1
|
Halle L, Hollmann N, Tenhaef N, Mbengi L, Glitz C, Wiechert W, Polen T, Baumgart M, Bott M, Noack S. Robotic workflows for automated long-term adaptive laboratory evolution: improving ethanol utilization by Corynebacterium glutamicum. Microb Cell Fact 2023; 22:175. [PMID: 37679814 PMCID: PMC10483779 DOI: 10.1186/s12934-023-02180-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/30/2023] [Accepted: 08/15/2023] [Indexed: 09/09/2023] Open
Abstract
BACKGROUND Adaptive laboratory evolution (ALE) is known as a powerful tool for untargeted engineering of microbial strains and genomics research. It is particularly well suited for the adaptation of microorganisms to new environmental conditions, such as alternative substrate sources. Since the probability of generating beneficial mutations increases with the frequency of DNA replication, ALE experiments are ideally free of constraints on the required duration of cell proliferation. RESULTS Here, we present an extended robotic workflow for performing long-term evolution experiments based on fully automated repetitive batch cultures (rbALE) in a well-controlled microbioreactor environment. Using a microtiter plate recycling approach, the number of batches and thus cell generations is technically unlimited. By applying the validated workflow in three parallel rbALE runs, ethanol utilization by Corynebacterium glutamicum ATCC 13032 (WT) was significantly improved. The evolved mutant strain WT_EtOH-Evo showed a specific ethanol uptake rate of 8.45 ± 0.12 mmolEtOH gCDW-1 h-1 and a growth rate of 0.15 ± 0.01 h-1 in lab-scale bioreactors. Genome sequencing of this strain revealed a striking single nucleotide variation (SNV) upstream of the ald gene (NCgl2698, cg3096) encoding acetaldehyde dehydrogenase (ALDH). The mutated basepair was previously predicted to be part of the binding site for the global transcriptional regulator GlxR, and re-engineering demonstrated that the identified SNV is key for enhanced ethanol assimilation. Decreased binding of GlxR leads to increased synthesis of the rate-limiting enzyme ALDH, which was confirmed by proteomics measurements. CONCLUSIONS The established rbALE technology is generally applicable to any microbial strain and selection pressure that fits the small-scale cultivation format. In addition, our specific results will enable improved production processes with C. glutamicum from ethanol, which is of particular interest for acetyl-CoA-derived products.
Collapse
Affiliation(s)
- Lars Halle
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52425, Jülich, Germany
| | - Niels Hollmann
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
| | - Niklas Tenhaef
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
| | - Lea Mbengi
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
| | - Christiane Glitz
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
| | - Wolfgang Wiechert
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52425, Jülich, Germany
| | - Tino Polen
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52425, Jülich, Germany
| | - Meike Baumgart
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
| | - Michael Bott
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52425, Jülich, Germany
| | - Stephan Noack
- Institute of Bio- and Geosciences, Forschungszentrum Jülich GmbH, IBG-1: Biotechnology, 52425, Jülich, Germany.
- Bioeconomy Science Center (BioSC), Forschungszentrum Jülich GmbH, 52425, Jülich, Germany.
| |
Collapse
|
2
|
Hou M, Shi Y, Li J, Gao Z, Zhang Z. Cu-based Organic-Inorganic Composite Materials for Electrochemical CO2 Reduction. Chem Asian J 2022; 17:e202200624. [PMID: 35859530 DOI: 10.1002/asia.202200624] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 07/14/2022] [Accepted: 06/14/2022] [Indexed: 11/08/2022]
Abstract
Electrochemical CO2 reduction reaction (CO2RR) is an attractive pathway to convert CO2 into value-added chemicals and fuels. Copper (Cu) is the most effective monometallic catalyst for converting CO2 into multi-carbon products, but suffers from high overpotentials and poor selectivity. Therefore, it is essential to design efficient Cu-based catalyst to improve the selectivity of specific products. Due to the combination of advantages of organic and inorganic composite materials, organic-inorganic composites exhibit high catalytic performance towards CO2RR, and have been extensively studied. In this review, the research advances of various Cu-based organic-inorganic composite materials in CO2RR, i.e., organic molecular modified-metal Cu composites, Cu-based molecular catalyst/carbon carrier composites, Cu-based metal organic framework (MOF) composites, and Cu-based covalent organic framework (COF) composites are systematically summarized. Particularly, the synthesis strategies of Cu-based composites, structure-performance relationship, and catalytic mechanisms are discussed. Finally, the opportunities and challenges of Cu-based organic-inorganic composite materials in CO2RR are proposed.
Collapse
Affiliation(s)
- Man Hou
- Tianjin University, Department of Chemistry, School of Science, CHINA
| | - YongXia Shi
- Tianjin University, Department of Chemistry, School of Science, CHINA
| | - JunJun Li
- Tianjin University, Department of Chemistry, School of Science, CHINA
| | - ZengQiang Gao
- Tianjin University, Department of Chemistry, School of Science, CHINA
| | - Zhicheng Zhang
- Tianjin University, Department of Chemistry, 92, Weijin Road, Nankai District, Tianjin, 300072, Tianjin, CHINA
| |
Collapse
|
3
|
Dongare S, Singh N, Bhunia H, Bajpai PK, Das AK. Electrochemical Reduction of Carbon Dioxide to Ethanol: A Review. ChemistrySelect 2021. [DOI: 10.1002/slct.202102829] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Saudagar Dongare
- Department of Chemical Engineering Thapar Institute of Engineering and Technology (Deemed to be University) Patiala 147004 Punjab India
| | - Neetu Singh
- Department of Chemical Engineering Thapar Institute of Engineering and Technology (Deemed to be University) Patiala 147004 Punjab India
| | - Haripada Bhunia
- Department of Chemical Engineering Thapar Institute of Engineering and Technology (Deemed to be University) Patiala 147004 Punjab India
| | - Pramod K. Bajpai
- Ex-Distinguished Professor Department of Chemical Engineering Thapar Institute of Engineering and Technology (Deemed to be University) Patiala 147004 Punjab India
- Present address: G-1 Ekta Apartment 120/912 Ranjeet Nagar Kanpur 208005 Uttar Pradesh India
| | - Asit Kumar Das
- Head, Refinery R&D and Process Development, Reliance Industries Limited Jamnagar 361142 Gujarat India
| |
Collapse
|