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Kurki L, Oinonen N, Foster AS. Automated Structure Discovery for Scanning Tunneling Microscopy. ACS NANO 2024; 18:11130-11138. [PMID: 38644571 PMCID: PMC11064214 DOI: 10.1021/acsnano.3c12654] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 03/25/2024] [Accepted: 04/05/2024] [Indexed: 04/23/2024]
Abstract
Scanning tunneling microscopy (STM) with a functionalized tip apex reveals the geometric and electronic structures of a sample within the same experiment. However, the complex nature of the signal makes images difficult to interpret and has so far limited most research to planar samples with a known chemical composition. Here, we present automated structure discovery for STM (ASD-STM), a machine learning tool for predicting the atomic structure directly from an STM image, by building upon successful methods for structure discovery in noncontact atomic force microscopy (nc-AFM). We apply the method on various organic molecules and achieve good accuracy on structure predictions and chemical identification on a qualitative level while highlighting future development requirements for ASD-STM. This method is directly applicable to experimental STM images of organic molecules, making structure discovery available for a wider scanning probe microscopy audience outside of nc-AFM. This work also allows more advanced machine learning methods to be developed for STM structure discovery.
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Affiliation(s)
- Lauri Kurki
- Department
of Applied Physics, Aalto University, Aalto, Espoo 00076, Finland
| | - Niko Oinonen
- Department
of Applied Physics, Aalto University, Aalto, Espoo 00076, Finland
- Nanolayers
Research Computing Ltd., London N12 0HL, U.K.
| | - Adam S. Foster
- Department
of Applied Physics, Aalto University, Aalto, Espoo 00076, Finland
- WPI
Nano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan
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2
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Izu AE, Matxain JM, Casanova D. Reverse intersystem crossing mechanisms in doped triangulenes. Phys Chem Chem Phys 2024; 26:11459-11468. [PMID: 38563957 DOI: 10.1039/d4cp00304g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Thermally activated delayed fluorescence (TADF) has emerged as one of the most promising strategies in the quest for organic light emitting diodes with optimal performance. This computational study dissects the mechanistic intricacies of the central photophysical step, reverse intersystem crossing (rISC) in N and B doped triangulenes as potential multi-resonance TADF compounds. Optimal molecular patterns conducive to efficient rISC, encompassing dopant atom size, number, and distribution, are identified. Additionally, we assess various electronic structure methods for characterizing TADF-relevant molecular systems. The findings identify the distinct role of the direct and mediated mechanisms in rISC, and provide insights into the design of advanced TADF chromophores for next-generation OLED technology.
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Affiliation(s)
- Asier E Izu
- Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain.
- Polimero eta Material Aurreratuak: Fisika, Kimika eta Teknologia Saila, Kimika Fakultatea, Euskal Herriko Unibertsitatea (UPV/EHU), PK 1072, 20080 Donostia, Euskadi, Spain
| | - Jon M Matxain
- Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain.
- Polimero eta Material Aurreratuak: Fisika, Kimika eta Teknologia Saila, Kimika Fakultatea, Euskal Herriko Unibertsitatea (UPV/EHU), PK 1072, 20080 Donostia, Euskadi, Spain
| | - David Casanova
- Donostia International Physics Center (DIPC), 20018 Donostia, Euskadi, Spain.
- IKERBASQUE, Basque Foundation for Science, 48009 Bilbao, Euskadi, Spain
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3
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Lisiecki J, Szabelski P. Predicting Organometallic Intermediates in the Surface-Assisted Ullmann Coupling of Chrysene Isomers. Molecules 2024; 29:1553. [PMID: 38611833 PMCID: PMC11013314 DOI: 10.3390/molecules29071553] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Revised: 03/26/2024] [Accepted: 03/28/2024] [Indexed: 04/14/2024] Open
Abstract
On-surface polymerization of functional organic molecules has been recently recognized as a promising route to persistent low-dimensional structures with tailorable properties. In this contribution, using the coarse-grained Monte Carlo simulation method, we study the initial stage of the Ullmann coupling of doubly halogenated chrysene isomers adsorbed on a catalytically active (111) crystalline surface. To that end, we focus on the formation of labile metal-organic precursor structures preceding the covalent bonding of chrysene monomers. Four monomeric chrysene units with differently distributed halogen substituents were probed in the simulations, and the resulting precursor structures were compared and quantified. Moreover, the effect of (pro)chirality of chrysene tectons on the structure formation was elucidated by running separate simulations in enantiopure and racemic systems. The calculations showed that suitable manipulation of the halogen substitution pattern allows for the creation of diverse precursor architectures, ranging from straight and winded chains to cyclic oligomers with enantiopure, racemic, and nonracemic composition. The obtained findings can be helpful in developing synthetic strategies for covalent polymers with predefined architecture and functionality.
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Affiliation(s)
| | - Paweł Szabelski
- Department of Theoretical Chemistry, Institute of Chemical Sciences, Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, Pl. M.C. Skłodowskiej 3, 20-031 Lublin, Poland;
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4
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Fang T, Zhang T, Hu T, Wang Z. Atomic-Limit Mott Insulator in [4]Triangulene Frameworks. NANO LETTERS 2024; 24:3059-3066. [PMID: 38426713 DOI: 10.1021/acs.nanolett.3c04675] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/02/2024]
Abstract
Triangulene, one unique class of zigzag-edged triangular graphene molecules, has attracted tremendous research interest. In this work, as an ultimate phase of the Mott insulator, we present the realization of the atomic-limit Mott insulator in experimentally synthesized [4]triangulene frameworks ([4]-TGFs) from first-principles calculations. The frontier molecular orbitals of the nonmagnetic [4]triangulene consist of three coupled corner modes. After the isolated [4]triangulene is assembled into [4]-TGF, one special enantiomorphic flat band is created through the coupling of these corner modes, which is identified to be a second-order topological insulator with half-filled topological corner states at the Fermi level. Moreover, [4]-TGF prefers an antiferromagnetic ground state under Hubbard interactions, which further splits these metallic zero-energy states into an atomic-limit Mott insulator with spin-polarized corners. Since the fractional filling of topological corner states is a smoking-gun signature of higher-order topology, our results demonstrate a universal approach to explore the atomic-limit Mott insulators in higher-order topological materials.
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Affiliation(s)
- Tiancheng Fang
- Hefei National Research Center for Physical Sciences at the Microscale, CAS Key Laboratory of Strongly-Coupled Quantum Matter Physics, Department of Physics, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Tingfeng Zhang
- Hefei National Research Center for Physical Sciences at the Microscale, CAS Key Laboratory of Strongly-Coupled Quantum Matter Physics, Department of Physics, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Tianyi Hu
- Hefei National Research Center for Physical Sciences at the Microscale, CAS Key Laboratory of Strongly-Coupled Quantum Matter Physics, Department of Physics, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
| | - Zhengfei Wang
- Hefei National Research Center for Physical Sciences at the Microscale, CAS Key Laboratory of Strongly-Coupled Quantum Matter Physics, Department of Physics, University of Science and Technology of China, Hefei, Anhui 230026, People's Republic of China
- Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, People's Republic of China
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5
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Ruan L, Luo W, Zhang H, Liu P, Shi Y, An P. Cycl[2,2,4]azine-embedded non-alternant nanographenes containing fused antiaromatic azepine ring. Chem Sci 2024; 15:1511-1519. [PMID: 38274082 PMCID: PMC10806646 DOI: 10.1039/d3sc05515a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2023] [Accepted: 12/14/2023] [Indexed: 01/27/2024] Open
Abstract
The development of non-alternant nanographenes has attracted considerable attention due to their unique photophysical properties. Herein, we reported a novel aza-doped, non-alternant nanographene (NG) 1 by embedding the cycl[2,2,4]azine unit into the benzenoid NG framework. Single-crystal X-ray diffractometry suggests saddle or twisted nonplanar geometry of the entire backbone of 1 and coplanar conformation of the cycl[2,2,4]azine unit. DFT calculation together with solid structure indicates that NG 1 possesses significant local antiaromaticity in the azepine ring. By oxidative process or trifluoroacetic acid treatment, this nanographene can transform into a mono-radical cation, which was confirmed by UV/Vis absorption, 1H NMR, and electron paramagnetic resonance (EPR) spectroscopy. The antiaromaticity/aromaticity switching of the azepine ring on 1˙+ from 1 enables the high stability of this radical cation, which remained intact for over 1 day. Due to the electron-donating nature of the nitrogen and the unique electronic structure, NG 1 exhibits strong electron-donating properties, as proved by the intermolecular charge transfer towards C60 with a high association constant. Furthermore, selective modification of NG 1 was accomplished by Vilsmeier reaction, and the derivatives 7 and 8 with substituted benzophenone were obtained. The photophysical and electronic properties can be tuned by the introduction of different electronic groups in benzophenone.
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Affiliation(s)
- Lan Ruan
- School of Chemical Science and Technology, Yunnan University Kunming 650091 P. R. China
| | - Wanhua Luo
- School of Chemical Science and Technology, Yunnan University Kunming 650091 P. R. China
| | - Haifan Zhang
- School of Chemical Science and Technology, Yunnan University Kunming 650091 P. R. China
| | - Peng Liu
- School of Chemical Science and Technology, Yunnan University Kunming 650091 P. R. China
| | - Yong Shi
- School of Chemical Science and Technology, Yunnan University Kunming 650091 P. R. China
| | - Peng An
- School of Chemical Science and Technology, Yunnan University Kunming 650091 P. R. China
- Key Laboratory of Medicinal Chemistry for Natural Resource, Ministry of Education, Yunnan University Kunming 650091 P. R. China
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Hieulle J, Garcia Fernandez C, Friedrich N, Vegliante A, Sanz S, Sánchez-Portal D, Haley MM, Casado J, Frederiksen T, Pascual JI. From Solution to Surface: Persistence of the Diradical Character of a Diindenoanthracene Derivative on a Metallic Substrate. J Phys Chem Lett 2023; 14:11506-11512. [PMID: 38088859 DOI: 10.1021/acs.jpclett.3c02401] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2023]
Abstract
Organic diradicals are envisioned as elementary building blocks for designing a new generation of spintronic devices and have been used in constructing prototypical field effect transistors and nonlinear optical devices. Open-shell systems, however, are also reactive, thus requiring design strategies to "protect" their radical character from the environment, especially when they are embedded in solid-state devices. Here, we report the persistence on a metallic surface of the diradical character of a diindeno[b,i]anthracene (DIAn) core protected by bulky end-groups. Our scanning tunneling spectroscopy measurements on single-molecules detected singlet-triplet excitations that were absent for DIAn species packed in assembled structures. Density functional theory simulations unravel that the molecular geometry on the metal substrate can crucially modify the value of the singlet-triplet gap via the delocalization of the radical sites. The persistence of the diradical character over metallic substrates is a promising finding for integrating radical-based materials into functional devices.
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Affiliation(s)
| | | | | | | | - Sofia Sanz
- Donostia International Physics Center (DIPC), 20018 Donostia-San Sebastián, Spain
| | - Daniel Sánchez-Portal
- Donostia International Physics Center (DIPC), 20018 Donostia-San Sebastián, Spain
- Centro de Física de Materiales MPC (CSIC/UPV-EHU), 20018 Donostia-San Sebastián, Spain
| | - Michael M Haley
- Department of Chemistry & Biochemistry and the Materials Science Institute, University of Oregon, Eugene, Oregon 97403-1253, United States
| | - Juan Casado
- Department of Physical Chemistry, University of Malaga, Campus de Teatinos s/n, 229071 Malaga, Spain
| | - Thomas Frederiksen
- Donostia International Physics Center (DIPC), 20018 Donostia-San Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain
| | - José Ignacio Pascual
- CIC nanoGUNE-BRTA, 20018 Donostia-San Sebastián, Spain
- Ikerbasque, Basque Foundation for Science, 48013 Bilbao, Spain
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