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For: Bruggeman FJ, Teusink B, Steuer R. Trade-offs between the instantaneous growth rate and long-term fitness: Consequences for microbial physiology and predictive computational models. Bioessays 2023;45:e2300015. [PMID: 37559168 DOI: 10.1002/bies.202300015] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2023] [Revised: 07/14/2023] [Accepted: 07/19/2023] [Indexed: 08/11/2023]
Number Cited by Other Article(s)
1
Olavarria K, Sousa DZ. Thermodynamic tools for more efficient biotechnological processes: an example in poly-(3-hydroxybutyrate) production from carbon monoxide. Curr Opin Biotechnol 2024;90:103212. [PMID: 39357457 DOI: 10.1016/j.copbio.2024.103212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2024] [Revised: 08/19/2024] [Accepted: 09/14/2024] [Indexed: 10/04/2024]
2
Höper R, Komkova D, Zavřel T, Steuer R. A quantitative description of light-limited cyanobacterial growth using flux balance analysis. PLoS Comput Biol 2024;20:e1012280. [PMID: 39102434 PMCID: PMC11326710 DOI: 10.1371/journal.pcbi.1012280] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Revised: 08/15/2024] [Accepted: 06/26/2024] [Indexed: 08/07/2024]  Open
3
Bourrat P, Deaven K, Villegas C. Evolvability: filling the explanatory gap between adaptedness and the long-term mathematical conception of fitness. BIOLOGY & PHILOSOPHY 2024;39:15. [PMID: 39021712 PMCID: PMC11249714 DOI: 10.1007/s10539-024-09951-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/30/2023] [Accepted: 06/12/2024] [Indexed: 07/20/2024]
4
Garcia-Gutierrez E, Monteoliva García G, Bodea I, Cotter PD, Iguaz A, Garre A. A secondary model for the effect of pH on the variability in growth fitness of Listeria innocua strains. Food Res Int 2024;186:114314. [PMID: 38729708 DOI: 10.1016/j.foodres.2024.114314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Revised: 04/11/2024] [Accepted: 04/16/2024] [Indexed: 05/12/2024]
5
Berkvens A, Salinas L, Remeijer M, Planqué R, Teusink B, Bruggeman FJ. Understanding and computational design of genetic circuits of metabolic networks. Essays Biochem 2024;68:41-51. [PMID: 38662439 PMCID: PMC11065555 DOI: 10.1042/ebc20230045] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 03/28/2024] [Accepted: 03/28/2024] [Indexed: 05/01/2024]
6
Yuan H, Bai Y, Li X, Fu X. Cross-regulation between proteome reallocation and metabolic flux redistribution governs bacterial growth transition kinetics. Metab Eng 2024;82:60-68. [PMID: 38309620 DOI: 10.1016/j.ymben.2024.01.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 11/28/2023] [Accepted: 01/25/2024] [Indexed: 02/05/2024]
7
Qiu S, Huang Y, Liang S, Zeng H, Yang A. Systematic elucidation of independently modulated genes in Lactiplantibacillus plantarum reveals a trade-off between secondary and primary metabolism. Microb Biotechnol 2024;17:e14425. [PMID: 38393514 PMCID: PMC10886434 DOI: 10.1111/1751-7915.14425] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 02/02/2024] [Indexed: 02/25/2024]  Open
8
Flamholz AI, Goyal A, Fischer WW, Newman DK, Phillips R. The proteome is a terminal electron acceptor. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.01.31.578293. [PMID: 38352589 PMCID: PMC10862836 DOI: 10.1101/2024.01.31.578293] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 02/25/2024]
9
Bruggeman FJ, Remeijer M, Droste M, Salinas L, Wortel M, Planqué R, Sauro HM, Teusink B, Westerhoff HV. Whole-cell metabolic control analysis. Biosystems 2023;234:105067. [PMID: 39492480 DOI: 10.1016/j.biosystems.2023.105067] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 10/23/2023] [Accepted: 10/25/2023] [Indexed: 11/05/2024]
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