiling the Valence Tautomerism Phenomena in Bare Barbaralones. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202117045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Miguel Sanz‐Novo
- Grupo de Espectroscopía Molecular (GEM) Edificio Quifima Área de Química-Física Laboratorios de Espectroscopía y Bioespectroscopía Parque Científico UVa Unidad Asociada CSIC Universidad de Valladolid 47011 Valladolid Spain
| | - Mauro Mato
- Institute of Chemical Research of Catalonia (ICIQ) Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
- Departament de Química Analítica i Química Orgànica Universitat Rovira i Virgili C/Marcel⋅li Domingo s/n 43007 Tarragona Spain
| | - Íker León
- Grupo de Espectroscopía Molecular (GEM) Edificio Quifima Área de Química-Física Laboratorios de Espectroscopía y Bioespectroscopía Parque Científico UVa Unidad Asociada CSIC Universidad de Valladolid 47011 Valladolid Spain
| | - Antonio M. Echavarren
- Institute of Chemical Research of Catalonia (ICIQ) Barcelona Institute of Science and Technology Av. Països Catalans 16 43007 Tarragona Spain
- Departament de Química Analítica i Química Orgànica Universitat Rovira i Virgili C/Marcel⋅li Domingo s/n 43007 Tarragona Spain
| | - José L. Alonso
- Grupo de Espectroscopía Molecular (GEM) Edificio Quifima Área de Química-Física Laboratorios de Espectroscopía y Bioespectroscopía Parque Científico UVa Unidad Asociada CSIC Universidad de Valladolid 47011 Valladolid Spain
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7
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Sanz-Novo M, León I, Alonso ER, Alonso JL. Unleashing the shape of L-DOPA at last. Phys Chem Chem Phys 2021; 24:3546-3554. [PMID: 34908061 DOI: 10.1039/d1cp05066d] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
Herein, we report the first rotational study of neutral L-DOPA, an extensively used supramolecular synthon and an amino acid precursor of the neurotransmitters dopamine, norepinephrine (noradrenaline), and epinephrine (adrenaline) using broadband and narrowband Fourier transform microwave spectroscopies coupled with a laser ablation vaporization system. The spectroscopic parameters derived from the analysis of the rotational spectrum conclusively identify the existence of four distinct conformers of L-DOPA in the supersonic jet, further rejecting the previously reported catechol ring-induced conformational restriction. The analysis of the 14N nuclear quadrupole coupling hyperfine structure further revealed the orientation of the N-bearing functional group, proving the existence of stabilizing N-H⋯π interactions for the observed structures.
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Affiliation(s)
- Miguel Sanz-Novo
- Espectroscopía Molecular (GEM), Edificio Quifima Laboratorios de Espectroscopía y Bioespectroscopía Unidad Asociada CSIC, Parque Científico Uva Universidad de Valladolid, Paseo de Belén 5, Valladolid 47011, Spain.
| | - Iker León
- Espectroscopía Molecular (GEM), Edificio Quifima Laboratorios de Espectroscopía y Bioespectroscopía Unidad Asociada CSIC, Parque Científico Uva Universidad de Valladolid, Paseo de Belén 5, Valladolid 47011, Spain.
| | - Elena R Alonso
- Espectroscopía Molecular (GEM), Edificio Quifima Laboratorios de Espectroscopía y Bioespectroscopía Unidad Asociada CSIC, Parque Científico Uva Universidad de Valladolid, Paseo de Belén 5, Valladolid 47011, Spain.
| | - José L Alonso
- Espectroscopía Molecular (GEM), Edificio Quifima Laboratorios de Espectroscopía y Bioespectroscopía Unidad Asociada CSIC, Parque Científico Uva Universidad de Valladolid, Paseo de Belén 5, Valladolid 47011, Spain.
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