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Sun L, Hase WL. Comparisons of classical and Wigner sampling of transition state energy levels for quasiclassical trajectory chemical dynamics simulations. J Chem Phys 2010; 133:044313. [DOI: 10.1063/1.3463717] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Lourderaj U, Park K, Hase WL. Classical trajectory simulations of post-transition state dynamics. INT REV PHYS CHEM 2008. [DOI: 10.1080/01442350802045446] [Citation(s) in RCA: 103] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Vayner G, Addepalli SV, Song K, Hase WL. Post-transition state dynamics for propene ozonolysis: Intramolecular and unimolecular dynamics of molozonide. J Chem Phys 2006; 125:014317. [PMID: 16863308 DOI: 10.1063/1.2206785] [Citation(s) in RCA: 56] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022] Open
Abstract
A direct chemical dynamics simulation, at the B3LYP6-31G(d) level of theory, was used to study the post-transition state intramolecular and unimolecular dynamics for the O3 + propene reaction. Comparisons of B3LYP6-31G(d) with CCSD(T)/cc-pVTZ and other levels of theory show that the former gives accurate structures and energies for the reaction's stationary points. The direct dynamics simulations are initiated at the anti and syn O3 + propene transition states (TSs) and the TS symmetries are preserved in forming the molozonide intermediates. Anti<-->syn molozonide isomerization has a very low barrier of 2-3 kcalmol and its Rice-Ramsperger-Kassel-Marcus (RRKM) lifetime is 0.3 ps. However, the trajectory isomerization is slower and it is unclear whether this anti<-->syn equilibration is complete when the trajectories are terminated at 1.6 ps. The syn (anti) molozonides dissociate to CH3CHO + H2COO and H2CO + syn (anti) CH3CHOO. The kinetics for the latter reactions are in overall good agreement with RRKM theory, but there is a symmetry preserving non-RRKM dynamical constraint for the former. Dissociation of anti molozonide to CH3CHO + H2COO is enhanced and suppressed, respectively, for the trajectory ensembles initiated at the anti and syn O3 + propene TSs. The dissociation of syn molozonide to CH3CHO + H2COO may also be enhanced for trajectories initiated at the syn O3 + propene TS. At the time the trajectories are terminated at 1.6 ps, the ratio of the trajectory and RRKM values of the CH3CHO + H2COO product yield is 1.6 if the symmetries of the initiation and dissociation TSs are the same and 0.6 if their symmetries are different. There are coherences in the intramolecular energy flow, which depend on molozonide's symmetry (i.e., anti or syn). This symmetry related dynamics is not completely understood, but it is clearly related to the non-RRKM dynamics for anti<-->syn isomerization and anti molozonide dissociation to CH3CHO + H2COO. Correlations are found between the stretching motions of molozonide, indicative of nonchaotic and non-RRKM dynamics. The non-RRKM dynamics of molozonide dissociation partitions vibration energy to H2COO that is larger than statistical partitioning. Though the direct dynamics simulations are classical, better agreement is obtained using quantum instead of classical harmonic RRKM theory. This may result from the neglect of anharmonicity in the RRKM calculations, the non-RRKM dynamics of the classical trajectories, or a combination of these two effects. The trajectories suggest that the equilibrium syn/anti molozonide ratio is approximately 1.1-1.2 times larger than that predicted by the harmonic densities of state, indicating an anharmonic correction.
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Affiliation(s)
- Grigoriy Vayner
- Department of Chemistry and Biochemistry, Texas Tech University, Lubbock, Texas 79409-1061, USA
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Doubleday C. Mechanism of the Vinylcyclopropane−Cyclopentene Rearrangement Studied by Quasiclassical Direct Dynamics. J Phys Chem A 2001. [DOI: 10.1021/jp010464z] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Charles Doubleday
- Department of Chemistry, Columbia University, New York, New York 10027
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Martínez-Núñez E, Vázquez SA. Anharmonic Quasiclassical Barrier Samplings in Trajectory Calculations and Their Influence on the Computed Product Energy Distributions. J Phys Chem A 2001. [DOI: 10.1021/jp004267w] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Emilio Martínez-Núñez
- Departamento de Química Física, Universidad de Santiago de Compostela, Santiago de Compostela E-15706, Spain
| | - Saulo A. Vázquez
- Departamento de Química Física, Universidad de Santiago de Compostela, Santiago de Compostela E-15706, Spain
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Svanberg M, Pettersson JBC, Bolton K. Coupled QM/MM Molecular Dynamics Simulations of HCl Interacting with Ice Surfaces and Water Clusters − Evidence of Rapid Ionization. J Phys Chem A 2000. [DOI: 10.1021/jp0012698] [Citation(s) in RCA: 96] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marcus Svanberg
- Department of Chemistry, Physical Chemistry, Göteborg University, SE-412 96 Göteborg, Sweden, School of Engineering, University of Borås, SE-501 90 Borås, Sweden, and School of Environmental Sciences, Göteborg University, SE-412 96 Göteborg, Sweden
| | - Jan B. C. Pettersson
- Department of Chemistry, Physical Chemistry, Göteborg University, SE-412 96 Göteborg, Sweden, School of Engineering, University of Borås, SE-501 90 Borås, Sweden, and School of Environmental Sciences, Göteborg University, SE-412 96 Göteborg, Sweden
| | - Kim Bolton
- Department of Chemistry, Physical Chemistry, Göteborg University, SE-412 96 Göteborg, Sweden, School of Engineering, University of Borås, SE-501 90 Borås, Sweden, and School of Environmental Sciences, Göteborg University, SE-412 96 Göteborg, Sweden
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Doubleday C, Nendel M, Houk KN, Thweatt D, Page M. Direct Dynamics Quasiclassical Trajectory Study of the Stereochemistry of the Vinylcyclopropane−Cyclopentene Rearrangement. J Am Chem Soc 1999. [DOI: 10.1021/ja984083j] [Citation(s) in RCA: 83] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Charles Doubleday
- Department of Chemistry, Columbia University New York, New York 10027 Department of Chemistry and Biochemistry University of California Los Angeles, California 90095-1569 Department of Chemistry, North Dakota State University Fargo, North Dakota 58105
| | - Maja Nendel
- Department of Chemistry, Columbia University New York, New York 10027 Department of Chemistry and Biochemistry University of California Los Angeles, California 90095-1569 Department of Chemistry, North Dakota State University Fargo, North Dakota 58105
| | - K. N. Houk
- Department of Chemistry, Columbia University New York, New York 10027 Department of Chemistry and Biochemistry University of California Los Angeles, California 90095-1569 Department of Chemistry, North Dakota State University Fargo, North Dakota 58105
| | - David Thweatt
- Department of Chemistry, Columbia University New York, New York 10027 Department of Chemistry and Biochemistry University of California Los Angeles, California 90095-1569 Department of Chemistry, North Dakota State University Fargo, North Dakota 58105
| | - Michael Page
- Department of Chemistry, Columbia University New York, New York 10027 Department of Chemistry and Biochemistry University of California Los Angeles, California 90095-1569 Department of Chemistry, North Dakota State University Fargo, North Dakota 58105
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Bolton K, Hase WL, Doubleday C. A QM/MM Direct Dynamics Trajectory Investigation of Trimethylene Decomposition in an Argon Bath. J Phys Chem B 1999. [DOI: 10.1021/jp982988d] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kim Bolton
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202
| | - William L. Hase
- Department of Chemistry, Wayne State University, Detroit, Michigan 48202
| | - Charles Doubleday
- Department of Chemistry, Columbia University, New York, New York 10027
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Freedman TB, Hausch DL, Cianciosi SJ, Baldwin JE. Kinetics of thermal racemization of (2S,3S)-1-13C-1,2,3-d3-cyclopropane followed by vibrational circular dichroism spectroscopy. CAN J CHEM 1998. [DOI: 10.1139/v98-070] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
Vibrational circular dichoism spectra recorded for (2S,3S)-1-13C-1,2,3-d3-cyclopropane and for mixtures of it and the three related stereoisomers prepared through gas-phase thermal stereomutation reactions at 407°C lead to the rate constant for racemization: kα = (4k1 + 4k12) = (3.12 ± 0.04) x 10-5 s-1. This and the rate constant measured for geometrical equilibration between the two chiral and the two achiral stereoisomers of 1-13C-1,2,3-d3-cyclopropane, ki = (8k1 + 4k12) = (4.63 ± 0.20) x 10-5 s-1, give two equations in two unknowns, and allow one to solve for one-center (k1) and two-center (k12) epimerization rate constants for cyclopropane stereomutations. They are nearly equal, a clear indication of closely competitive reaction pathways.Key words: cyclopropane stereomutations, thermal epimerizations, chirality through deuterium and carbon-13 labeling, vibrational circular dichroism.
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Doubleday C, Bolton K, Hase WL. Direct Dynamics Quasiclassical Trajectory Study of the Thermal Stereomutations of Cyclopropane. J Phys Chem A 1998. [DOI: 10.1021/jp973273y] [Citation(s) in RCA: 71] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Charles Doubleday
- Department of Chemistry, Columbia University, New York, New York 10027
| | - Kim Bolton
- Department of Chemisty, Wayne State University, Detroit, Michigan 48202
| | - William L. Hase
- Department of Chemisty, Wayne State University, Detroit, Michigan 48202
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