1
|
Walby GD, Gu Q, Yang H, Martin SF. Structure-Affinity relationships of novel σ 2R/TMEM97 ligands. Bioorg Chem 2024; 145:107191. [PMID: 38432153 DOI: 10.1016/j.bioorg.2024.107191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2023] [Revised: 01/24/2024] [Accepted: 02/06/2024] [Indexed: 03/05/2024]
Abstract
The sigma 2 receptor (σ2R), which was recently identified as the transmembrane protein 97 (TMEM97), is increasingly attracting interest as a possible therapeutic target for indications in neuroscience. Toward identifying novel modulators of σ2R/TMEM97, we prepared a collection of benzoxazocine, benzomorphan, and methanobenzazepine ligands related to the known bioactive norbenzomorphans DKR-1677, FEM-1689, and EES-1686 and determined their Ki values for σ2R/TMEM97 and the sigma 1 receptor (σ1R). The σ2R/TMEM97 binding affinities and selectivities relative to σ1R of these new benzoxazocine, benzomorphan, and methanobenzazepine analogs are lower, often significantly lower, than their respective norbenzomorphan counterparts, suggesting the spatial orientation of pharmacophoric substituents is critical for binding to the two proteins. The benzoxazocine, benzomorphan, and methanobenzazepine congeners of DKR-1677 and FEM-1689 tend to be weakly selective for σ2R/TMEM97 versus σ1R, whereas EES-1686 derivatives exhibit the greatest selectivity, suggesting the size and/or nature of the substituent on the nitrogen atom of the scaffold may be important for selectivity. Computational docking studies were performed for the 1S,5R-and 1R,5S-enantiomers of DKR-1677, FEM-1689, and EES-1686 and their benzoxazocine, benzomorphan, and methanobenzazepine counterparts. These computations predict that the protonated amino group of each ligand forms a highly conserved salt bridge and a H-bonding interaction with Asp29 as well as a cation-π interaction with Tyr150 of σ2R/TMEM97. These electrostatic interactions are major driving forces for binding to σ2R/TMEM97 and are similar, though not identical, for each ligand. Other interactions within the well-defined binding pocket also tend to be comparable, but there are some major differences in how the hydrophobic aryl groups of various ligands interact with the protein surface external to the binding pocket. Overall, these studies show that the orientations of aryl and N-substituents on the norbenzomorphan and related scaffolds are important determinants of binding affinity of σ2R/TMEM97 ligands, and small changes can have significant effects upon binding profiles.
Collapse
Affiliation(s)
- Grant D Walby
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States
| | - Qi Gu
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States
| | - Hongfen Yang
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States
| | - Stephen F Martin
- Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, United States.
| |
Collapse
|
2
|
Photochemical assisted novel formation of δ-lactone utilizing trimethylsilylacetylene, isopropanol and ironpentacarbonyl. J Organomet Chem 2022. [DOI: 10.1016/j.jorganchem.2022.122437] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
|
3
|
Zheng Y, Dong S, Xu K, Liu D, Zhang W. Pd-Catalyzed Asymmetric Allylic Substitution Cascade of Substituted 4-Hydroxy-2 H-pyrones with meso-Allyl Dicarbonates. Org Lett 2022; 24:3440-3444. [PMID: 35544680 DOI: 10.1021/acs.orglett.2c00937] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
An efficient Pd-catalyzed asymmetric allylic substitution cascade of 4-hydroxy-2H-pyrones with meso-allyl dicarbonates has been developed for the synthesis of kinetic chiral tetrahydro-1H-pyrano[4,3-b]benzofuran-1-one products in ≤87% yield and ≤99% ee. The protocol was achieved via a temperature-controlled kinetic control process, which has been illustrated by means of the experimental results and control experiments. The reaction could be conducted on a gram scale, and the resulting product allows for several transformations.
Collapse
Affiliation(s)
- Yan Zheng
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Pharmacy, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China
| | - Siqi Dong
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Pharmacy, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China
| | - Kai Xu
- Frontiers Science Center for Transformative Molecules, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China
| | - Delong Liu
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Pharmacy, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China
| | - Wanbin Zhang
- Shanghai Key Laboratory for Molecular Engineering of Chiral Drugs, School of Pharmacy, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China.,Frontiers Science Center for Transformative Molecules, School of Chemistry and Chemical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240, P. R. China
| |
Collapse
|
4
|
González-López V, Resendiz-Lara DA, Rosas-Sánchez A, Ledesma-Olvera LG, Daran JC, Barquera-Lozada JE, López-Cortés JG, Ortega-Alfaro MC. Iodine-promoted insertion of the oxygen atom from water in η 4-vinylketene[Fe(CO) 3] complexes. Dalton Trans 2022; 51:6868-6875. [PMID: 35439809 DOI: 10.1039/d2dt00674j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Iodine promotes the in situ formation of iron(II) species from η4-vinylketene[Fe(CO)3] (3a-h) as a key intermediate for the synthesis of 2(5H)-furanones (4a-h) by a sequential water-insertion/carbon-oxygen coupling under mild reaction conditions. Compounds 4a-h were obtained in good to excellent yields. A possible reaction pathway was also proposed by DFT calculations. This methodology can be extended to the synthesis of (5H)-pyrrol-2-ones using anilines, with moderate yields and a few limitations.
Collapse
Affiliation(s)
- Vianney González-López
- Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Coyoacán, C.P. 04510, Cd. México, Mexico.
| | - Diego A Resendiz-Lara
- Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Coyoacán, C.P. 04510, Cd. México, Mexico.
| | - Alfredo Rosas-Sánchez
- Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Coyoacán, C.P. 04510, Cd. México, Mexico.
| | - Lydia G Ledesma-Olvera
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Coyoacán, C.P. 04510, Cd. México, Mexico
| | - Jean-Claude Daran
- LCC (Laboratoire de Chimie de Coordination), 205, route de Narbonne, 31077 Toulouse, France
| | - José E Barquera-Lozada
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Coyoacán, C.P. 04510, Cd. México, Mexico
| | - José G López-Cortés
- Instituto de Química, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Coyoacán, C.P. 04510, Cd. México, Mexico
| | - M Carmen Ortega-Alfaro
- Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, Coyoacán, C.P. 04510, Cd. México, Mexico.
| |
Collapse
|
5
|
Gabriel P, Almehmadi YA, Wong ZR, Dixon DJ. A General Iridium-Catalyzed Reductive Dienamine Synthesis Allows a Five-Step Synthesis of Catharanthine via the Elusive Dehydrosecodine. J Am Chem Soc 2021; 143:10828-10835. [PMID: 34254792 PMCID: PMC8397322 DOI: 10.1021/jacs.1c04980] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2021] [Indexed: 02/08/2023]
Abstract
A new reductive strategy for the stereo- and regioselective synthesis of functionalized isoquinuclidines has been developed. Pivoting on the chemoselective iridium(I)-catalyzed reductive activation of β,γ-unsaturated δ-lactams, the efficiently produced reactive dienamine intermediates readily undergo [4 + 2] cycloaddition reactions with a wide range of dienophiles, resulting in the formation of bridged bicyclic amine products. This new synthetic approach was extended to aliphatic starting materials, resulting in the efficient formation of cyclohexenamine products, and readily applied as the key step in the shortest (five-step) total synthesis of vinca alkaloid catharanthine to date, proceeding via its elusive biosynthetic precursor, dehydrosecodine.
Collapse
Affiliation(s)
- Pablo Gabriel
- Department
of Chemistry, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Yaseen A. Almehmadi
- Department
of Chemistry, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
- Department
of Chemistry, Rabigh College of Science and Arts, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - Zeng Rong Wong
- Department
of Chemistry, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Darren J. Dixon
- Department
of Chemistry, Chemistry Research Laboratory, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
| |
Collapse
|
6
|
Tao S, Xiao J, Li Y, Sun F, Du Y. PhICl
2
/
NH
4
SCN‐Mediated
Oxidative Regioselective Thiocyanation of Pyridin‐2(
1
H
)‐ones. CHINESE J CHEM 2021. [DOI: 10.1002/cjoc.202100278] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Shanqing Tao
- Tianjin Key Laboratory for Modern Drug Delivery & High‐Efficiency, School of Pharmaceutical Science and Technology Tianjin University Tianjin 300072 China
| | - Jiaxi Xiao
- Tianjin Key Laboratory for Modern Drug Delivery & High‐Efficiency, School of Pharmaceutical Science and Technology Tianjin University Tianjin 300072 China
| | - Yadong Li
- Tianjin Key Laboratory for Modern Drug Delivery & High‐Efficiency, School of Pharmaceutical Science and Technology Tianjin University Tianjin 300072 China
| | - Fengxia Sun
- College of Chemical and Pharmaceutical Engineering Hebei University of Science and Technology; Hebei Research Center of Pharmaceutical and Chemical Engineering Shijiazhuang Hebei 050018 China
| | - Yunfei Du
- Tianjin Key Laboratory for Modern Drug Delivery & High‐Efficiency, School of Pharmaceutical Science and Technology Tianjin University Tianjin 300072 China
| |
Collapse
|
7
|
Wan S, Luo Z, Xu X, Yu H, Li J, Pan Y, Zhang X, Xu L, Cao R. Manganese(I)‐Catalyzed Site‐Selective C6‐Alkenylation of 2‐Pyridones Using Alkynes via C−H Activation. Adv Synth Catal 2021. [DOI: 10.1002/adsc.202100056] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Shanhong Wan
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Zhenli Luo
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Xin Xu
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Haiyang Yu
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Jiajie Li
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Yixiao Pan
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Xin Zhang
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Lijin Xu
- Department of Chemistry Renmin University of China Beijing 100872 People's Republic of China
| | - Rui Cao
- School of Chemistry and Chemical Engineering Shaanxi Normal University Xi'an 710062 People's Republic of China
| |
Collapse
|
8
|
Fürstner A. Iron Catalyzed C–C-Bond Formation: From Canonical Cross Coupling to a Quest for New Reactivity. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2021. [DOI: 10.1246/bcsj.20200319] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- Alois Fürstner
- Max-Planck-Institut für Kohlenforschung, 45470 Mülheim/Ruhr, Germany
| |
Collapse
|
9
|
Han F, Wang T, Feng B, Xu Q. N,N-Dimethylformamide (DMF)-Promoted SpecificN-Alkylation of Hydroxyl N-Heterocycles with Organohalides: A Direct and Efficient Method for Synthesis of Pyridone Derivatives. CHINESE J ORG CHEM 2021. [DOI: 10.6023/cjoc202102026] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
|
10
|
Huang L, Gu Y, Fürstner A. Iron-Catalyzed Reactions of 2-Pyridone Derivatives: 1,6-Addition and Formal Ring Opening/Cross Coupling. Chem Asian J 2019; 14:4017-4023. [PMID: 31274217 PMCID: PMC7687238 DOI: 10.1002/asia.201900865] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Indexed: 11/15/2022]
Abstract
In the presence of simple iron salts, 2‐pyridone derivatives react with Grignard reagents under mild conditions to give the corresponding 1,6‐addition products; if the reaction medium is supplemented with an aprotic dipolar cosolvent after the actual addition step, the intermediates primarily formed succumb to ring opening, giving rise to non‐thermodynamic Z,E‐configured dienoic acid amide derivatives which are difficult to make otherwise. Control experiments as well as the isolation and crystallographic characterization of a (tricarbonyl)iron pyridone complex suggest that the active iron catalyst generated in situ exhibits high affinity to the polarized diene system embedded into the heterocyclic ring system of the substrates, which likely serves as the actual recognition element.
Collapse
Affiliation(s)
- Lin Huang
- Max-Planck-Institut für Kohlenforschung, 45470, Mülheim/Ruhr, Germany
| | - Yiting Gu
- Max-Planck-Institut für Kohlenforschung, 45470, Mülheim/Ruhr, Germany
| | - Alois Fürstner
- Max-Planck-Institut für Kohlenforschung, 45470, Mülheim/Ruhr, Germany
| |
Collapse
|