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Patel KB, Patel RV, Ahmad I, Rajani D, Patel H, Mukherjee S, Kumari P. Design, synthesis, molecular docking, molecular dynamic simulation, and MMGBSA analysis of 7-O-substituted 5-hydroxy flavone derivatives. J Biomol Struct Dyn 2024; 42:6378-6392. [PMID: 37551031 DOI: 10.1080/07391102.2023.2243520] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 07/01/2023] [Indexed: 08/09/2023]
Abstract
A series of chrysin derivatives were designed, synthesized, and evaluated for their antibacterial activity against four different bacterial strains. We have synthesized new propyl-substituted and butyl-substituted chrysin-piperazine derivatives, which show marvellous inhibition against E. coli and S. aureus. The free hydroxyl group at the C-5 position of chrysin improved therapeutic efficacy in vivo and was a beneficial formulation for chemotherapy. All synthesized compounds were confirmed by various spectroscopic techniques such as IR, NMR, HPLC, and mass spectrometry. The compounds exhibited moderate to good inhibition, and their structure-activity relationship (SAR) has also been illustrated. Among the synthesised compounds, compounds 4 and 10 were the most active against S. pyogenes and E. coli, with 12.5 g/mL MICs; additionally, compound 12 exhibits significant activity on both the S. aureus and E. coli stains. Based on the promising activity profile and docking score of compound 12, it was selected for 100 ns MD simulation and post-dynamic binding free energy analysis within the active sites of S. aureus TyrRS (PDB ID: 1JIJ) and E. coli DNA GyrB (PDB ID: 6YD9) to investigate the stability of molecular contacts and to establish how the newly synthesized inhibitors fit together in the most stable conformations.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Kajalben B Patel
- Department of Chemistry, Sardar Vallabhbhai National Institute of Technology, Surat, Gujarat, India
| | - Rahul V Patel
- Department of Food Science and Biotechnology, Dongguk University-Seoul, Goyang-si, Gyeonggi-do, Korea
| | - Iqrar Ahmad
- Department of Pharmaceutical Chemistry, Prof. Ravindra Nikam College of Pharmacy, Dhule, Maharashtra, India
- Division of Computer Aided Drug Design, Department of Pharmaceutical Chemistry, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, Maharashtra, India
| | | | - Harun Patel
- Division of Computer Aided Drug Design, Department of Pharmaceutical Chemistry, R. C. Patel Institute of Pharmaceutical Education and Research, Shirpur, Maharashtra, India
| | | | - Premlata Kumari
- Department of Chemistry, Sardar Vallabhbhai National Institute of Technology, Surat, Gujarat, India
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2
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Kiven DE, Bine FK, Nkungli NK, Tamafo Fouegue AD, Tasheh SN, Ghogomu JN. Enhancing the charge transport and luminescence properties of ethyl 4-[( E)-(2-hydroxy-4-methoxyphenyl)methyleneamino]benzoate through complexation: a DFT and TD-DFT study. RSC Adv 2024; 14:18646-18662. [PMID: 38863822 PMCID: PMC11166190 DOI: 10.1039/d4ra02250e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Accepted: 06/04/2024] [Indexed: 06/13/2024] Open
Abstract
Organic light emitting diode (OLED) and organic solar cell (OSC) properties of ethyl 4-[(E)-(2-hydroxy-4-methoxyphenyl)methyleneamino]benzoate (EMAB) and its Pt2+, Pd2+, Ni2+, Ir3+, Rh3+, and Zn2+ complexes have been theoretically studied herein. Geometry optimizations have been performed via the r2SCAN-3c composite method while single-point calculations have been carried out at the PBE0-D3(BJ)/def2-TZVP level of theory. Results have shown that complexation with selected metal ions improves hole and electron transfer rates in Pt[EMAB]2 and Rh[EMAB]2 +. Specifically, the hole transport rate of Pt[EMAB]2, (k ct(h) = 6.15 × 1014 s-1), is found to be 44 times greater than that of [EMAB], (k ct(h) = 1.42 × 1013 s-1), whereas electron transport rate of Pt[EMAB]2, (k ct(e) = 4.6 × 1013 s-1) is 4 times that of EMAB (k ct(e) = 1.1 × 1013 s-1). Charge mobility for holes and electrons are equal to 19.182 cm2 V-1 s-1 and 1.431 cm2 V-1 s-1 respectively for Pt[EMAB]2, and equal to 4.11 × 10-1 cm2 V-1 s-1 and 3.43 × 10-1 cm2 V-1 s-1 for EMAB respectively. These results show that, charge transport in EMAB can be tuned for better performance through complexation with transition metals such as Pt2+. OSC properties of the complexes were also studied by comparing their HOMO/LUMO energies with those of (6,6)-phenyl-C61-butyric acid methyl ester (PCBM) and poly(3-hexylthiophene) (P3HT). It turned out that the energy gap of EMAB reduced significantly upon complexation from 2.904 eV to 0.56 eV in [Rh(EMAB)2]+ and to a lesser extent in the other complexes. The energy values of the HOMOs remained higher than those of PCBM while those of the LUMOs were found to be greater than that of P3HT with the exception of [Rh(EMAB)2]+. These findings show that the aforementioned species are good electron donors to PCBM. The open circuit voltage, V OC, of the compounds ranged between 0.705 × 10-19 V and 6.617 × 10-19 V, values that are good enough for practical usage in OSC applications. The UV-visible absorption spectra revealed absorption maxima well below 900 nm in all compounds, vital in the efficient functioning of solar cells. In general, this study has shown that platinoid complexation of EMAB can successfully modify both its OLED and OSC properties, making them better precursors in the electronic industry.
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Affiliation(s)
- Dinyuy Emmanuel Kiven
- Department of Chemistry, Faculty of Science, The University of Bamenda P. O. Box 39, Bambili Bamenda Cameroon
| | - Fritzgerald Kogge Bine
- Department of Fundamental and Cross-cutting Sciences, National Advanced School of Public Works P. O. Box 510 Yaounde Cameroon,
| | - Nyiang Kennet Nkungli
- Department of Chemistry, Faculty of Science, The University of Bamenda P. O. Box 39, Bambili Bamenda Cameroon
| | | | - Stanley Numbonui Tasheh
- Department of Chemistry, Faculty of Science, The University of Bamenda P. O. Box 39, Bambili Bamenda Cameroon
| | - Julius Numbonui Ghogomu
- Department of Chemistry, Faculty of Science, The University of Bamenda P. O. Box 39, Bambili Bamenda Cameroon
- Department of Chemistry, Research Unit of Noxious Chemistry and Environmental Engineering, Faculty of Science, University of Dschang P. O. Box 67 Dschang Cameroon
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3
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Yuriy K, Kusdemir G, Volodymyr P, Tüzün B, Taslimi P, Karatas OF, Anastasia K, Maryna P, Sayın K. A biochemistry-oriented drug design: synthesis, anticancer activity, enzymes inhibition, molecular docking studies of novel 1,2,4-triazole derivatives. J Biomol Struct Dyn 2024; 42:1220-1236. [PMID: 37671856 DOI: 10.1080/07391102.2023.2253906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2022] [Accepted: 03/28/2023] [Indexed: 09/07/2023]
Abstract
In this study, we researched the reactions of 5-(5-bromofuran-2-yl)-4-methyl-1,2,4-triazole-3-thiol and 5-thiophene-(3-ylmethyl)-4R-1,2,4-triazole-3-thiols with some halogen-containing compounds, a number of new compounds were synthesized (1.1-1.5 and 2.1-2.8). These compounds showed excellent to good inhibitory activities on acetylcholinesterase (AChE) and butyrylcholinesterase (BChE) enzymes. For obtaining the effects of these compounds on AChE and BChE enzymes were determined spectrophotometrically according to Ellman. IC50 values of these enzymes were ranging between 1.63 and 17.68 nM for AChE and 8.71 and 84.02 nM for BChE. After, prostate cancer is the second leading cause of cancer-related mortality for men over the age of 65 in developed countries. Current treatment options remain limited in the treatment of advanced-stage prostate cancer leading to biochemical recurrence in almost 40% of the patients. Therefore, there is an urgent need for development of novel therapeutic tools for treatment of prostate cancer patients. In this study, we aimed at analyzing the potential of all compounds against prostate cancer cells. We found that, of the tested compounds, 2.1, 2.2 and 2.3 showed significant cytotoxic activities against PC3 prostate cancer cells, although their effect on the viability of normal prostate cells was limited. These findings suggest their selective targeting potential for prostate cancer cells and offer them as candidate therapeutic agents against prostate cancer. The inhibitory activities of some chemical compounds, such as (1.1-1.5 and 2.1-2.8) were assessed by performing the molecular docking study in the presence of AChE, BChE and prostate cancer protein. MM/GBSA methods are calculated binding free energy. Finally, ADME/T analysis was performed to examine the drug properties of the 13 studied molecules.Communicated by Ramaswamy H. Sarma.
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Affiliation(s)
- Karpenko Yuriy
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Gulnur Kusdemir
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Parchenko Volodymyr
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Burak Tüzün
- Plant and Animal Production Department, Technical Sciences Vocational School of Sivas, Sivas Cumhuriyet University, Sivas, Turkey
| | - Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Omer Faruk Karatas
- Molecular Biology and Genetics Department, Erzurum Technical University, Erzurum, Turkey
- High Technology Application and Research Center, Erzurum Technical University, Erzurum, Turkey
| | - Khilkovets Anastasia
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Parchenko Maryna
- Department of Natural Sciences for Foreign Students and Toxicological Chemistry, Zaporizhzhia State Medical University, Zaporizhzhia, Ukraine
| | - Koray Sayın
- Deparment of Chemistry, Sivas Cumhuriyet University, Sivas, Turkey
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2′-Hydroxy-4′,5′-dimethoxyacetophenone Exhibit Collagenase, Aldose Reductase Inhibition, and Anticancer Activity Against Human Leukemic Cells: An In Vitro, and In Silico Study. Mol Biotechnol 2022; 65:881-890. [DOI: 10.1007/s12033-022-00588-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2022] [Accepted: 10/14/2022] [Indexed: 11/06/2022]
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5
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Zhou Z, Wang Y, Zhu L, Dang D, Zhang Z. Tributylphosphine-catalyzed aziridine-based cycloaddition polymerization toward thiacyclic polymers. Polym Chem 2022. [DOI: 10.1039/d2py00569g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Cycloaddition polymerization of bis(N-sulfonyl aziridine)s with diisocyanates in the presence of tributylphosphine allows the facile synthesis of poly(thiazolidin-2-imine)s.
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Affiliation(s)
- Zhi Zhou
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou, 510006, P. R. China
| | - Ying Wang
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou, 510006, P. R. China
| | - Linlin Zhu
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou, 510006, P. R. China
| | - Dai Dang
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou, 510006, P. R. China
| | - Zhen Zhang
- School of Chemical Engineering and Light Industry, Guangdong University of Technology, Guangzhou, 510006, P. R. China
- Key Laboratory of Polymer Processing Engineering (South China University of Technology), Ministry of Education, Guangzhou 510641, P. R. China
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6
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Singh G, Devi A, Mohit, Diksha, Suman, Saini A, Kaur JD, Gupta S, Vikas. Synthesis, “turn-on” fluorescence signals towards Zn 2+ and Hg 2+ and monoamine oxidase A inhibitory activity using a molecular docking approach of morpholine analogue Schiff base linked organosilanes. NEW J CHEM 2022. [DOI: 10.1039/d2nj03767j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
A new set of morpholine analogue Schiff base linked organosilanes (5a–5c) was prepared.
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Affiliation(s)
- Gurjaspreet Singh
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Anita Devi
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Mohit
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Diksha
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Suman
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Anamika Saini
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Jashan Deep Kaur
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Sofia Gupta
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
| | - Vikas
- Department of Chemistry & Centre of Advanced Studies, Panjab University, Chandigarh, 160014, India
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7
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Khalilov AN, Tüzün B, Taslimi P, Tas A, Tuncbilek Z, Cakmak NK. Cytotoxic effect, spectroscopy, DFT, enzyme inhibition, and moleculer docking studies of some novel mesitylaminopropanols: Antidiabetic and anticholinergics and anticancer potentials. J Mol Liq 2021. [DOI: 10.1016/j.molliq.2021.117761] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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8
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Synthesis, bioinformatics and biological evaluation of novel pyridine based on 8-hydroxyquinoline derivatives as antibacterial agents: DFT, molecular docking and ADME/T studies. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130934] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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9
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Aydin D, Karuk Elmas SN, Savran T, Arslan FN, Sadi G, Yilmaz I. An ultrasensitive ″OFF–ON″ fluorogenic sensor based on thiazole derivative for Zn2+: Food supplement, water and bio–imaging applications. J Photochem Photobiol A Chem 2021. [DOI: 10.1016/j.jphotochem.2021.113459] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
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10
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Yavuz SÇ, Akkoç S, Tüzün B, Şahin O, Saripinar E. Efficient synthesis and molecular docking studies of new pyrimidine-chromeno hybrid derivatives as potential antiproliferative agents. SYNTHETIC COMMUN 2021. [DOI: 10.1080/00397911.2021.1922920] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Affiliation(s)
- Sevtap Çağlar Yavuz
- Department of Chemistry, Faculty of Science, Erciyes University, Kayseri, Turkey
- Department of Veterinary Science, Şefaatli Vocational School, Yozgat Bozok University, Yozgat, Turkey
| | - Senem Akkoç
- Department of Basic Pharmaceutical Sciences, Faculty of Pharmacy, Süleyman Demirel University, Isparta, Turkey
| | - Burak Tüzün
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| | - Onur Şahin
- Scientific and Technological Research Application and Research Center, Sinop University, Sinop, Turkey
| | - Emin Saripinar
- Department of Chemistry, Faculty of Science, Erciyes University, Kayseri, Turkey
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11
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TÜZÜN B. Examination of anti-oxidant properties and molecular docking parameters of some compounds in human body. ACTA ACUST UNITED AC 2020. [DOI: 10.33435/tcandtc.781008] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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12
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Taslimi P, Kocyigit UM, Tüzün B, Kirici M. Biological effects and molecular docking studies of Catechin 5-O-gallate: antioxidant, anticholinergics, antiepileptic and antidiabetic potentials. J Biomol Struct Dyn 2020; 40:2489-2497. [PMID: 33146092 DOI: 10.1080/07391102.2020.1840440] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Parham Taslimi
- Department of Biotechnology, Faculty of Science, Bartin University, Bartin, Turkey
| | - Umit M. Kocyigit
- Department of Basic Pharmaceutical Sciences, Division of Biochemistry, Faculty of Pharmacy, Sivas Cumhuriyet University, Sivas, Turkey
| | - Burak Tüzün
- Department of Chemistry, Faculty of Science, Sivas Cumhuriyet University, Sivas, Turkey
| | - Mahinur Kirici
- Department of Chemistry, Faculty of Arts and Sciences, Bingol University, Turkey
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