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Kim SH, Singh D, Kim SA, Kwak MJ, Cho D, Kim J, Roh JH, Kim WG, Han NS, Lee CH. Strain-specific metabolomic diversity of Lactiplantibacillus plantarum under aerobic and anaerobic conditions. Food Microbiol 2023; 116:104364. [PMID: 37689426 DOI: 10.1016/j.fm.2023.104364] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/09/2023] [Revised: 07/31/2023] [Accepted: 08/11/2023] [Indexed: 09/11/2023]
Abstract
The chemotaxonomic diversity of 20 Lactiplantibacillus plantarum strains was investigated using non-targeted metabolite profiling under different culture conditions. Multivariate and metabolic pathway analyses based on GC-MS and LC-MS/MS datasets showed that amino acid metabolism, especially 2-hydroxy acids, was enriched under aerobic conditions (AE), whereas fatty acid & sugar metabolism was increased under anaerobic conditions (AN). Based on the metabolite profiles, L. plantarum strains were clustered into three main groups (A, B, and C). Overall, 79 and 83 significantly discriminant metabolites were characterized as chemical markers of AE and AN growth conditions, respectively. Notably, alcohols were more abundant in group A whereas amino acids, peptides, purines, and pyrimidines were significantly higher in group C. 2-hydroxy acids and oxylipins biosynthesized through amino acid and fatty acid metabolism, respectively, were more abundant in groups A and B. Furthermore, we observed a strong correlation between the chemical diversity of L. plantarum groups and their antioxidant activity from metabolite extracts. We propose a non-targeted metabolomic workflow to comprehensively characterize the chemodiversity of L. plantarum strain under different culture conditions, which may help reveal specific biomarkers of individual strains depending on the culture conditions.
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Affiliation(s)
- Su-Hyun Kim
- Department of Bioscience and Biotechnology, Konkuk University, 05029, Seoul, Republic of Korea
| | - Digar Singh
- Department of Bioscience and Biotechnology, Konkuk University, 05029, Seoul, Republic of Korea
| | - Seul-Ah Kim
- Brain Korea 21 Center for Bio-Health Industry, Division of Animal, Horticultural, And Food Sciences, Chungbuk National University, Cheongju, 28644, Republic of Korea
| | - Min Jeong Kwak
- Brain Korea 21 Center for Bio-Health Industry, Division of Animal, Horticultural, And Food Sciences, Chungbuk National University, Cheongju, 28644, Republic of Korea
| | - Donghyun Cho
- Amorepacific R&I Center, 1920, Yonggu-daero, Yongin, 17074, Republic of Korea
| | - Juewon Kim
- Amorepacific R&I Center, 1920, Yonggu-daero, Yongin, 17074, Republic of Korea
| | - Jong-Hwa Roh
- Amorepacific R&I Center, 1920, Yonggu-daero, Yongin, 17074, Republic of Korea
| | - Wan-Gi Kim
- Amorepacific R&I Center, 1920, Yonggu-daero, Yongin, 17074, Republic of Korea
| | - Nam Soo Han
- Brain Korea 21 Center for Bio-Health Industry, Division of Animal, Horticultural, And Food Sciences, Chungbuk National University, Cheongju, 28644, Republic of Korea
| | - Choong Hwan Lee
- Department of Bioscience and Biotechnology, Konkuk University, 05029, Seoul, Republic of Korea; Research Institute for Bioactive-Metabolome Network, Konkuk University, Seoul, Republic of Korea.
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Apak R, Calokerinos A, Gorinstein S, Segundo MA, Hibbert DB, Gülçin İ, Demirci Çekiç S, Güçlü K, Özyürek M, Çelik SE, Magalhães LM, Arancibia-Avila P. Methods to evaluate the scavenging activity of antioxidants toward reactive oxygen and nitrogen species (IUPAC Technical Report). PURE APPL CHEM 2021. [DOI: 10.1515/pac-2020-0902] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
Abstract
This project was aimed to identify the quenching chemistry of biologically important reactive oxygen and nitrogen species (ROS/RNS, including radicals), to show antioxidant action against reactive species through H‐atom and electron transfer reactions, and to evaluate the ROS/RNS scavenging activity of antioxidants with existing analytical methods while emphasizing the underlying chemical principles and advantages/disadvantages of these methods. In this report, we focused on the applications and impact of existing assays on potentiating future research and innovations to evolve better methods enabling a more comprehensive study of different aspects of antioxidants and to provide a vocabulary of terms related to antioxidants and scavengers for ROS/RNS. The main methods comprise the scavenging activity measurement of the hydroxyl radical (•OH), dioxide(•1–) (O2
•–: commonly known as the superoxide radical), dihydrogen dioxide (H2O2: commonly known as hydrogen peroxide), hydroxidochlorine (HOCl: commonly known as hypochlorous acid), dioxidooxidonitrate(1–) (ONOO−: commonly known as the peroxynitrite anion), and the peroxyl radical (ROO•). In spite of the diversity of methods, there is currently a great need to evaluate the scavenging activity of antioxidant compounds in vivo and in vitro. In addition, there are unsatisfactory methods frequently used, such as non-selective UV measurement of H2O2 scavenging, producing negative errors due to incomplete reaction of peroxide with flavonoids in the absence of transition metal ion catalysts. We also discussed the basic mechanisms of spectroscopic and electrochemical nanosensors for measuring ROS/RNS scavenging activity of antioxidants, together with leading trends and challenges and a wide range of applications. This project aids in the identification of reactive species and quantification of scavenging extents of antioxidants through various assays, makes the results comparable and more understandable, and brings a more rational basis to the evaluation of these assays and provides a critical evaluation of existing ROS/RNS scavenging assays to analytical, food chemical, and biomedical/clinical communities by emphasizing the need for developing more refined, rapid, simple, and low‐cost assays and thus opening the market for a wide range of analytical instruments, including reagent kits and sensors.
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Affiliation(s)
- Reşat Apak
- Department of Chemistry , Istanbul University-Cerrahpaşa, Faculty of Engineering , Avcılar, 34320 Istanbul , Turkey
| | - Antony Calokerinos
- Department of Chemistry , National and Kapodistrian University of Athens, School of Sciences , Panepistimiopolis, 15771 Athens , Greece
| | - Shela Gorinstein
- The Hebrew University, Hadassah Medical School, School of Pharmacy, The Institute for Drug Research , Jerusalem , Israel
| | - Marcela Alves Segundo
- Department of Chemical Sciences , LAQV, REQUIMTE, Faculty of Pharmacy, University of Porto , Rua de Jorge Viterbo Ferreira, 228, 4050-313 Porto , Portugal
| | - David Brynn Hibbert
- New South Wales University, School of Chemistry , Sydney , NSW 2052 , Australia
| | - İlhami Gülçin
- Department of Chemistry , Faculty of Science, Atatürk University , Erzurum , Turkey
| | - Sema Demirci Çekiç
- Department of Chemistry , Istanbul University-Cerrahpaşa, Faculty of Engineering , Avcılar, 34320 Istanbul , Turkey
| | - Kubilay Güçlü
- Department of Chemistry , Adnan Menderes University, Faculty of Arts and Sciences , Aydın , Turkey
| | - Mustafa Özyürek
- Department of Chemistry , Istanbul University-Cerrahpaşa, Faculty of Engineering , Avcılar, 34320 Istanbul , Turkey
| | - Saliha Esin Çelik
- Department of Chemistry , Istanbul University-Cerrahpaşa, Faculty of Engineering , Avcılar, 34320 Istanbul , Turkey
| | - Luís M. Magalhães
- Department of Chemical Sciences , LAQV, REQUIMTE, Faculty of Pharmacy, University of Porto , Rua de Jorge Viterbo Ferreira, 228, 4050-313 Porto , Portugal
| | - Patricia Arancibia-Avila
- Departamento de Ciencias Básicas , Laboratorio de Ecofisiología y Microalgas, Universidad del Bio-Bio , Chillán , Chile
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Khan MSS, Syeed SH, Uddin MH, Akter L, Ullah MA, Jahan S, Rashid MH. Screening and evaluation of antioxidant, antimicrobial, cytotoxic, thrombolytic and membrane stabilizing properties of the methanolic extract and solvent-solvent partitioning effect of Vitex negundo Bark. ASIAN PACIFIC JOURNAL OF TROPICAL DISEASE 2013. [DOI: 10.1016/s2222-1808(13)60090-0] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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