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Özge Ö, Avcı D, Sönmez F, Tamer Ö, Dege N, Başoğlu A, Atalay Y, Kurt BZ. Synthesis, DFT calculations, α‐glucosidase inhibitor activity, and docking studies on Schiff base metal complexes containing isothiocyanate. Appl Organomet Chem 2023. [DOI: 10.1002/aoc.7084] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/30/2023]
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2
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Recent developments in synthetic α-glucosidase inhibitors: A comprehensive review with structural and molecular insight. J Mol Struct 2023. [DOI: 10.1016/j.molstruc.2023.135115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/11/2023]
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3
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The crystal structure of trans-[bis(4-methylpyridine- κN)bis(quinoline-2-carboxylato- κ
2
N,O)cadmium(II)], C 32H 26CdN 4O 4. Z KRIST-NEW CRYST ST 2022. [DOI: 10.1515/ncrs-2022-0515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
Abstract
C32H26CdN4O4, tetragonal, P41212 (no. 92), a = 13.7308(6) Å, c = 15.1806(7) Å, V = 2862.1(3) Å3, Z = 4, R
gt(F) = 0.0359, wR
ref(F
2) = 0.0693, T = 296(2) K.
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Docking study, molecular dynamic, synthesis, anti-α-glucosidase assessment, and ADMET prediction of new benzimidazole-Schiff base derivatives. Sci Rep 2022; 12:14870. [PMID: 36050498 PMCID: PMC9437094 DOI: 10.1038/s41598-022-18896-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2022] [Accepted: 08/22/2022] [Indexed: 11/09/2022] Open
Abstract
The control of postprandial hyperglycemia is an important target in the treatment of type 2 diabetes mellitus (T2DM). As a result, targeting α-glucosidase as the most important enzyme in the breakdown of carbohydrates to glucose that leads to an increase in postprandial hyperglycemia is one of the treatment processes of T2DM. In the present work, a new class of benzimidazole-Schiff base hybrids 8a–p has been developed based on the potent reported α-glucosidase inhibitors. These compounds were synthesized by sample recantations, characterized by 1H-NMR, 13C-NMR, FT-IR, and CHNS elemental analysis, and evaluated against α-glucosidase. All new compounds, with the exception of inactive compound 8g, showed excellent inhibitory activities (60.1 ± 3.6–287.1 ± 7.4 µM) in comparison to acarbose as the positive control (750.0 ± 10.5). Kinetic study of the most potent compound 8p showed a competitive type of inhibition (Ki value = 60 µM). In silico induced fit docking and molecular dynamics studies were performed to further investigate the interaction, orientation, and conformation of the title new compounds over the active site of α-glucosidase. In silico druglikeness analysis and ADMET prediction of the most potent compounds demonstrated that these compounds were druglikeness and had satisfactory ADMET profile.
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Avcı D, Altürk S, Sönmez F, Tamer Ö, Başoğlu A, Atalay Y, Kurt BZ, Dege N. A novel series of M(II) complexes of 6‐methylpyridine‐2‐carboxylic acid with 4(5)methylimidazole: Synthesis, crystal structures, α‐glucosidase activity, density functional theory calculations and molecular docking. Appl Organomet Chem 2022. [DOI: 10.1002/aoc.6591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Davut Avcı
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Sümeyye Altürk
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Fatih Sönmez
- Faculty of Arts and Sciences, Department of Chemistry Sakarya University Sakarya Turkey
| | - Ömer Tamer
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Adil Başoğlu
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Yusuf Atalay
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Belma Zengin Kurt
- Faculty of Pharmacy, Department of Pharmaceutical Chemistry Bezmialem Vakif University Istanbul Turkey
| | - Necmi Dege
- Faculty of Arts and Sciences, Department of Physics Ondokuz Mayıs University Samsun Turkey
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Dege N, Özge Ö, Avcı D, Başoğlu A, Sönmez F, Yaman M, Tamer Ö, Atalay Y, Zengin Kurt B. Concentration effects on optical properties, DFT, crystal characterization and α-glucosidase activity studies: Novel Zn(II) complex. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 262:120072. [PMID: 34175761 DOI: 10.1016/j.saa.2021.120072] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Revised: 06/02/2021] [Accepted: 06/09/2021] [Indexed: 06/13/2023]
Abstract
A novel Zn(II) complex of 6-ClpicH and picH was synthesized and its structure was determined by XRD technique. The detailed experimental optical susceptibility and band gap, refractive index, linear polarizability, optical and electrical conductivity parameters in various concentrations were investigated by means of the UV-Vis spectroscopic data. The optical band gap, refractive index (n), linear optical susceptibility (χ(1)), third-order nonlinear optical susceptibility (χ(3)), second- and third-order nonlinear optical (β and γ) parameters were examined by using DFT/M06-L and ωB97XD/6-311++G(d,p) levels. The IC50 value of Zn(II) complex against α-glucosidase was also obtained at 0.44 mM. The experimental band gap of the Zn(II) complex at 13, 33, 44 and 94 µM concentrations in ethanol were found to be 4.38, 4.37, 4.35 and 4.28 eV, respectively. The third-order NLO susceptibility χ(3) parameter at 94 µM concentration corresponding to the photon energies of 4.6 and 5.7 eV in the UV-Vis region were observed at 206.6 × 10-13 and 294.3 × 10-13 esu, respectively. Besides, the theoretical χ(3) values were obtained at 50.58 × 10-13 and 20.37 × 10-13 esu by using M06-L level. These results indicate that Zn(II) complex could be an effective third-order NLO candidate material. In brief, the detailed theoretical and experimental structural, spectral and optical properties of the Zn(II) complex were presented comparatively.
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Affiliation(s)
- Necmi Dege
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139 Samsun, Turkey
| | - Özgen Özge
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Davut Avcı
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey.
| | - Adil Başoğlu
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey.
| | - Fatih Sönmez
- Sakarya University of Applied Sciences, Pamukova Vocational High School, 54055 Sakarya, Turkey
| | - Mavişe Yaman
- Ondokuz Mayıs University, Faculty of Arts and Sciences, Department of Physics, 55139 Samsun, Turkey
| | - Ömer Tamer
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Yusuf Atalay
- Sakarya University, Faculty of Arts and Sciences, Department of Physics, 54187 Sakarya, Turkey
| | - Belma Zengin Kurt
- Bezmialem Vakif University, Faculty of Pharmacy, Department of Pharmaceutical Chemistry, 34093 Istanbul, Turkey
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Avcı D, Saeedi Y, Başoğlu A, Dege N, Altürk S, Tamer Ö, Atalay Y. Novel Mn(II) and Zn(II) complexes of 6‐bromopicolinic acid as a potential optical material: Synthesis, spectral characterizations, linear, and nonlinear optical properties and density functional theory calculations. Appl Organomet Chem 2020. [DOI: 10.1002/aoc.6125] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Affiliation(s)
- Davut Avcı
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Yalda Saeedi
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Adil Başoğlu
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Necmi Dege
- Faculty of Arts and Sciences, Department of Physics Ondokuz Mayıs University Samsun Turkey
| | - Sümeyye Altürk
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Ömer Tamer
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
| | - Yusuf Atalay
- Faculty of Arts and Sciences, Department of Physics Sakarya University Sakarya Turkey
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Avcı D, Altürk S, Sönmez F, Tamer Ö, Başoğlu A, Atalay Y, Kurt BZ. Synthesis, DFT calculations and molecular docking study of mixed ligand metal complexes containing 4,4′-dimethyl-2,2′-bipyridyl as α-glucosidase inhibitors. J Mol Struct 2020. [DOI: 10.1016/j.molstruc.2019.127655] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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Avcı D, Altürk S, Sönmez F, Tamer Ö, Başoğlu A, Atalay Y, Zengin Kurt B, Dege N. Novel metal complexes containing 6-methylpyridine-2-carboxylic acid as potent α-glucosidase inhibitor: synthesis, crystal structures, DFT calculations, and molecular docking. Mol Divers 2020; 25:171-189. [PMID: 31965435 DOI: 10.1007/s11030-020-10037-x] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2019] [Accepted: 01/09/2020] [Indexed: 11/25/2022]
Abstract
The World Health Organization (WHO) report shows that diabetes mellitus (DM) will be one of the ten deadly diseases in the near future. The best way to prevent DM is to decrease blood glucose levels and keep under control; therefore, it is important to design and synthesize the effective inhibitors that can be used in the treatment of DM disease. In this respect, a series of ten metal complexes containing 6-methylpyridine-2-carboxylic acid {[Cr(6-mpa)2(H2O)2]·H2O·NO3, (1), [Mn(6-mpa)2(H2O)2], (2), [Ni(6-mpa)2(H2O)2]·2H2O, (3), [Hg(6-mpa)2(H2O)], (4), [Cu(6-mpa)2(Py)], (5), [Cu(6-mpa)2(H2O)]·H2O, (6), [Zn(6-mpa)2(H2O)]·H2O, (7), [Fe(6-mpa)3], (8), [Cd(6-mpa)2(H2O)2]·2H2O, (9), and [Co(6-mpa)2(H2O)2]·2H2O, (10)} were synthesized as α-glucosidase inhibitors. We found that the IC50 values of the synthesized complexes ranged from 0.247 ± 0.10 to > 600 μM against α-glucosidase. The spectral analyses for these complexes characterized by XRD and LC-MS/MS were also carried out by FT-IR and UV-Vis spectra. Additionally, the DFT/HSEh1PBE/6-311G(d,p)/LanL2DZ level was applied to obtain optimal molecular geometries and spectral behaviors as well as significant contributions to the electronic transitions for the complexes. The molecular docking study was also performed to display interactions between the target protein (the template structure Saccharomyces cerevisiae isomaltase) and the synthesized complexes (1-10).
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Affiliation(s)
- Davut Avcı
- Department of Physics, Faculty of Arts and Sciences, Sakarya University, 54187, Sakarya, Turkey.
| | - Sümeyye Altürk
- Department of Physics, Faculty of Arts and Sciences, Sakarya University, 54187, Sakarya, Turkey
| | - Fatih Sönmez
- Pamukova Vocational High School, Sakarya University of Applied Sciences, 54055, Sakarya, Turkey
| | - Ömer Tamer
- Department of Physics, Faculty of Arts and Sciences, Sakarya University, 54187, Sakarya, Turkey
| | - Adil Başoğlu
- Department of Physics, Faculty of Arts and Sciences, Sakarya University, 54187, Sakarya, Turkey
| | - Yusuf Atalay
- Department of Physics, Faculty of Arts and Sciences, Sakarya University, 54187, Sakarya, Turkey
| | - Belma Zengin Kurt
- Department of Pharmaceutical Chemistry, Faculty of Pharmacy, Bezmialem Vakif University, 34093, Istanbul, Turkey
| | - Necmi Dege
- Department of Physics, Faculty of Arts and Sciences, Ondokuz Mayıs University, 55139, Samsun, Turkey
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Novel Cu(II), Co(II) and Zn(II) metal complexes with mixed-ligand: Synthesis, crystal structure, α-glucosidase inhibition, DFT calculations, and molecular docking. J Mol Struct 2019. [DOI: 10.1016/j.molstruc.2019.07.039] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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Avcı D, Altürk S, Sönmez F, Tamer Ö, Başoğlu A, Atalay Y, Zengin Kurt B, Dege N. A novel series of mixed-ligand M(II) complexes containing 2,2′-bipyridyl as potent α-glucosidase inhibitor: synthesis, crystal structure, DFT calculations, and molecular docking. J Biol Inorg Chem 2019; 24:747-764. [DOI: 10.1007/s00775-019-01688-9] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2019] [Accepted: 07/10/2019] [Indexed: 01/07/2023]
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