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Singh Y, Geringer SA, Demchenko AV. Synthesis and Glycosidation of Anomeric Halides: Evolution from Early Studies to Modern Methods of the 21st Century. Chem Rev 2022; 122:11701-11758. [PMID: 35675037 DOI: 10.1021/acs.chemrev.2c00029] [Citation(s) in RCA: 21] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Advances in synthetic carbohydrate chemistry have dramatically improved access to common glycans. However, many novel methods still fail to adequately address challenges associated with chemical glycosylation and glycan synthesis. Since a challenge of glycosylation has remained, scientists have been frequently returning to the traditional glycosyl donors. This review is dedicated to glycosyl halides that have played crucial roles in shaping the field of glycosciences and continue to pave the way toward our understanding of chemical glycosylation.
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Affiliation(s)
- Yashapal Singh
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Scott A Geringer
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Alexei V Demchenko
- Department of Chemistry and Biochemistry, University of Missouri-St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States.,Department of Chemistry, Saint Louis University, 3501 Laclede Avenue, St. Louis, Missouri 63103, United States
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2
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Panza M, Pistorio SG, Stine KJ, Demchenko AV. Automated Chemical Oligosaccharide Synthesis: Novel Approach to Traditional Challenges. Chem Rev 2018; 118:8105-8150. [PMID: 29953217 PMCID: PMC6522228 DOI: 10.1021/acs.chemrev.8b00051] [Citation(s) in RCA: 213] [Impact Index Per Article: 35.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Advances in carbohydrate chemistry have certainly made common oligosaccharides much more accessible. However, many current methods still rely heavily upon specialized knowledge of carbohydrate chemistry. The application of automated technologies to chemical and life science applications such as genomics and proteomics represents a vibrant field. These automated technologies also present opportunities for their application to organic synthesis, including that of the synthesis of oligosaccharides. However, application of automated methods to the synthesis of carbohydrates is an underdeveloped area as compared to other classes of biomolecules. The overarching goal of this review article is to present the advances that have been made at the interface of carbohydrate chemistry and automated technology.
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Affiliation(s)
- Matteo Panza
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Salvatore G. Pistorio
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Keith J. Stine
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
| | - Alexei V. Demchenko
- Department of Chemistry and Biochemistry, University of Missouri–St. Louis, One University Boulevard, St. Louis, Missouri 63121, United States
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Kanie Y, Kanie O. Addressing the glycan complexity by using mass spectrometry: In the pursuit of decoding glycologic. ACTA ACUST UNITED AC 2017. [DOI: 10.7243/2052-9341-5-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Abstract
The development of glycobiology relies on the sources of particular oligosaccharides in their purest forms. As the isolation of the oligosaccharide structures from natural sources is not a reliable option for providing samples with homogeneity, chemical means become pertinent. The growing demand for diverse oligosaccharide structures has prompted the advancement of chemical strategies to stitch sugar molecules with precise stereo- and regioselectivity through the formation of glycosidic bonds. This Review will focus on the key developments towards chemical O-glycosylations in the current century. Synthesis of novel glycosyl donors and acceptors and their unique activation for successful glycosylation are discussed. This Review concludes with a summary of recent developments and comments on future prospects.
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Affiliation(s)
- Rituparna Das
- Department of Chemical SciencesIndian Institute of Science Education and Research (IISER) KolkataMohanpurNadia741246India
| | - Balaram Mukhopadhyay
- Department of Chemical SciencesIndian Institute of Science Education and Research (IISER) KolkataMohanpurNadia741246India
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Mukherjee S, Brooks WLA, Dai Y, Sumerlin BS. Doubly-dynamic-covalent polymers composed of oxime and oxanorbornene links. Polym Chem 2016. [DOI: 10.1039/c5py02046h] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Two sets of reversible covalent linkages distributed in series along a polymer backbone were used to prepare a new class of doubly dynamic-covalent polymers capable of reversibly dissociatingviatwo distinct pathways.
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Affiliation(s)
- Soma Mukherjee
- George & Josephine Butler Polymer Research Laboratory
- Center for Macromolecular Science & Engineering
- Department of Chemistry
- University of Florida
- Gainesville
| | - William. L. A. Brooks
- George & Josephine Butler Polymer Research Laboratory
- Center for Macromolecular Science & Engineering
- Department of Chemistry
- University of Florida
- Gainesville
| | - Yuqiong Dai
- George & Josephine Butler Polymer Research Laboratory
- Center for Macromolecular Science & Engineering
- Department of Chemistry
- University of Florida
- Gainesville
| | - Brent S. Sumerlin
- George & Josephine Butler Polymer Research Laboratory
- Center for Macromolecular Science & Engineering
- Department of Chemistry
- University of Florida
- Gainesville
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Bennett CS. Principles of modern solid-phase oligosaccharide synthesis. Org Biomol Chem 2014; 12:1686-98. [DOI: 10.1039/c3ob42343c] [Citation(s) in RCA: 40] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
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7
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Wong CH, Zimmerman SC. Orthogonality in organic, polymer, and supramolecular chemistry: from Merrifield to click chemistry. Chem Commun (Camb) 2013; 49:1679-95. [PMID: 23282586 DOI: 10.1039/c2cc37316e] [Citation(s) in RCA: 228] [Impact Index Per Article: 20.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
The concept of orthogonality has been applied to many areas of chemistry, ranging from wave functions to chromatography. But it was Barany and Merrifield's orthogonal protecting group strategy that paved the way for solid phase peptide syntheses, other important classes of biomaterials such as oligosaccharides and oligonucleotides, and ultimately to a term in widespread usage that is focused on chemical reactivity and binding selectivity. The orthogonal protection strategy has been extended to the development of orthogonal activation, and recently the click reaction, for streamlining organic synthesis. The click reaction and its variants are considered orthogonal as the components react together in high yield and in the presence of many other functional groups. Likewise, supramolecular building blocks can also be orthogonal, thereby enabling programmed self-assembly, a superb strategy to create complex architectures. Overall, orthogonal reactions and supramolecular interactions have dramatically improved the syntheses, the preparation of functional materials, and the self-assembly of nanoscale structures.
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Affiliation(s)
- Chun-Ho Wong
- Department of Chemistry, University of Illinois at Urbana-Champaign, 600 S Mathews Avenue, Urbana, IL 61801, USA
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8
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Yasomanee JP, Demchenko AV. From Stereocontrolled Glycosylation to Expeditious Oligosaccharide Synthesis. TRENDS GLYCOSCI GLYC 2013. [DOI: 10.4052/tigg.25.13] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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9
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An improved method for the synthesis of protected glycosyl fluorides from thioglycosides using N,N-diethylaminosulfur trifluoride (DAST). Carbohydr Res 2012; 359:81-91. [DOI: 10.1016/j.carres.2012.07.003] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2012] [Revised: 07/01/2012] [Accepted: 07/04/2012] [Indexed: 11/22/2022]
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Nguyen SH, Trotta AH, Cao J, Straub TJ, Bennett CS. Direct O-glycosidation of resin bound thioglycosides. Org Biomol Chem 2012; 10:2373-6. [PMID: 22261792 DOI: 10.1039/c2ob06883d] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The application of the safety-catch linker concept to solid-phase glycoconjugate synthesis is described. The process allows for direct conjugation of resin bound glycans to complex aglycones during cleavage. Large excesses of either coupling partner are not required, and even very hindered alcohols serve as acceptors in the reaction.
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Affiliation(s)
- Son Hong Nguyen
- Department of Chemistry, Tufts University, Medford, MA 02155, USA
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Komba S, Terauchi T, Machida S. A Regio- and Stereo-selective Parallel Synthesis of Five Types of Trigalactoses on a Solid Support as a Model of a Combinatorial Oligosaccharide Library. J Appl Glycosci (1999) 2010. [DOI: 10.5458/jag.jag.jag-2010_006] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022] Open
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12
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Kim EJ, Gray GR. Use of ionically tagged glycosyl donors in the synthesis of oligosaccharide libraries. Bioorg Med Chem Lett 2009; 19:6679-81. [DOI: 10.1016/j.bmcl.2009.10.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2009] [Revised: 09/26/2009] [Accepted: 10/01/2009] [Indexed: 10/20/2022]
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13
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Smoot JT, Demchenko AV. Oligosaccharide synthesis: from conventional methods to modern expeditious strategies. Adv Carbohydr Chem Biochem 2009; 62:161-250. [PMID: 19501706 DOI: 10.1016/s0065-2318(09)00005-5] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
Affiliation(s)
- James T Smoot
- Department of Chemistry and Biochemistry, University of Missouri, St. Louis, MO 63121, USA
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Daikoku S, Kurimoto A, Mutsuga S, Ako T, Kanemitsu T, Shioiri Y, Ohtake A, Kato R, Saotome C, Ohtsuka I, Koroghi S, Sarkar SK, Tobe A, Adachi S, Suzuki K, Kanie O. Ion-trap mass spectrometry unveils the presence of isomeric oligosaccharides in an analyte: stage-discriminated correlation of energy-resolved mass spectrometry. Carbohydr Res 2009; 344:384-94. [DOI: 10.1016/j.carres.2008.11.020] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2008] [Revised: 11/17/2008] [Accepted: 11/30/2008] [Indexed: 10/21/2022]
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Suzuki K, Tobe A, Adachi S, Daikoku S, Hasegawa Y, Shioiri Y, Kobayashi M, Kanie O. N-Hexyl-4-aminobutyl glycosides for investigating structures and biological functions of carbohydrates. Org Biomol Chem 2009; 7:4726-33. [DOI: 10.1039/b909556j] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
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Shioiri Y, Suzuki K, Kanie O. Mechanism of a gas-phase dissociation reaction of 4-aminobutyl glycosides under CID MS/MS conditions. JOURNAL OF MASS SPECTROMETRY : JMS 2008; 43:1132-1139. [PMID: 18324614 DOI: 10.1002/jms.1397] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
The assembly of monosaccharides during the synthetic process of glycan structures is responsible for the diversity of this family of molecules. Because of the complexity of the glycan structure, synthesis of oligosaccharides and structural analysis have been difficult tasks. During efforts to develop glycosides carrying an aglycon that can be used in both functional and structural investigations, we found that 4-aminobutyl glycosides fulfill these criteria. We also observed that the glycosidic linkage underwent an interesting dissociation reaction under collision-induced MS/MS, and that the reaction product is very useful in structural investigation based on mass spectrometry, especially since it provides information regarding anomeric configurations. Despite its importance, the reaction mechanism of the dissociation is not fully understood. For this reason, we studied the mechanism by synthesizing possible products and used them in detailed analyses based on energy-resolved mass spectrometry where the energy dependence of the dissociation reaction was analyzed under collision-induced dissociation conditions. As a result of spectral match with one of synthesized reference compounds, it was suggested that the dissociation reaction to generate a C-ion species and a pyrrolidine took place through a five-membered transition state in two-step reaction sequence.
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Affiliation(s)
- Yuki Shioiri
- Tokyo Institute of Technology, Graduate School of Bioscience and Biotechnology, 4529 Nagatsuta-cho, Midori-ku, Yokohama, Japan
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Daikoku S, Ako T, Kurimoto A, Kanie O. Anomeric information obtained from a series of synthetic trisaccharides using energy resolved mass spectra. JOURNAL OF MASS SPECTROMETRY : JMS 2007; 42:714-23. [PMID: 17511018 DOI: 10.1002/jms.1196] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
The majority of structural investigations of oligosaccharides based on mass spectrometry use naturally occurring oligosaccharides, which do not allow extracting any common feature associated with anomeric structures and linkage positions. In order to address the issue to find such characteristics possibly contained in oligosaccharide structure, a synthetic combinatorial trisaccharide library was analyzed. The trisaccharides used in the analysis consisted of L-fucose, D-galactose and D-glucose, in which individual glycosidic linkages existed in either alpha- or beta-anomers. The analysis of energy-resolved mass spectra (ERMS) and the scattered plot analysis of some parameters obtained from ERMS for a series of trisaccharides revealed that lower activation energy was required for the dissociation of alpha-glycosides of these sugars compared to those of the corresponding beta-anomers. It is suggested that this finding may be useful in structural analysis of natural oligosaccharides.
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Affiliation(s)
- Shusaku Daikoku
- Mitsubishi Kagaku Institute of Life Sciences, Machida-shi, Tokyo, Japan
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