1
|
Kolitha BS, Jayasekara SK, Tannenbaum R, Jasiuk IM, Jayakody LN. Repurposing of waste PET by microbial biotransformation to functionalized materials for additive manufacturing. J Ind Microbiol Biotechnol 2023; 50:kuad010. [PMID: 37248049 PMCID: PMC10549213 DOI: 10.1093/jimb/kuad010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2023] [Accepted: 05/20/2023] [Indexed: 05/31/2023]
Abstract
Plastic waste is an outstanding environmental thread. Poly(ethylene terephthalate) (PET) is one of the most abundantly produced single-use plastics worldwide, but its recycling rates are low. In parallel, additive manufacturing is a rapidly evolving technology with wide-ranging applications. Thus, there is a need for a broad spectrum of polymers to meet the demands of this growing industry and address post-use waste materials. This perspective article highlights the potential of designing microbial cell factories to upcycle PET into functionalized chemical building blocks for additive manufacturing. We present the leveraging of PET hydrolyzing enzymes and rewiring the bacterial C2 and aromatic catabolic pathways to obtain high-value chemicals and polymers. Since PET mechanical recycling back to original materials is cost-prohibitive, the biochemical technology is a viable alternative to upcycle PET into novel 3D printing materials, such as replacements for acrylonitrile butadiene styrene. The presented hybrid chemo-bio approaches potentially enable the manufacturing of environmentally friendly degradable or higher-value high-performance polymers and composites and their reuse for a circular economy. ONE-SENTENCE SUMMARY Biotransformation of waste PET to high-value platform chemicals for additive manufacturing.
Collapse
Affiliation(s)
- Bhagya S Kolitha
- School of Biological Science, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
| | - Sandhya K Jayasekara
- School of Biological Science, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
| | - Rina Tannenbaum
- Department of Materials Science and Chemical Engineering, the Stony Brook University Cancer Center, Stony Brook University, Stony Brook, NY 11794, USA
| | - Iwona M Jasiuk
- Department of Mechanical Science and Engineering, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA
| | - Lahiru N Jayakody
- School of Biological Science, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
- Fermentation Science Institute, Southern Illinois University Carbondale, Carbondale, IL 62901, USA
| |
Collapse
|
2
|
Yu J, Ge J, Yu H, Ye L. Improved Bioproduction of the Nylon 12 Monomer by Combining the Directed Evolution of P450 and Enhancing Heme Synthesis. Molecules 2023; 28:molecules28041758. [PMID: 36838746 PMCID: PMC9963201 DOI: 10.3390/molecules28041758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Revised: 02/04/2023] [Accepted: 02/08/2023] [Indexed: 02/15/2023] Open
Abstract
The nylon 12 (PA12) monomer ω-aminododecanoic acid (ω-AmDDA) could be synthesized from lauric acid (DDA) through multi-enzyme cascade transformation using engineered E. coli, with the P450 catalyzing terminal hydroxylation of DDA as a rate-limiting enzyme. Its activity is jointly determined by the heme domain and the reductase domain. To obtain a P450 mutant with higher activity, directed evolution was conducted using a colorimetric high-throughput screening (HTS) system with DDA as the real substrate. After two rounds of directed evolution, a positive double-site mutant (R14R/D629G) with 90.3% higher activity was obtained. Molecular docking analysis, kinetic parameter determination and protein electrophoresis suggested the improved soluble expression of P450 resulting from the synonymous mutation near the N-terminus and the shortened distance of the electron transfer between FMN and FAD caused by D629G mutation as the major reasons for activity improvement. The significantly increased kcat and unchanged Km provided further evidence for the increase in electron transfer efficiency. Considering the important role of heme in P450, its supply was strengthened by the metabolic engineering of the heme synthesis pathway. By combining P450-directed evolution and enhancing heme synthesis, 2.02 ± 0.03 g/L of ω-AmDDA was produced from 10 mM DDA, with a yield of 93.6%.
Collapse
Affiliation(s)
- Jiaming Yu
- Key Laboratory of Biomass Chemical Engineering (Education Ministry), College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Jiawei Ge
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
| | - Hongwei Yu
- Key Laboratory of Biomass Chemical Engineering (Education Ministry), College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
- Correspondence: (H.Y.); (L.Y.)
| | - Lidan Ye
- Key Laboratory of Biomass Chemical Engineering (Education Ministry), College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou 310058, China
- Correspondence: (H.Y.); (L.Y.)
| |
Collapse
|
3
|
Non-Solvent- and Temperature-Induced Phase Separations of Polylaurolactam Solutions in Benzyl Alcohol as Methods for Producing Microfiltration Membranes. COLLOIDS AND INTERFACES 2023. [DOI: 10.3390/colloids7010010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Abstract
The possibility of obtaining porous films through solutions of polylaurolactam (PA12) in benzyl alcohol (BA) was considered. The theoretical calculation of the phase diagram showed the presence of the upper critical solution temperature (UCST) for the PA12/BA system at 157 °C. The PA12 completely dissolved in BA at higher temperatures, but the resulting solutions underwent phase separation upon cooling down to 120–140 °C because of the PA12’s crystallization. The viscosity of the 10–40% PA12 solutions increased according to a power law but remained low and did not exceed 5 Pa·s at 160 °C. Regardless of the concentration, PA12 formed a dispersed phase when its solutions were cooled, which did not allow for the obtention of strong films. On the contrary, the phase separation of the 20–30% PA12 solutions under the action of a non-solvent (isopropanol) leads to the formation of flexible microporous films. The measurement of the porosity, wettability, strength, permeability, and rejection of submicron particles showed the best results for a porous film produced from a 30% solution by non-solvent-induced phase separation. This process makes it possible to obtain a membrane material with a 240 nm particle rejection of 99.6% and a permeate flow of 1.5 kg/m2hbar for contaminated water and 69.9 kg/m2hbar for pure water.
Collapse
|
4
|
Park G, Kim YC, Jang M, Park H, Lee HW, Jeon W, Kim BG, Choi KY, Ahn J. Biosynthesis of aliphatic plastic monomers with amino residues in Yarrowia lipolytica. Front Bioeng Biotechnol 2023; 10:825576. [PMID: 36714625 PMCID: PMC9875067 DOI: 10.3389/fbioe.2022.825576] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Accepted: 12/15/2022] [Indexed: 01/12/2023] Open
Abstract
Introduciton: The α,ω-diamines (NH2-(CH2)n-NH2) and ω -amino fatty acids (NH2-(CH2)n-COOH) have been widely used as building blocks in polymerindustries. Medium- to long-chain (C8 to C18) fatty acid monomers with amino residues are almost exclusively produced via chemical processes that generate hazardous waste and induce severe environmental problems, such as global warming and pollution. Here, we present the construction platformstrains of Yarrowia lipolytica a cheese-ripening yeast, for direct biotransformation of hydrocarbons into medium- to long-chain α,ω-diamines and ωamino fatty acids using metabolic engineering of endogenous fatty acid ω- and β-oxidation pathways and introducing heterologous ω-transaminase in Y. lipolytica. Methods: We deleted six genes encoding the acyl-CoA oxidase (ACO1-6) and four fatty aldehyde dehydrogenase genes (FALDH1-4), which catalyze fatty acid β-oxidation and downstream oxidation of fatty aldehydes in Y. lipolytica, respectively. The ω-transaminase from Chromobacterium violaceum DSM30191 was introduced into the genome of the ΔPOX ΔFALDH strain under the control of Y. lipolytica-derived EXP1 promoters. Results and Discussion: The ΔPOX ΔFALDH strains with ω-CvTA successfully accumulated the corresponding C12 αω-diamines into a shaking culture medium with dodecane or dodecanol. In addition, these strains accumulated C12 ω-amino fatty acids from dodecanoic acid. With the commercially available α,ω-diacid bioprocess, this yeast biosynthesis producing medium- and longchain α,ω-diamines and ω-amino fatty acids could complete the yeast platform technology generating all medium- and long-chain aliphatic polyamide monomers, α,ω-biofunctionalized with one or both carboxylic acid and amino residues.
Collapse
Affiliation(s)
- Gyuyeon Park
- Department of Bioprocess Engineering, University of Science and Technology (UST) of Korea, Daejeon, South Korea
| | - Ye Chan Kim
- School of Chemical and Biological Engineering, Seoul National University, Seoul, South Korea
| | - Minjeong Jang
- Biotechnology Process Engineering Center, Korea Research Institute of Biosceince and Biotechnology (KRIBB), Daejeon, Chungcheongbuk-do, South Korea
| | - Hyuna Park
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, Gyeonggi-do, South Korea
| | - Hong-Weon Lee
- Department of Bioprocess Engineering, University of Science and Technology (UST) of Korea, Daejeon, South Korea,Biotechnology Process Engineering Center, Korea Research Institute of Biosceince and Biotechnology (KRIBB), Daejeon, Chungcheongbuk-do, South Korea
| | - Wooyoung Jeon
- Department of Bioprocess Engineering, University of Science and Technology (UST) of Korea, Daejeon, South Korea,Biotechnology Process Engineering Center, Korea Research Institute of Biosceince and Biotechnology (KRIBB), Daejeon, Chungcheongbuk-do, South Korea
| | - Byung-Gee Kim
- School of Chemical and Biological Engineering, Seoul National University, Seoul, South Korea
| | - Kwon-Young Choi
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, Gyeonggi-do, South Korea,Department of Environmental and Safety Engineering, College of Engineering, Ajou University, Suwon, Gyeonggi-do, South Korea,*Correspondence: Kwon-Young Choi, ; Jungoh Ahn,
| | - Jungoh Ahn
- Department of Bioprocess Engineering, University of Science and Technology (UST) of Korea, Daejeon, South Korea,Biotechnology Process Engineering Center, Korea Research Institute of Biosceince and Biotechnology (KRIBB), Daejeon, Chungcheongbuk-do, South Korea,*Correspondence: Kwon-Young Choi, ; Jungoh Ahn,
| |
Collapse
|
5
|
Park H, Bak D, Jeon W, Jang M, Ahn JO, Choi KY. Engineering of CYP153A33 With Enhanced Ratio of Hydroxylation to Overoxidation Activity in Whole-Cell Biotransformation of Medium-Chain 1-Alkanols. Front Bioeng Biotechnol 2022; 9:817455. [PMID: 35059390 PMCID: PMC8764613 DOI: 10.3389/fbioe.2021.817455] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2021] [Accepted: 12/13/2021] [Indexed: 12/21/2022] Open
Abstract
α,ω-Dodecanediol is a versatile material that has been widely used not only as an adhesive and crosslinking reagent, but also as a building block in the pharmaceutical and polymer industries. The biosynthesis of α,ω-dodecanediol from fatty derivatives, such as dodecane and dodecanol, requires an ω-specific hydroxylation step using monooxygenase enzymes. An issue with the whole-cell biotransformation of 1-dodecanol using cytochrome P450 monooxygenase (CYP) with ω-specific hydroxylation activity was the low conversion and production of the over-oxidized product of dodecanoic acid. In this study, CYP153A33 from Marinobacter aquaeolei was engineered to obtain higher ω-specific hydroxylation activity through site-directed mutagenesis. The target residue was mutated to increase flux toward α,ω-dodecanediol synthesis, while reducing the generation of the overoxidation product of dodecanoic acid and α,ω-dodecanedioic acid. Among the evaluated variants, CYP153A33 P136A showed a significant increase in 1-dodecanol conversion, i.e., 71.2% (7.12 mM from 10 mM 1-dodecanol), with an increased hydroxylation to over-oxidation activity ratio, i.e., 32.4. Finally, the applicability of this engineered enzyme for ω-specific hydroxylation against several 1-alkanols, i.e., from C6 to C16, was investigated and discussed based on the structure-activity relationship.
Collapse
Affiliation(s)
- Hyuna Park
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, South Korea
| | - Doyeong Bak
- Department of Environmental and Safety Engineering, College of Engineering, Ajou University, Suwon, South Korea
| | - Wooyoung Jeon
- Biotechnology Process Engineering Center, Korea Research Institute of Biosceince and Biotechnology (KRIBB), Cheongju, South Korea
| | - Minjung Jang
- Biotechnology Process Engineering Center, Korea Research Institute of Biosceince and Biotechnology (KRIBB), Cheongju, South Korea
| | - Jung-Oh Ahn
- Biotechnology Process Engineering Center, Korea Research Institute of Biosceince and Biotechnology (KRIBB), Cheongju, South Korea.,Department of Bioprocess Engineering, University of Science and Technology (UST), Daejeon, South Korea
| | - Kwon-Young Choi
- Department of Environmental Engineering, College of Engineering, Ajou University, Suwon, South Korea.,Department of Environmental and Safety Engineering, College of Engineering, Ajou University, Suwon, South Korea
| |
Collapse
|
6
|
Cha TY, Yong Y, Park H, Yun HJ, Jeon W, Ahn JO, Choi KY. Biosynthesis of C12 Fatty Alcohols by Whole Cell Biotransformation of C12 Derivatives Using Escherichia coli Two-cell Systems Expressing CAR and ADH. BIOTECHNOL BIOPROC E 2021. [DOI: 10.1007/s12257-020-0239-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
|
7
|
A multi-enzyme cascade reaction for the production of α,ω-dicarboxylic acids from free fatty acids. J IND ENG CHEM 2021. [DOI: 10.1016/j.jiec.2021.03.029] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
8
|
Whole Cell Biotransformation of 1-dodecanol by Escherichia coli by Soluble Expression of ADH Enzyme from Yarrowia lipolytica. BIOTECHNOL BIOPROC E 2021. [DOI: 10.1007/s12257-020-0176-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
|
9
|
Sarak S, Sung S, Jeon H, Patil MD, Khobragade TP, Pagar AD, Dawson PE, Yun H. An Integrated Cofactor/Co-Product Recycling Cascade for the Biosynthesis of Nylon Monomers from Cycloalkylamines. Angew Chem Int Ed Engl 2021; 60:3481-3486. [PMID: 33140477 DOI: 10.1002/anie.202012658] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2020] [Indexed: 11/10/2022]
Abstract
We report a highly atom-efficient integrated cofactor/co-product recycling cascade employing cycloalkylamines as multifaceted starting materials for the synthesis of nylon building blocks. Reactions using E. coli whole cells as well as purified enzymes produced excellent conversions ranging from >80 and 95 % into desired ω-amino acids, respectively with varying substrate concentrations. The applicability of this tandem biocatalytic cascade was demonstrated to produce the corresponding lactams by employing engineered biocatalysts. For instance, ϵ-caprolactam, a valuable polymer building block was synthesized with 75 % conversion from 10 mM cyclohexylamine by employing whole-cell biocatalysts. This cascade could be an alternative for bio-based production of ω-amino acids and corresponding lactam compounds.
Collapse
Affiliation(s)
- Sharad Sarak
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 050-29, South Korea
| | - Sihyong Sung
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 050-29, South Korea
| | - Hyunwoo Jeon
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 050-29, South Korea
| | - Mahesh D Patil
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 050-29, South Korea
| | - Taresh P Khobragade
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 050-29, South Korea
| | - Amol D Pagar
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 050-29, South Korea
| | - Philip E Dawson
- Department of Chemistry, The Scripps Research Institute, 10550 N. Torrey Pines Road, La Jolla, CA, 92037, USA
| | - Hyungdon Yun
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul, 050-29, South Korea
| |
Collapse
|
10
|
Sarak S, Sung S, Jeon H, Patil MD, Khobragade TP, Pagar AD, Dawson PE, Yun H. An Integrated Cofactor/Co‐Product Recycling Cascade for the Biosynthesis of Nylon Monomers from Cycloalkylamines. Angew Chem Int Ed Engl 2020. [DOI: 10.1002/ange.202012658] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Sharad Sarak
- Department of Systems Biotechnology Konkuk University 120 Neungdong-ro, Gwangjin-gu Seoul 050-29 South Korea
| | - Sihyong Sung
- Department of Systems Biotechnology Konkuk University 120 Neungdong-ro, Gwangjin-gu Seoul 050-29 South Korea
| | - Hyunwoo Jeon
- Department of Systems Biotechnology Konkuk University 120 Neungdong-ro, Gwangjin-gu Seoul 050-29 South Korea
| | - Mahesh D. Patil
- Department of Systems Biotechnology Konkuk University 120 Neungdong-ro, Gwangjin-gu Seoul 050-29 South Korea
| | - Taresh P. Khobragade
- Department of Systems Biotechnology Konkuk University 120 Neungdong-ro, Gwangjin-gu Seoul 050-29 South Korea
| | - Amol D. Pagar
- Department of Systems Biotechnology Konkuk University 120 Neungdong-ro, Gwangjin-gu Seoul 050-29 South Korea
| | - Philip E. Dawson
- Department of Chemistry The Scripps Research Institute 10550 N. Torrey Pines Road La Jolla CA 92037 USA
| | - Hyungdon Yun
- Department of Systems Biotechnology Konkuk University 120 Neungdong-ro, Gwangjin-gu Seoul 050-29 South Korea
| |
Collapse
|
11
|
Ge J, Yang X, Yu H, Ye L. High-yield whole cell biosynthesis of Nylon 12 monomer with self-sufficient supply of multiple cofactors. Metab Eng 2020; 62:172-185. [PMID: 32927060 DOI: 10.1016/j.ymben.2020.09.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2020] [Revised: 07/09/2020] [Accepted: 09/09/2020] [Indexed: 12/19/2022]
Abstract
Biosynthesis of Nylon 12 monomer using dodecanoic acid (DDA) or its esters as the renewable feedstock typically involves ω-hydroxylation, oxidation and ω-amination. The dependence of hydroxylation and oxidation-catalyzing enzymes on redox cofactors, and the requirement of L-alanine as the co-substrate and pyridoxal 5'-phosphate (PLP) as the coenzyme for transamination, raise the issue of redox imbalance and cofactor shortage, challenging the development of efficient biocatalysts. Simultaneous regeneration of the redox equivalents, PLP and L-alanine required in the artificial pathway was enabled by its interfacing with the native metabolism of the host using glucose dehydrogenase (GDH), L-alanine dehydrogenase (AlaDH) and an exogenous ribose 5-phosphate (R5P)-dependent PLP synthesis pathway as bridges. Further engineering of the host by blocking β-oxidation and enhancing substrate uptake improved the ω-aminododecanoic acid (ω-AmDDA) yield to 96.5%. This study offers a strategy to resolve the cofactor imbalance issue commonly encountered in whole-cell biocatalysis and meanwhile lays a solid foundation for Nylon 12 bioproduction.
Collapse
Affiliation(s)
- Jiawei Ge
- Key Laboratory of Biomass Chemical Engineering (Education Ministry), College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China; Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Xiaohong Yang
- Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Hongwei Yu
- Key Laboratory of Biomass Chemical Engineering (Education Ministry), College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China; Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China
| | - Lidan Ye
- Key Laboratory of Biomass Chemical Engineering (Education Ministry), College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China; Institute of Bioengineering, College of Chemical and Biological Engineering, Zhejiang University, Hangzhou, 310027, China.
| |
Collapse
|
12
|
Enzymatic Synthesis of Aliphatic Primary ω-Amino Alcohols from ω-Amino Fatty Acids by Carboxylic Acid Reductase. Catal Letters 2020. [DOI: 10.1007/s10562-020-03233-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
|
13
|
Park HA, Choi KY. α, ω-Oxyfunctionalization of C12 alkanes via whole-cell biocatalysis of CYP153A from Marinobacter aquaeolei and a new CYP from Nocardia farcinica IFM10152. Biochem Eng J 2020. [DOI: 10.1016/j.bej.2020.107524] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
|
14
|
Farhat W, Biundo A, Stamm A, Malmström E, Syrén P. Lactone monomers obtained by enzyme catalysis and their use in reversible thermoresponsive networks. J Appl Polym Sci 2020. [DOI: 10.1002/app.48949] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Wissam Farhat
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Department of Fibre and Polymer TechnologyKTH Royal Institute of Technology Teknikringen 56‐58, 100 44 Stockholm Sweden
- Science for Life Laboratory, Division of Protein TechnologyKTH Royal Institute of Technology Tomtebodavägen 23, Box 1031, 171 21 Solna Stockholm Sweden
| | - Antonino Biundo
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Department of Fibre and Polymer TechnologyKTH Royal Institute of Technology Teknikringen 56‐58, 100 44 Stockholm Sweden
- Science for Life Laboratory, Division of Protein TechnologyKTH Royal Institute of Technology Tomtebodavägen 23, Box 1031, 171 21 Solna Stockholm Sweden
| | - Arne Stamm
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Department of Fibre and Polymer TechnologyKTH Royal Institute of Technology Teknikringen 56‐58, 100 44 Stockholm Sweden
- Science for Life Laboratory, Division of Protein TechnologyKTH Royal Institute of Technology Tomtebodavägen 23, Box 1031, 171 21 Solna Stockholm Sweden
| | - Eva Malmström
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Department of Fibre and Polymer TechnologyKTH Royal Institute of Technology Teknikringen 56‐58, 100 44 Stockholm Sweden
- Wallenberg Wood Science CenterKTH Royal Institute of Technology Teknikringen 56‐58, 100 44 Stockholm Sweden
| | - Per‐Olof Syrén
- School of Engineering Sciences in Chemistry, Biotechnology and Health, Department of Fibre and Polymer TechnologyKTH Royal Institute of Technology Teknikringen 56‐58, 100 44 Stockholm Sweden
- Science for Life Laboratory, Division of Protein TechnologyKTH Royal Institute of Technology Tomtebodavägen 23, Box 1031, 171 21 Solna Stockholm Sweden
- Wallenberg Wood Science CenterKTH Royal Institute of Technology Teknikringen 56‐58, 100 44 Stockholm Sweden
| |
Collapse
|
15
|
Whole-cell biocatalysis using cytochrome P450 monooxygenases for biotransformation of sustainable bioresources (fatty acids, fatty alkanes, and aromatic amino acids). Biotechnol Adv 2020; 40:107504. [PMID: 31926255 DOI: 10.1016/j.biotechadv.2020.107504] [Citation(s) in RCA: 37] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Revised: 12/09/2019] [Accepted: 01/06/2020] [Indexed: 12/25/2022]
Abstract
Cytochrome P450s (CYPs) are heme-thiolated enzymes that catalyze the oxidation of CH bonds in a regio and stereoselective manner. Activation of the non-activated carbon atom can be further enhanced by multistep chemo-enzymatic reactions; moreover, several useful chemicals can be synthesized to provide alternative organic synthesis routes. Given their versatile functionality, CYPs show promise in a number of biotechnological fields. Recently, various CYPs, along with their sequences and functionalities, have been identified owing to rapid developments in sequencing technology and molecular biotechnology. In addition to these discoveries, attempts have been made to utilize CYPs to industrially produce biochemicals from available and sustainable bioresources such as oil, amino acids, carbohydrates, and lignin. Here, these accomplishments, particularly those involving the use of CYP enzymes as whole-cell biocatalysts for bioresource biotransformation, will be reviewed. Further, recently developed biotransformation pathways that result in gram-scale yields of fatty acids and fatty alkanes as well as aromatic amino acids, which depend on the hosts used for CYP expression, and the nature of the multistep reactions will be discussed. These pathways are similar regardless of whether the hosts are CYP-producing or non-CYP-producing; the limitations of these methods and the ways to overcome them are reviewed here.
Collapse
|
16
|
Li Y, Liu S, You C. Permeabilized
Escherichia coli
Whole Cells Containing Co‐Expressed Two Thermophilic Enzymes Facilitate the Synthesis of
scyllo
‐Inositol from
myo
‐Inositol. Biotechnol J 2019; 15:e1900191. [DOI: 10.1002/biot.201900191] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Revised: 08/28/2019] [Indexed: 12/17/2022]
Affiliation(s)
- Yuan Li
- Tianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 P. R. China
| | - Shan Liu
- Tianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 P. R. China
| | - Chun You
- Tianjin Institute of Industrial BiotechnologyChinese Academy of Sciences Tianjin 300308 P. R. China
- University of Chinese Academy of Sciences Beijing 100049 China
| |
Collapse
|
17
|
Kinetic Resolution of Racemic Amines to Enantiopure (S)-amines by a Biocatalytic Cascade Employing Amine Dehydrogenase and Alanine Dehydrogenase. Catalysts 2019. [DOI: 10.3390/catal9070600] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022] Open
Abstract
Amine dehydrogenases (AmDHs) efficiently catalyze the NAD(P)H-dependent asymmetric reductive amination of prochiral carbonyl substrates with high enantioselectivity. AmDH-catalyzed oxidative deamination can also be used for the kinetic resolution of racemic amines to obtain enantiopure amines. In the present study, kinetic resolution was carried out using a coupled-enzyme cascade consisting of AmDH and alanine dehydrogenase (AlaDH). AlaDH efficiently catalyzed the conversion of pyruvate to alanine, thus recycling the nicotinamide cofactors and driving the reaction forward. The ee values obtained for the kinetic resolution of 25 and 50 mM rac-α-methylbenzylamine using the purified enzymatic systems were only 54 and 43%, respectively. The use of whole-cells apparently reduced the substrate/product inhibition, and the use of only 30 and 40 mgDCW/mL of whole-cells co-expressing AmDH and AlaDH efficiently resolved 100 mM of rac-2-aminoheptane and rac-α-methylbenzylamine into the corresponding enantiopure (S)-amines. Furthermore, the applicability of the reaction protocol demonstrated herein was also successfully tested for the efficient kinetic resolution of wide range of racemic amines.
Collapse
|
18
|
Yoon S, Patil MD, Sarak S, Jeon H, Kim G, Khobragade TP, Sung S, Yun H. Deracemization of Racemic Amines to Enantiopure (
R
)‐ and (
S
)‐amines by Biocatalytic Cascade Employing ω‐Transaminase and Amine Dehydrogenase. ChemCatChem 2019. [DOI: 10.1002/cctc.201900080] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Affiliation(s)
- Sanghan Yoon
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| | - Mahesh D. Patil
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| | - Sharad Sarak
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| | - Hyunwoo Jeon
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| | - Geon‐Hee Kim
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| | - Taresh P. Khobragade
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| | - Sihyong Sung
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| | - Hyungdon Yun
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro, Gwanjin-gu Seoul 050-29 South Korea
| |
Collapse
|
19
|
Cytochrome P450 Monooxygenases in Biotechnology and Synthetic Biology. Trends Biotechnol 2019; 37:882-897. [PMID: 30739814 DOI: 10.1016/j.tibtech.2019.01.001] [Citation(s) in RCA: 202] [Impact Index Per Article: 40.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2018] [Revised: 12/28/2018] [Accepted: 01/03/2019] [Indexed: 12/14/2022]
Abstract
Cytochromes P450 (P450 or CYP) are heme-containing enzymes that catalyze the introduction of one atom of molecular oxygen into nonactivated C-H bonds, often in a regio- and stereoselective manner. This ability, combined with a tremendous number of accepted substrates, makes P450s powerful biocatalysts. Sixty years after their discovery, P450 systems are recognized as essential bio-bricks in synthetic biology approaches to enable production of high-value complex molecules in recombinant hosts. Recent impressive results in protein engineering led to P450s with tailored properties that are even able to catalyze abiotic reactions. The introduction of P450s in artificial multi-enzymatic cascades reactions and chemo-enzymatic processes offers exciting future perspectives to access novel compounds that cannot be synthesized by nature or by chemical routes.
Collapse
|
20
|
Kim G, Jeon H, Khobragade TP, Patil MD, Sung S, Yoon S, Won Y, Sarak S, Yun H. Glutamate as an Efficient Amine Donor for the Synthesis of Chiral β‐ and γ‐Amino Acids Using Transaminase. ChemCatChem 2019. [DOI: 10.1002/cctc.201802048] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Geon‐Hee Kim
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Hyunwoo Jeon
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Taresh P. Khobragade
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Mahesh D. Patil
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Sihyong Sung
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Sanghan Yoon
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Yumi Won
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Sharad Sarak
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| | - Hyungdon Yun
- Department of Systems BiotechnologyKonkuk University 120 Neungdong-ro Gwangjin-gu, Seoul 05029 Korea
| |
Collapse
|
21
|
Gandomkar S, Żądło‐Dobrowolska A, Kroutil W. Extending Designed Linear Biocatalytic Cascades for Organic Synthesis. ChemCatChem 2019; 11:225-243. [PMID: 33520008 PMCID: PMC7814890 DOI: 10.1002/cctc.201801063] [Citation(s) in RCA: 44] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2018] [Indexed: 02/05/2023]
Abstract
Artificial cascade reactions involving biocatalysts have demonstrated a tremendous potential during the recent years. This review just focuses on selected examples of the last year and putting them into context to a previously published suggestion for classification. Subdividing the cascades according to the number of catalysts in the linear sequence, and classifying whether the steps are performed simultaneous or in a sequential fashion as well as whether the reaction sequence is performed in vitro or in vivo allows to organise the concepts. The last year showed, that combinations of in vivo as well as in vitro are possible. Incompatible reaction steps may be run in a sequential fashion or by compartmentalisation of the incompatible steps either by using special reactors (membrane), polymersomes or flow techniques.
Collapse
Affiliation(s)
- Somayyeh Gandomkar
- Institute of ChemistryUniversity of GrazHeinrichstrasse 28Graz8010Austria
| | | | - Wolfgang Kroutil
- Institute of ChemistryUniversity of GrazHeinrichstrasse 28Graz8010Austria
| |
Collapse
|
22
|
Kim GH, Jeon H, Khobragade TP, Patil MD, Sung S, Yoon S, Won Y, Choi IS, Yun H. Enzymatic synthesis of sitagliptin intermediate using a novel ω-transaminase. Enzyme Microb Technol 2019; 120:52-60. [DOI: 10.1016/j.enzmictec.2018.10.003] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2018] [Revised: 09/17/2018] [Accepted: 10/05/2018] [Indexed: 01/10/2023]
|
23
|
Characterization of ELP-fused ω-Transaminase and Its Application for the Biosynthesis of β-Amino Acid. BIOTECHNOL BIOPROC E 2018. [DOI: 10.1007/s12257-018-0268-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
|
24
|
Affiliation(s)
- Mahesh D. Patil
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Korea
| | - Gideon Grogan
- Department of Chemistry, University of York, Heslington, York, YO10 5DD, United Kingdom
| | - Andreas Bommarius
- School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, 950 Atlantic Drive, Atlanta, Georgia 30332-2000, United States
| | - Hyungdon Yun
- Department of Systems Biotechnology, Konkuk University, 120 Neungdong-ro, Gwangjin-gu, Seoul 05029, Korea
| |
Collapse
|
25
|
Lee YC, Chen YY, Lin JS, Chen YW, Li CC, Liang KX, Chan HH, Lin WD, Kao CH. Stereoselective synthesis of (1R, 2S)-norephedrine by recombinant whole-cell biocatalysts coupling acetohydroxyacid synthase I and ω-transaminase. Process Biochem 2018. [DOI: 10.1016/j.procbio.2018.08.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
|
26
|
Patil MD, Grogan G, Yun H. Biocatalyzed C−C Bond Formation for the Production of Alkaloids. ChemCatChem 2018. [DOI: 10.1002/cctc.201801130] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Mahesh D. Patil
- Department of Systems BiotechnologyKonkuk University Seoul 143-701 Korea
| | - Gideon Grogan
- Department of ChemistryUniversity of York Heslington York, YO10 5DD UK
| | - Hyungdon Yun
- Department of Systems BiotechnologyKonkuk University Seoul 143-701 Korea
| |
Collapse
|
27
|
Biosynthesis of Nylon 12 Monomer, ω-Aminododecanoic Acid Using Artificial Self-Sufficient P450, AlkJ and ω-TA. Catalysts 2018. [DOI: 10.3390/catal8090400] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
ω-Aminododecanoic acid is considered as one of the potential monomers of Nylon 12, a high-performance member of the bioplastic family. The biosynthesis of ω-aminododecanoic acid from renewable sources is an attractive process in the polymer industry. Here, we constructed three artificial self-sufficient P450s (ArtssP450s) using CYP153A13 from Alcanivorax borkumensis and cytochrome P450 reductase (CPR) domains of natural self-sufficient P450s (CYP102A1, CYP102A5, and 102D1). Among them, artificial self-sufficient P450 (CYP153A13BM3CPR) with CYP102A1 CPR showed the highest catalytically activity for dodecanoic acid (DDA) substrate. This form of ArtssP450 was further co-expressed with ω-TA from Silicobacter pomeroyi and AlkJ from Pseudomonas putida GPo1. This single-cell system was used for the biotransformation of dodecanoic acid (DDA) to ω-aminododecanoic acid (ω-AmDDA), wherein we could successfully biosynthesize 1.48 mM ω-AmDDA from 10 mM DDA substrate in a one-pot reaction. The productivity achieved in the present study was five times higher than that achieved in our previously reported multistep biosynthesis method (0.3 mM).
Collapse
|
28
|
Recent Advances in ω-Transaminase-Mediated Biocatalysis for the Enantioselective Synthesis of Chiral Amines. Catalysts 2018. [DOI: 10.3390/catal8070254] [Citation(s) in RCA: 105] [Impact Index Per Article: 17.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
|
29
|
Biosynthesis of Medium- to Long-Chain α,ω-Diols from Free Fatty Acids Using CYP153A Monooxygenase, Carboxylic Acid Reductase, and E. coli Endogenous Aldehyde Reductases. Catalysts 2017. [DOI: 10.3390/catal8010004] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023] Open
|