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Fuchs LIR, Knobloch J, Wiesenthal AA, Fuss J, Franzenburg S, Torres Oliva M, Müller C, Wheat CW, Hildebrandt JP. A draft genome of the neritid snail Theodoxus fluviatilis. G3 (BETHESDA, MD.) 2024; 14:jkad282. [PMID: 38069680 PMCID: PMC10917513 DOI: 10.1093/g3journal/jkad282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 12/01/2023] [Indexed: 03/08/2024]
Abstract
The neritid snail Theodoxus fluviatilis is found across habitats differing in salinity, from shallow waters along the coast of the Baltic Sea to lakes throughout Europe. Living close to the water surface makes this species vulnerable to changes in salinity in their natural habitat, and the lack of a free-swimming larval stage limits this species' dispersal. Together, these factors have resulted in a patchy distribution of quite isolated populations differing in their salinity tolerances. In preparation for investigating the mechanisms underlying the physiological differences in osmoregulation between populations that cannot be explained solely by phenotypic plasticity, we present here an annotated draft genome assembly for T. fluviatilis, generated using PacBio long reads, Illumina short reads, and transcriptomic data. While the total assembly size (1045 kb) is similar to those of related species, it remains highly fragmented (N scaffolds = 35,695; N50 = 74 kb) though moderately high in complete gene content (BUSCO single copy complete: 74.3%, duplicate: 2.6%, fragmented: 10.6%, missing: 12.5% using metazoa n = 954). Nevertheless, we were able to generate gene annotations of 21,220 protein-coding genes (BUSCO single copy complete: 65.1%, duplicate: 16.7%, fragmented: 9.1%, missing: 9.1% using metazoa n = 954). Not only will this genome facilitate comparative evolutionary studies across Gastropoda, as this is the first genome assembly for the basal snail family Neritidae, it will also greatly facilitate the study of salinity tolerance in this species. Additionally, we discuss the challenges of working with a species where high molecular weight DNA isolation is very difficult.
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Affiliation(s)
- Laura Iris Regina Fuchs
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany
| | - Jan Knobloch
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany
| | - Amanda Alice Wiesenthal
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany
- Marine Biology, University of Rostock, Albert-Einstein-Straße 3, D - 18059 Rostock, Germany
| | - Janina Fuss
- Institute of Clinical Molecular Biology, Kiel University (CAU), University Hospital Schleswig Holstein, Rosalind-Franklin-Strasse 12, D - 24105 Kiel, Germany
| | - Soeren Franzenburg
- Institute of Clinical Molecular Biology, Kiel University (CAU), University Hospital Schleswig Holstein, Rosalind-Franklin-Strasse 12, D - 24105 Kiel, Germany
| | - Montserrat Torres Oliva
- Institute of Clinical Molecular Biology, Kiel University (CAU), University Hospital Schleswig Holstein, Rosalind-Franklin-Strasse 12, D - 24105 Kiel, Germany
| | - Christian Müller
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany
| | - Christopher W Wheat
- Department of Zoology, Stockholm University, Svante Arrheniusväg 18 B, S-10691 Stockholm, Sweden
| | - Jan-Peter Hildebrandt
- Animal Physiology and Biochemistry, Zoological Institute and Museum, University of Greifswald, Felix Hausdorff-Strasse 1, D - 17489 Greifswald, Germany
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Collins M, Truebano M, Spicer JI. Consequences of thermal plasticity for hypoxic performance in coastal amphipods. MARINE ENVIRONMENTAL RESEARCH 2022; 177:105624. [PMID: 35436652 DOI: 10.1016/j.marenvres.2022.105624] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2021] [Revised: 04/07/2022] [Accepted: 04/09/2022] [Indexed: 05/20/2023]
Abstract
Physiological plasticity may confer an ability to deal with the effect of rapid climate change on aquatic ectotherms. However, plasticity induced by one stressor may only be adaptive in situ if it generates cross-tolerance to other stressors. Understanding the consequences of thermal acclimation on hypoxia thresholds is vital to understanding future climate-driven hypoxia. We tested if thermal acclimation benefits hypoxic performance in four closely-related amphipod species. The effects of thermal acclimation (7 days at 10 or 20 °C) on routine metabolic rate (RMR) and critical oxygen tensions (Pcrit) were determined at a standardised test temperature (20 °C). Gammarus chevreuxi and Echinogammarus marinus displayed increased Pcrit with acute warming but warm acclimation negated this increase. Pcrit of Gammarus duebeni was thermally insensitive. Gammarus zaddachi displayed increased Pcrit upon acute warming but little change via acclimation. Cross-tolerance between thermal plasticity and hypoxia may improve performance for some, but not all, species under future environmental change.
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Affiliation(s)
- Michael Collins
- Marine Biology and Ecology Research Centre, School of Biological and Marine Sciences, University of Plymouth, Plymouth, PL4 8AA, UK.
| | - Manuela Truebano
- Marine Biology and Ecology Research Centre, School of Biological and Marine Sciences, University of Plymouth, Plymouth, PL4 8AA, UK
| | - John I Spicer
- Marine Biology and Ecology Research Centre, School of Biological and Marine Sciences, University of Plymouth, Plymouth, PL4 8AA, UK
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Fair H, Lanno R, Smiley PC. Tolerance of glacial-melt stoneflies (Plecoptera) and morphological responses of chloride cells to stream salinity. CHEMOSPHERE 2022; 293:133655. [PMID: 35051519 DOI: 10.1016/j.chemosphere.2022.133655] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2021] [Revised: 01/13/2022] [Accepted: 01/14/2022] [Indexed: 06/14/2023]
Abstract
Aquatic insects within glacial-melt streams are adapted to low dissolved inorganic ion concentrations. Increases in ion concentrations in glacial-melt streams are predicted with increasing air temperatures, which may impact future aquatic insect survival in these streams. We hypothesized that stonefly (Plecoptera) naiads from glacial-melt streams acclimated to different conductivity would differ in survival, median lethal concentrations, and chloride cell responses to elevated conductivity above that expected in our study streams. We conducted field bioassays in remote glacial-melt streams in southwestern China in 2015 and exposed representative stonefly naiads (Chloroperlidae, Nemouridae, Taeniopterygidae) from stream sites differing in conductivity to experimental conductivity ranging from 11 to 20,486 μS/cm for up to 216 h. We examined survivorship, calculated 96-h median lethal concentrations, and measured chloride cell responses with scanning electron microscopy. Chloroperlidae survival after 120 and 216 h did not differ (P > 0.05) among conductivity treatments. The combined Nemouridae/Taeniopterygidae survival after 120 and 216 h was the least (P < 0.05) in conductivity treatments >16,349 μS/cm. Taeniopterygidae survival after 120 h was also the least (P < 0.05) in conductivity treatments >16,349 μS/cm. The 96-h median lethal concentrations did not differ (P > 0.05) between the combined Nemouridae/Taeniopterygidae group (2306 μS/cm) and Taeniopterigydae (2002 μS/cm) and were lower (P < 0.05) than the 96-h median lethal concentration for Chloroperlidae (8167 μS/cm). Chloroperlidae caviform cell number, density, and area decreased (P < 0.05) with increasing conductivity. Taeniopterygidae caviform cell count decreased (P < 0.05) with increasing conductivity, but cell density and area did not. Chloroperlidae and Taeniopterygidae coniform cell characteristics and Nemouridae bulbiform cell characteristics were not affected by conductivity. Our results suggest that Chloroperlidae, Nemouridae, and Taeniopterygidae from glacial-melt streams in China may be able to tolerate moderate increases in conductivity (i.e., 100 to 200 μS/cm).
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Affiliation(s)
- Heather Fair
- Environmental Science Graduate Program, Ohio State University, Columbus, OH, USA.
| | - Roman Lanno
- Environmental Science Graduate Program, Ohio State University, Columbus, OH, USA; Department of Evolution, Ecology, and Organismal Biology, Ohio State University, Columbus, OH, USA
| | - Peter C Smiley
- USDA Agricultural Research Service, Soil Drainage Research Unit, Columbus, OH, USA
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Coggins BL, Anderson CE, Hasan R, Pearson AC, Ekwudo MN, Bidwell JR, Yampolsky LY. Breaking free from thermodynamic constraints: thermal acclimation and metabolic compensation in a freshwater zooplankton species. J Exp Biol 2021; 224:jeb237727. [PMID: 33328286 DOI: 10.1242/jeb.237727] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2020] [Accepted: 12/09/2020] [Indexed: 01/14/2023]
Abstract
Respiration rates of ectothermic organisms are affected by environmental temperatures, and sustainable metabolism at high temperatures sometimes limits heat tolerance. Organisms are hypothesized to exhibit acclimatory metabolic compensation effects, decelerating their metabolic processes below Arrhenius expectations based on temperature alone. We tested the hypothesis that either heritable or plastic heat tolerance differences can be explained by metabolic compensation in the eurythermal freshwater zooplankton crustacean Daphnia magna We measured respiration rates in a ramp-up experiment over a range of assay temperatures (5-37°C) in eight genotypes of D. magna representing a range of previously reported acute heat tolerances and, at a narrower range of temperatures (10-35°C), in D. magna with different acclimation history (either 10 or 25°C). We discovered no difference in temperature-specific respiration rates between heat-tolerant and heat-sensitive genotypes. In contrast, we observed acclimation-specific compensatory differences in respiration rates at both extremes of the temperature range studied. Notably, there was a deceleration of oxygen consumption at higher temperature in 25°C-acclimated D. magna relative to their 10°C-acclimated counterparts, observed in active animals, a pattern corroborated by similar changes in filtering rate and, partly, by changes in mitochondrial membrane potential. A recovery experiment indicated that the reduction of respiration was not caused by irreversible damage during exposure to a sublethal temperature. Response time necessary to acquire the respiratory adjustment to high temperature was lower than for low temperature, indicating that metabolic compensation at lower temperatures requires slower, possibly structural changes.
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Affiliation(s)
- B L Coggins
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN 37691, USA
- Department of Biological Sciences, University of Notre Dame, Galvin Life Science Center, Notre Dame, IN 46556, USA
| | - C E Anderson
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN 37691, USA
| | - R Hasan
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN 37691, USA
| | - A C Pearson
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN 37691, USA
| | - M N Ekwudo
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN 37691, USA
| | - J R Bidwell
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN 37691, USA
| | - L Y Yampolsky
- Department of Biological Sciences, East Tennessee State University, Johnson City, TN 37691, USA
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