1
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Tao Q, Li YN, Tang WJ, Liu PY, Yu F, He YP. Di-ortho-C H arylation of phenylalanine: A bimetallic interaction between Pd(IV)-Ag(I). Tetrahedron Lett 2021. [DOI: 10.1016/j.tetlet.2021.153158] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
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2
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Niu PP, Liu PY, Meng YN, Yu F, He YP. MIA-Directed 2-Pyridione-Enabled Selective Ortho-C–H Arylation of Phenylalanine: A Mechanistic Study. J Org Chem 2021; 86:3096-3106. [PMID: 33442983 DOI: 10.1021/acs.joc.0c02872] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Peng-Peng Niu
- Key Laboratory of Petrochemical Catalytic Science and Technology, Liaoning Shihua University, Dandong Road West 1, Fushun 113001, China
| | - Peng-Yu Liu
- Key Laboratory of Petrochemical Catalytic Science and Technology, Liaoning Shihua University, Dandong Road West 1, Fushun 113001, China
| | - Yue-Ning Meng
- Key Laboratory of Petrochemical Catalytic Science and Technology, Liaoning Shihua University, Dandong Road West 1, Fushun 113001, China
| | - Fang Yu
- Key Laboratory of Petrochemical Catalytic Science and Technology, Liaoning Shihua University, Dandong Road West 1, Fushun 113001, China
| | - Yu-Peng He
- Key Laboratory of Petrochemical Catalytic Science and Technology, Liaoning Shihua University, Dandong Road West 1, Fushun 113001, China
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3
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Bischoff M, Mayer P, Meyners C, Hausch F. Enantioselective Synthesis of a Tricyclic, sp 3 -Rich Diazatetradecanedione: an Amino Acid-Based Natural Product-Like Scaffold. Chemistry 2020; 26:4677-4681. [PMID: 31846111 PMCID: PMC7187416 DOI: 10.1002/chem.201905144] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 12/06/2019] [Indexed: 01/21/2023]
Abstract
6-, 7-, and 8-membered rings are assembled from a linear precursor by successive cyclisation reactions to construct a tricyclic diazatricyclo[6.5.1.04, 9 ]-tetradecanedione scaffold. Advanced building blocks based on d-aspartic acid and l-pyroglutamic acid were combined by a sp3 -sp2 Negishi coupling. A carbamate-guided syn-diastereoselective epoxidation followed by an intramolecular epoxide opening allowed the construction of the piperidine ring. An efficient one-pot hydroxyl-group protection twofold deprotection reaction prepared the ground for the cyclisation to the bicycle. A final deprotection of the orthogonal protecting groups and lactamisation led to the novel, sp3 -rich tricycle. The final compound is a substrate mimic of peptidyl-prolyl cis-trans isomerases featuring a locked trans-amide bond. Cheminformatic analysis of 179 virtual derivatives indicates favourable physicochemical properties and drug-like characteristics. As proof of concept we, show a low micromolar activity in a fluorescence polarisation assay towards the FK506-binding protein 12.
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Affiliation(s)
- Matthias Bischoff
- Compound Management and Screening Center (COMAS)Max Planck Institute of Molecular PhysiologyOtto-Hahn-Strasse 1144227DortmundGermany
| | - Peter Mayer
- Department of ChemistryLudwig-Maximilians-University MünchenButenandtstrasse 5–1381377MünchenGermany
| | - Christian Meyners
- Department of ChemistryInstitute of Chemistry and BiochemistryDarmstadt University of TechnologyAlarich-Weiss-Strasse 464287DarmstadtGermany
| | - Felix Hausch
- Department of ChemistryInstitute of Chemistry and BiochemistryDarmstadt University of TechnologyAlarich-Weiss-Strasse 464287DarmstadtGermany
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4
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Guéret SM, Thavam S, Carbajo RJ, Potowski M, Larsson N, Dahl G, Dellsén A, Grossmann TN, Plowright AT, Valeur E, Lemurell M, Waldmann H. Macrocyclic Modalities Combining Peptide Epitopes and Natural Product Fragments. J Am Chem Soc 2020; 142:4904-4915. [PMID: 32058716 PMCID: PMC7307906 DOI: 10.1021/jacs.0c00269] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
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“Hot
loop” protein segments have variable structure
and conformation and contribute crucially to protein–protein
interactions. We describe a new hot loop mimicking modality, termed
PepNats, in which natural product (NP)-inspired structures are incorporated
as conformation-determining and -restricting structural elements into
macrocyclic hot loop-derived peptides. Macrocyclic PepNats representing
hot loops of inducible nitric oxide synthase (iNOS) and human agouti-related
protein (AGRP) were synthesized on solid support employing macrocyclization
by imine formation and subsequent stereoselective 1,3-dipolar cycloaddition
as key steps. PepNats derived from the iNOS DINNN hot loop and the
AGRP RFF hot spot sequence yielded novel and potent ligands of the
SPRY domain-containing SOCS box protein 2 (SPSB2) that binds to iNOS,
and selective ligands for AGRP-binding melanocortin (MC) receptors.
NP-inspired fragment absolute configuration determines the conformation
of the peptide part responsible for binding. These results demonstrate
that combination of NP-inspired scaffolds with peptidic epitopes enables
identification of novel hot loop mimics with conformationally constrained
and biologically relevant structure.
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Affiliation(s)
- Stéphanie M Guéret
- Department of Chemical Biology, AstraZeneca-Max Planck Institute Satellite Unit, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany.,Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Sasikala Thavam
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany
| | - Rodrigo J Carbajo
- Chemistry, Oncology R&D, AstraZeneca, Cambridge CB2 0SL, United Kingdom
| | - Marco Potowski
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund University, 44227 Dortmund, Germany
| | - Niklas Larsson
- Discovery Biology, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Göran Dahl
- Structure, Biophysics & Fragment Based Lead Generation, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Anita Dellsén
- Mechanistic Biology & Profiling, Discovery Sciences, BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Tom N Grossmann
- Department of Chemistry and Pharmaceutical Sciences, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, The Netherlands
| | - Alleyn T Plowright
- Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Eric Valeur
- Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Malin Lemurell
- Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolism (CVRM), BioPharmaceuticals R&D, AstraZeneca, 431 50 Gothenburg, Sweden
| | - Herbert Waldmann
- Department of Chemical Biology, Max-Planck-Institute of Molecular Physiology, 44227 Dortmund, Germany.,Faculty of Chemistry and Chemical Biology, TU Dortmund University, 44227 Dortmund, Germany
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5
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Gao B, Chen S, Hou YN, Zhao YJ, Ye T, Xu Z. Solution-phase total synthesis of teixobactin. Org Biomol Chem 2019; 17:1141-1153. [PMID: 30638238 DOI: 10.1039/c8ob02803f] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
The first solution-phase total synthesis of the cyclic depsipeptide teixobactin is described. Stereoselective construction of l-allo-enduracididine was established, and the protective groups for the peptide coupling reactions and conditions for the assembly of the fragments were also optimised. The longest linear sequence for the total synthesis was 20 steps from the known l-cis-4-hydroxyproline derivative and gave a 5.6% overall yield. This solution-phase total synthesis could serve as a complement to the current solid-phase synthesis of teixobactin.
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Affiliation(s)
- Bowen Gao
- State Key Laboratory of Chemical Oncogenomics, Key Laboratory of Chemical Genomics, and Engineering Laboratory for Chiral Drug Synthesis, Peking University Shenzhen Graduate School, Xili, Nanshan District, Shenzhen 518055, China.
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6
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Piotrowska DG, Głowacka IE, Wróblewski AE, Lubowiecka L. Synthesis of nonracemic hydroxyglutamic acids. Beilstein J Org Chem 2019; 15:236-255. [PMID: 30745997 PMCID: PMC6350885 DOI: 10.3762/bjoc.15.22] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Accepted: 12/22/2018] [Indexed: 11/24/2022] Open
Abstract
Glutamic acid is involved in several cellular processes though its role as the neurotransmitter is best recognized. For detailed studies of interactions with receptors a number of structural analogues of glutamic acid are required to map their active sides. This review article summarizes syntheses of nonracemic hydroxyglutamic acid analogues equipped with functional groups capable for the formation of additional hydrogen bonds, both as donors and acceptors. The majority of synthetic strategies starts from natural products and relies on application of chirons having the required configuration at the carbon atom bonded to nitrogen (e.g., serine, glutamic and pyroglutamic acids, proline and 4-hydroxyproline). Since various hydroxyglutamic acids were identified as components of complex natural products, syntheses of orthogonally protected derivatives of hydroxyglutamic acids are also covered.
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Affiliation(s)
- Dorota G Piotrowska
- Bioorganic Chemistry Laboratory, Faculty of Pharmacy, Medical University of Lodz, Muszynskiego 1, 90-151 Lodz, Poland
| | - Iwona E Głowacka
- Bioorganic Chemistry Laboratory, Faculty of Pharmacy, Medical University of Lodz, Muszynskiego 1, 90-151 Lodz, Poland
| | - Andrzej E Wróblewski
- Bioorganic Chemistry Laboratory, Faculty of Pharmacy, Medical University of Lodz, Muszynskiego 1, 90-151 Lodz, Poland
| | - Liwia Lubowiecka
- Bioorganic Chemistry Laboratory, Faculty of Pharmacy, Medical University of Lodz, Muszynskiego 1, 90-151 Lodz, Poland
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7
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Abdel Monaim SAH, Somboro AM, El-Faham A, de la Torre BG, Albericio F. Bacteria Hunt Bacteria through an Intriguing Cyclic Peptide. ChemMedChem 2018; 14:24-51. [PMID: 30394699 DOI: 10.1002/cmdc.201800597] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Revised: 10/10/2018] [Indexed: 12/15/2022]
Abstract
In the last few decades, peptides have been victorious over small molecules as therapeutics due to their broad range of applications, high biological activity, and high specificity. However, the main challenges to overcome if peptides are to become effective drugs is their low oral bioavailability and instability under physiological conditions. Cyclic peptides play a vital role in this context because they show higher stability under physiological conditions, higher membrane permeability, and greater oral bioavailability than that of their corresponding linear analogues. In this regard, cyclic antimicrobial peptides (AMPs) have gained considerable attention in the field of novel antibiotic development. Bacterial strains produce cyclic AMPs through two pathways: ribosomal and nonribosomal. This review provides an overview of the chemical classification of cyclic AMPs isolated from bacteria, and provides a description of their biological activity and mode of action.
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Affiliation(s)
- Shimaa A H Abdel Monaim
- KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa.,Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban, 4001, South Africa
| | - Anou M Somboro
- Biomedical Resource Unit, School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa
| | - Ayman El-Faham
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.,Chemistry Department, Faculty of Science, Alexandria University, P.O. Box 426, Ibrahimia, Alexandria, 12321, Egypt
| | - Beatriz G de la Torre
- KwaZulu-Natal Research Innovation and Sequencing Platform (KRISP), School of Laboratory Medicine and Medical Sciences, College of Health Sciences, University of KwaZulu-Natal, Durban, 4041, South Africa
| | - Fernando Albericio
- Peptide Science Laboratory, School of Chemistry and Physics, University of KwaZulu-Natal, Durban, 4001, South Africa.,Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia.,CIBER-BBN, Networking Centre on Bioengineering, Biomaterials and Nanomedicine, and Department of Organic Chemistry, University of Barcelona, Barcelona, 08028, Spain
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8
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Guérard-Hélaine C, Heuson E, Ndiaye M, Gourbeyre L, Lemaire M, Hélaine V, Charmantray F, Petit JL, Salanoubat M, de Berardinis V, Gefflaut T. Stereoselective synthesis of γ-hydroxy-α-amino acids through aldolase-transaminase recycling cascades. Chem Commun (Camb) 2018; 53:5465-5468. [PMID: 28466909 DOI: 10.1039/c7cc00742f] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Efficient bi-enzymatic cascades combining aldolases and α-transaminases were designed for the synthesis of γ-hydroxy-α-amino acids. These recycling cascades provide high stereoselectivity, atom economy, and an equilibrium shift of the transamination. l-syn or anti-4-hydroxyglutamic acid and d-anti-4,5-dihydroxynorvaline were thus prepared in 83-95% yield in one step from simple substrates.
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Affiliation(s)
- Christine Guérard-Hélaine
- Université Clermont Auvergne, CNRS, SIGMA Clermont, Institut de Chimie de Clermont-Ferrand, F-63000 Clermont-Ferrand, France.
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9
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Craig W, Chen J, Richardson D, Thorpe R, Yuan Y. A Highly Stereoselective and Scalable Synthesis of l-allo-Enduracididine. Org Lett 2015; 17:4620-3. [DOI: 10.1021/acs.orglett.5b02362] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- William Craig
- Department of Chemistry, University of Central Florida, Orlando, Florida 32816, United States
| | - Janet Chen
- Department of Chemistry, University of Central Florida, Orlando, Florida 32816, United States
| | - David Richardson
- Department of Chemistry, University of Central Florida, Orlando, Florida 32816, United States
| | - Rondel Thorpe
- Department of Chemistry, University of Central Florida, Orlando, Florida 32816, United States
| | - Yu Yuan
- Department of Chemistry, University of Central Florida, Orlando, Florida 32816, United States
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10
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Bischoff M, Sippel C, Bracher A, Hausch F. Stereoselective construction of the 5-hydroxy diazabicyclo[4.3.1]decane-2-one scaffold, a privileged motif for FK506-binding proteins. Org Lett 2014; 16:5254-7. [PMID: 25286062 DOI: 10.1021/ol5023195] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
A stereoselective synthesis of a derivatized bicyclic [4.3.1]decane scaffold based on an acyclic precursor is described. The key steps involve a Pd-catalyzed sp(3)-sp(2) Negishi-coupling, an asymmetric Shi epoxidation, and an intramolecular epoxide opening. Representative derivatives of this novel scaffold were synthesized and found to be potent inhibitors of the psychiatric risk factor FKBP51, which bound to FKBP51 with the intended molecular binding mode.
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Affiliation(s)
- Matthias Bischoff
- Max Planck Institute of Psychiatry , Kraepelinstr. 2, 80804 München, Germany
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11
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Berwe M, Jöntgen W, Krüger J, Cancho-Grande Y, Lampe T, Michels M, Paulsen H, Raddatz S, Weigand S. Scalable Synthesis of the Desoxy-biphenomycin B Core. Org Process Res Dev 2011. [DOI: 10.1021/op200207h] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mathias Berwe
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Winfried Jöntgen
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Jochen Krüger
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Yolanda Cancho-Grande
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Thomas Lampe
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Martin Michels
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Holger Paulsen
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Siegfried Raddatz
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
| | - Stefan Weigand
- Bayer Pharma AG, ⊥Chemical Development, Process Research, and ‡Medicinal Chemistry, 42096 Wuppertal Germany
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