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El Khoury Y, Hellwig P. Far infrared spectroscopy of hydrogen bonding collective motions in complex molecular systems. Chem Commun (Camb) 2017; 53:8389-8399. [DOI: 10.1039/c7cc03496b] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Abstract
Far infrared spectroscopy as a tool for the study of inter and intramolecular interactions in complex molecular structures.
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Affiliation(s)
- Youssef El Khoury
- Laboratoire de Bioélectrochimie et Spectroscopie
- UMR 7140
- CMC
- Université de Strasbourg CNRS
- Strasbourg
| | - Petra Hellwig
- Laboratoire de Bioélectrochimie et Spectroscopie
- UMR 7140
- CMC
- Université de Strasbourg CNRS
- Strasbourg
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Yamamoto K, Tominaga K, Sasakawa H, Tamura A, Murakami H, Ohtake H, Sarukura N. Far-Infrared Absorption Measurements of Polypeptides and Cytochromecby THz Radiation. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2002. [DOI: 10.1246/bcsj.75.1083] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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5
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Agarwal R, Krueger BP, Scholes GD, Yang M, Yom J, Mets L, Fleming GR. Ultrafast Energy Transfer in LHC-II Revealed by Three-Pulse Photon Echo Peak Shift Measurements. J Phys Chem B 2000. [DOI: 10.1021/jp9915578] [Citation(s) in RCA: 98] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ritesh Agarwal
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, and Department of Molecular Genetics and Cell Biology, The University of Chicago, 1101 E. 57th Street, Chicago, Illinois 60637
| | - Brent P. Krueger
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, and Department of Molecular Genetics and Cell Biology, The University of Chicago, 1101 E. 57th Street, Chicago, Illinois 60637
| | - Gregory D. Scholes
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, and Department of Molecular Genetics and Cell Biology, The University of Chicago, 1101 E. 57th Street, Chicago, Illinois 60637
| | - Mino Yang
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, and Department of Molecular Genetics and Cell Biology, The University of Chicago, 1101 E. 57th Street, Chicago, Illinois 60637
| | - Jenny Yom
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, and Department of Molecular Genetics and Cell Biology, The University of Chicago, 1101 E. 57th Street, Chicago, Illinois 60637
| | - Laurens Mets
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, and Department of Molecular Genetics and Cell Biology, The University of Chicago, 1101 E. 57th Street, Chicago, Illinois 60637
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720-1460, and Department of Molecular Genetics and Cell Biology, The University of Chicago, 1101 E. 57th Street, Chicago, Illinois 60637
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6
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Jordanides XJ, Lang MJ, Song X, Fleming GR. Solvation Dynamics in Protein Environments Studied by Photon Echo Spectroscopy. J Phys Chem B 1999. [DOI: 10.1021/jp9910993] [Citation(s) in RCA: 282] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Xanthipe J. Jordanides
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Molecular Biology and Princeton Materials Institute, Princeton University, Princeton, New Jersey 08544, and Department of Chemistry, Iowa State University, Ames, Iowa 50011
| | - Matthew J. Lang
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Molecular Biology and Princeton Materials Institute, Princeton University, Princeton, New Jersey 08544, and Department of Chemistry, Iowa State University, Ames, Iowa 50011
| | - Xueyu Song
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Molecular Biology and Princeton Materials Institute, Princeton University, Princeton, New Jersey 08544, and Department of Chemistry, Iowa State University, Ames, Iowa 50011
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Molecular Biology and Princeton Materials Institute, Princeton University, Princeton, New Jersey 08544, and Department of Chemistry, Iowa State University, Ames, Iowa 50011
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Xie A, He Q, Miller L, Sclavi B, Chance MR. Low frequency vibrations of amino acid homopolymers observed by synchrotron far-ir absorption spectroscopy: Excited state effects dominate the temperature dependence of the spectra. Biopolymers 1999. [DOI: 10.1002/(sici)1097-0282(199906)49:7<591::aid-bip5>3.0.co;2-q] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Moeller KD, Williams GP, Steinhauser S, Hirschmugl C, Smith JC. Hydration-dependent far-infrared absorption in lysozyme detected using synchrotron radiation. Biophys J 1992; 61:276-80. [PMID: 1540696 PMCID: PMC1260241 DOI: 10.1016/s0006-3495(92)81834-9] [Citation(s) in RCA: 26] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Using the National Synchrotron Light Source (NSLS) at Brookhaven far-infrared absorption in the frequency range 15-45 cm-1 was detected in samples of lysozyme at different hydrations and in water. The absorption is due to the presence of low-frequency (picosecond timescale) motion in the samples, such as are calculated in molecular dynamics simulations. The form of the transmission profile is temperature independent but varies significantly with the degree of hydration of the protein. At higher hydrations the profile resembles closely that of pure water in the region 20-45 cm-1. At a low hydration marked differences are seen with, in particular, the appearance of a transmission minimum at 19 cm-1. The possible origins of the hydration dependence are discussed. The results demonstrate the usefulness of long-wavelength synchrotron radiation for the characterisation of biologically-important low-frequency motions in protein samples.
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Affiliation(s)
- K D Moeller
- Department of Physics, Fairleigh-Dickinson University, Teaneck, New Jersey
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Smith JC. Protein dynamics: comparison of simulations with inelastic neutron scattering experiments. Q Rev Biophys 1991; 24:227-91. [PMID: 1749823 DOI: 10.1017/s0033583500003723] [Citation(s) in RCA: 302] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
To deepen our understanding of the principles determining the folding and functioning of globular proteins the determination of their three-dimensional structures must be supplemented with the characterization of their internal motions. Although dynamical events in proteins occur on time-scale ranging from femtoseconds to at least seconds, the physical properties of globular proteins are such that picosecond (ps) time-scale motions make a particularly important contribution to the internal fluctuations of the atoms from their mean positions.
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Affiliation(s)
- J C Smith
- Département de Biologie Cellulaire et Moléculaire, CEN-Saclay, Gif-sur-Yvette, France
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