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Liu J, Feng J, Zhu F, Chen Y, Chen J, Li Y, Ying M, Wu B. Analysis of the relationships between interferon-stimulated genes and anti-SSA/Ro 60 antibodies in primary Sjögren's syndrome patients via multiomics and machine learning methods. Int Immunopharmacol 2025; 144:113652. [PMID: 39577221 DOI: 10.1016/j.intimp.2024.113652] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2024] [Revised: 11/06/2024] [Accepted: 11/14/2024] [Indexed: 11/24/2024]
Abstract
BACKGROUND Primary Sjögren's syndrome (pSS) is a chronic systemic autoimmune disease characterized by lymphocyte infiltration of the exocrine glands. Interferon-stimulated genes (ISGs) are often upregulated in patients with pSS, and anti-SSA/Ro 60 antibodies are among the main items detected in pSS. However, the relationship between ISGs and anti-SSA/Ro 60 antibodies in pSS remains unclear. Therefore, our study aimed to explore the relationships between ISGs and anti-SSA/Ro 60 antibodies and identify key genes involved in pSS. METHODS Transcriptome sequencing and microarray data of PBMC, parotid and labial glands tissues from pSS patients (1341 samples) were downloaded from the GEO database and used in this analysis. A linear model was used to analyze the relationship between ISGs and anti-SSA/Ro 60 antibodies. ELISA was used to measure the levels of anti-SSA/Ro 60 antibodies in the whole blood of pSS patients. Machine learning methods were used to construct a diagnostic model, and further validation was conducted with external datasets and RT-qPCR. RESULTS After differential analysis of the PBMCs and tissues, 22 and 160 DEGs, respectively, were identified. There was a positive correlation between ISGs and anti-SSA/Ro 60 antibodies in the PBMCs of pSS patients, and there was a significant positive correlation between ISG expression in the PBMCs and tissues of pSS patients. The expression levels of ISGs were increased in the PBMCs and tissues of pSS patients with positive anti-SSA/Ro 60 antibody results, and the ESSDAI, focus scores and CD45 levels were increased. Finally, the expression of EPSTI1, EIF2AK2, IFI44, RSAD2, and OAS2 in PBMCs can be used to diagnose pSS. CONCLUSION In patients with pSS, a positive correlation was observed between ISGs and anti-SSA/Ro 60 antibodies. The expression of ISGs reflects the disease severity and pathology scores of pSS patients. Through bioinformatics analysis combined with our clinical data, we identified five key genes with potential diagnostic value for pSS.
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Affiliation(s)
- Jinkun Liu
- Chongqing Key Laboratory of Traditional Chinese Medicine to Prevent and Treat Autoimmune Diseases, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, PR China; First Affiliated Hospital of Chongqing University of Chinese Medicine, Chongqing University of Chinese Medicine, Chongqing 400021, PR China
| | - Jing Feng
- Chongqing Key Laboratory of Traditional Chinese Medicine to Prevent and Treat Autoimmune Diseases, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, PR China; First Affiliated Hospital of Chongqing University of Chinese Medicine, Chongqing University of Chinese Medicine, Chongqing 400021, PR China
| | - Fenglin Zhu
- First Affiliated Hospital of Chongqing University of Chinese Medicine, Chongqing University of Chinese Medicine, Chongqing 400021, PR China; Department of Rheumatology, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, PR China
| | - Yingzhou Chen
- First Affiliated Hospital of Chongqing University of Chinese Medicine, Chongqing University of Chinese Medicine, Chongqing 400021, PR China; Pathology Department, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, PR China
| | - Jingru Chen
- First Affiliated Hospital of Chongqing University of Chinese Medicine, Chongqing University of Chinese Medicine, Chongqing 400021, PR China; Department of Rheumatology, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, PR China
| | - Yanhui Li
- Chongqing Key Laboratory of Traditional Chinese Medicine to Prevent and Treat Autoimmune Diseases, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, PR China; First Affiliated Hospital of Chongqing University of Chinese Medicine, Chongqing University of Chinese Medicine, Chongqing 400021, PR China
| | - Min Ying
- Chongqing Cancer Multi-omics Big Data Application Engineering Research Center, Chongqing University Cancer Hospital, Chongqing 400030, PR China.
| | - Bin Wu
- First Affiliated Hospital of Chongqing University of Chinese Medicine, Chongqing University of Chinese Medicine, Chongqing 400021, PR China; Department of Rheumatology, Chongqing Hospital of Traditional Chinese Medicine, Chongqing 400021, PR China.
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Mahroum N, Elsalti A, Al Shawaf M, Darkhabani M, Alwani A, Seida R, Ertas MT, Simsek AG, Awad M, Habra M, Alrifaai MA, Bogdanos D, Shoenfeld Y. Artificial intelligence meets the world experts; updates and novel therapies in autoimmunity - The 14th international congress on autoimmunity 2024 (AUTO14), Ljubljana. Autoimmun Rev 2025; 24:103698. [PMID: 39571671 DOI: 10.1016/j.autrev.2024.103698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2024] [Revised: 11/16/2024] [Accepted: 11/17/2024] [Indexed: 11/26/2024]
Abstract
The bi-annual international congress on autoimmunity is a huge opportunity for the medical community to discuss the latest updates in the field. During the 14th congress 2024 (AUTO14) in Ljubljana, artificial intelligence (AI) occupied special attention due to its recent and ongoing unequivocal role in various medical fields including autoimmunity. For instance, through a challenging debate between world-experts and the most popular AI bot used (ChatGPT), several clinical cases including a case of vasculitis were discussed in the plenary sessions. ChatGPT agreed with the clinical decisions made by the experts nevertheless, the bot added additional aspects related to the specific case. In this regard, ChatGPT emphasized the need for osteoporosis prophylaxis in a patient planned to be treated with systemic steroids for a long time. Furthermore, AUTO14 included the newest updates on most autoimmune disorders, distributed among tens of sessions. Among others, infection and autoimmunity, the sequalae of the pandemic of COVID-19, as well as COVID-19 vaccines were discussed as well. Due to the high numbers of the works presented, and for ensuring that important updates are not missed; we divided our paper into sections. The subtitles throughout the paper correspond to different sessions of the congress, all presenting new updates in the field. A figure aiding in navigating throughout the paper was also provided.
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Affiliation(s)
- Naim Mahroum
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey.
| | - Abdulrahman Elsalti
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey
| | - Maisam Al Shawaf
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey
| | - Mohammad Darkhabani
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey
| | - Abdulrahman Alwani
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey
| | - Ravend Seida
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey
| | | | | | - Mustafa Awad
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey
| | - Mona Habra
- International School of Medicine, Istanbul Medipol University, Istanbul, Turkey
| | | | - Dimitrios Bogdanos
- Department of Rheumatology and Clinical Immunology, University Hospital of Larisa, School of Medicine, University of Thessaly, Larissa, Greece
| | - Yehuda Shoenfeld
- Zabludowicz Center for autoimmune diseases, Sheba Medical Center, Ramat-Gan, Israel; Reichman University, Herzliya, Israel
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Baldini C, Fulvio G, La Rocca G, Ferro F. Update on the pathophysiology and treatment of primary Sjögren syndrome. Nat Rev Rheumatol 2024; 20:473-491. [PMID: 38982205 DOI: 10.1038/s41584-024-01135-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/04/2024] [Indexed: 07/11/2024]
Abstract
Sjögren syndrome or Sjögren disease is a chronic form of autoimmune epithelitis characterized by lymphocytic infiltration of the exocrine glands, particularly the salivary and lacrimal glands, leading to progressive glandular dysfunction and subsequent xerostomia and xerophthalmia. Other common manifestations include pain and fatigue, various systemic manifestations and non-Hodgkin's lymphoma. Sjögren syndrome is therefore a complex and disabling disease associated with a reduced quality of life and with considerable long-term damage. Most of the available treatments are merely symptomatic with limited efficacy in both preventing glandular damage and suppressing systemic disease activity. In the past 10 years, great progress has been made in understanding the pathophysiology of Sjögren syndrome, opening new avenues towards a more targeted and individualized therapeutic approach to the disease. Indeed, several randomized controlled trials have just been completed or are poised to commence evaluating the effectiveness of novel drugs targeting both innate and adaptive immune pathways, including pro-inflammatory cytokines, the type I interferon system, B cell activation, B cell and T cell co-stimulation pathway, and ectopic germinal centre formation. Novel clinical trials are also ongoing exploring various targeted approaches (that is, IgG recycling inhibition, nuclease therapy and CAR-T cell therapy) for Sjögren syndrome.
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Affiliation(s)
- Chiara Baldini
- Rheumatology Unit, Department of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy.
| | - Giovanni Fulvio
- Rheumatology Unit, Department of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy
| | - Gaetano La Rocca
- Rheumatology Unit, Department of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy
| | - Francesco Ferro
- Rheumatology Unit, Department of Clinical and Experimental Medicine, University of Pisa, Pisa, Italy
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Mahla RS. Decoding Sjögren syndrome: A comprehensive approach to multiparametric diagnosis: comment on the article by Bettacchioli et al. Arthritis Rheumatol 2024; 76:1162-1163. [PMID: 38321957 DOI: 10.1002/art.42821] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Accepted: 01/24/2024] [Indexed: 02/08/2024]
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Bettacchioli E, Saraux A, Foulquier N, Cornec D, Devauchelle-Pensec V. Reply. Arthritis Rheumatol 2024; 76:1163-1164. [PMID: 38321927 DOI: 10.1002/art.42820] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Accepted: 01/24/2024] [Indexed: 02/08/2024]
Affiliation(s)
- Eléonore Bettacchioli
- Lymphocytes B, Autoimmunité et Immunothérapies, UMR1227, INSERM, University of Western Brittany and Centre Hospitalier Universitaire de Brest, Brest, France
| | - Alain Saraux
- Lymphocytes B, Autoimmunité et Immunothérapies, UMR1227, INSERM, University of Western Brittany and Centre Hospitalier Universitaire de Brest, Brest, France
| | - Nathan Foulquier
- Lymphocytes B, Autoimmunité et Immunothérapies, UMR1227, INSERM, University of Western Brittany and Centre Hospitalier Universitaire de Brest, Brest, France
| | - Divi Cornec
- Lymphocytes B, Autoimmunité et Immunothérapies, UMR1227, INSERM, University of Western Brittany and Centre Hospitalier Universitaire de Brest, Brest, France
| | - Valérie Devauchelle-Pensec
- Lymphocytes B, Autoimmunité et Immunothérapies, UMR1227, INSERM, University of Western Brittany and Centre Hospitalier Universitaire de Brest, Brest, France
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Li XX, Maitiyaer M, Tan Q, Huang WH, Liu Y, Liu ZP, Wen YQ, Zheng Y, Chen X, Chen RL, Tao Y, Yu SL. Emerging biologic frontiers for Sjogren's syndrome: Unveiling novel approaches with emphasis on extra glandular pathology. Front Pharmacol 2024; 15:1377055. [PMID: 38828450 PMCID: PMC11140030 DOI: 10.3389/fphar.2024.1377055] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2024] [Accepted: 04/29/2024] [Indexed: 06/05/2024] Open
Abstract
Primary Sjögren's Syndrome (pSS) is a complex autoimmune disorder characterized by exocrine gland dysfunction, leading to dry eyes and mouth. Despite growing interest in biologic therapies for pSS, FDA approval has proven challenging due to trial complications. This review addresses the absence of a molecular-target-based approach to biologic therapy development and highlights novel research on drug targets and clinical trials. A literature search identified potential pSS treatment targets and recent advances in molecular understanding. Overlooking extraglandular symptoms like fatigue and depression is a notable gap in trials. Emerging biologic agents targeting cytokines, signal pathways, and immune responses have proven efficacy. These novel therapies could complement existing methods for symptom alleviation. Improved grading systems accounting for extraglandular symptoms are needed. The future of pSS treatment may involve gene, stem-cell, and tissue-engineering therapies. This narrative review offers insights into advancing pSS management through innovative biologic interventions.
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Affiliation(s)
- Xiao Xiao Li
- Department of Rheumatology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Maierhaba Maitiyaer
- Department of Rheumatology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Qing Tan
- Department of Rheumatology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Wen Hui Huang
- Department of Rheumatology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Yu Liu
- Department of Clinical Medicine, The First Clinical Medical School of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Zhi Ping Liu
- Ophthalmic Center, the Second Affiliated Hospital of Guangzhou Medical University, Guangzhou, China
| | - Yue Qiang Wen
- Department of Nephrology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Yu Zheng
- Department of Urology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Xing Chen
- Department of Geriatrics, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Rui Lin Chen
- Department of Rheumatology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Yi Tao
- Department of Rheumatology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
| | - Shui Lian Yu
- Department of Rheumatology, The Second Affiliated Hospital of Guangzhou Medical University, Guangzhou Medical University, Guangzhou, China
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Pastva O, Klein K. Long Non-Coding RNAs in Sjögren's Disease. Int J Mol Sci 2024; 25:5162. [PMID: 38791207 PMCID: PMC11121283 DOI: 10.3390/ijms25105162] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2024] [Revised: 04/25/2024] [Accepted: 04/28/2024] [Indexed: 05/26/2024] Open
Abstract
Sjögren's disease (SjD) is a heterogeneous autoimmune disease characterized by severe dryness of mucosal surfaces, particularly the mouth and eyes; fatigue; and chronic pain. Chronic inflammation of the salivary and lacrimal glands, auto-antibody formation, and extra-glandular manifestations occur in subsets of patients with SjD. An aberrant expression of long, non-coding RNAs (lncRNAs) has been described in many autoimmune diseases, including SjD. Here, we review the current literature on lncRNAs in SjD and their role in regulating X chromosome inactivation, immune modulatory functions, and their potential as biomarkers.
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Affiliation(s)
- Ondřej Pastva
- Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3008 Bern, Switzerland
- Department for BioMedical Research (DBMR), University of Bern, 3008 Bern, Switzerland
| | - Kerstin Klein
- Department of Rheumatology and Immunology, Inselspital, Bern University Hospital, University of Bern, 3008 Bern, Switzerland
- Department for BioMedical Research (DBMR), University of Bern, 3008 Bern, Switzerland
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