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Guo X, Wang J, Zhu Z, Zhang M, Li H, Liu J, Ling L. A colorimetric method for the sequence-specific recognition of double-stranded DNA on the surface of a silver-coated glass slide. CAN J CHEM 2018. [DOI: 10.1139/cjc-2017-0544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
Abstract
In this study, a colorimetric method for sequence-specific recognition of double-stranded DNA (dsDNA) was established on the surface of a silver-coated glass slide. Oligo-1 was assembled on the surface of a silver-coated glass slide through an Ag–S bond, and Oligo-2 as reporter was used to bind with streptavidin-horseradish peroxidase (SA–HRP). They could bind with target dsDNA that was composed of Oligo-3 and Oligo-4 on the surface of a silver-coated glass slide through triplex formation. The bound HRP could be moved into the solution by DNase I and catalyze the oxidation of 3,3′,5,5′-tetramethylbenzidine (TMB). Therefore, the concentration of target dsDNA could be determined with the colour change of TMB. Under the optimum conditions, the absorbance was proportional to the concentration of target dsDNA over the range of 100 pmol/L to 2.0 nmol/L, with a detection limit of 13 pmol/L. In addition, this method showed good sequence selectivity, enabling it to be further developed for the detection of other polymerase chain reaction (PCR) products.
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Affiliation(s)
- Xiaoting Guo
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Jing Wang
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Zhifang Zhu
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Manjun Zhang
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Haigang Li
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, P. R. China
| | - Jianmin Liu
- Department of Neurosurgery, the First Affiliated Hospital of Guangzhou University of Traditional Chinese Medicine, Guangzhou 510405, P. R. China
| | - Liansheng Ling
- School of Chemistry, Sun Yat-Sen University, Guangzhou 510275, P. R. China
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2
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Zhu Z, Yuan P, Li S, Garai M, Hong M, Xu QH. Plasmon-Enhanced Fluorescence in Coupled Nanostructures and Applications in DNA Detection. ACS APPLIED BIO MATERIALS 2018. [DOI: 10.1021/acsabm.8b00032] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Zhijun Zhu
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543
- Department of Materials Science and Engineering, Qingdao University, 308 Ningxia Road, Qingdao, China 266071
| | - Peiyan Yuan
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543
| | - Shuang Li
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543
| | - Monalisa Garai
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543
| | - Minghui Hong
- Department of Electric and Computer Engineering, National University of Singapore, 4 Engineering Drive 3, Singapore117583
| | - Qing-Hua Xu
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543
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3
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Akhtar N, Metkar SK, Girigoswami A, Girigoswami K. ZnO nanoflower based sensitive nano-biosensor for amyloid detection. MATERIALS SCIENCE & ENGINEERING. C, MATERIALS FOR BIOLOGICAL APPLICATIONS 2017; 78:960-968. [DOI: 10.1016/j.msec.2017.04.118] [Citation(s) in RCA: 57] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2017] [Revised: 04/17/2017] [Accepted: 04/19/2017] [Indexed: 12/01/2022]
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4
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Ganguly M, Jana J, Pal A, Pal T. Synergism of gold and silver invites enhanced fluorescence for practical applications. RSC Adv 2016. [DOI: 10.1039/c5ra26430h] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
Synergism of gold and silver improves fluorescence behavior of gold–silver bimetallic clusters with practical applications.
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Affiliation(s)
| | - Jayasmita Jana
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Anjali Pal
- Department of Civil Engineering
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Tarasankar Pal
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
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5
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Jana J, Ganguly M, Pal T. Enlightening surface plasmon resonance effect of metal nanoparticles for practical spectroscopic application. RSC Adv 2016. [DOI: 10.1039/c6ra14173k] [Citation(s) in RCA: 140] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Abstract
Pictorial depiction of applications of metal nanoparticles in different fields enlightening surface plasmon resonance effect.
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Affiliation(s)
- Jayasmita Jana
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
| | | | - Tarasankar Pal
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
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6
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Li Y, Ling L. Aptamer-based fluorescent solid-phase thrombin assay using a silver-coated glass substrate and signal amplification by glucose oxidase. Mikrochim Acta 2015. [DOI: 10.1007/s00604-015-1515-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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7
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Ganguly M, Pal J, Mondal C, Pal A, Pal T. Imine (–CHN–) brings selectivity for silver enhanced fluorescence. Dalton Trans 2015; 44:4370-9. [DOI: 10.1039/c4dt04022h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Strong silver and gold stimulated fluorescence enhancement of alkaline salicylaldehyde solution have been observed. Ammonia or primary amine quantitatively eliminates gold enhanced fluorescence, keeping silver enhanced fluorescence unaffected.
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Affiliation(s)
| | - Jaya Pal
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Chanchal Mondal
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Anjali Pal
- Department of Civil Engineering
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Tarasankar Pal
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
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8
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Ganguly M, Jana J, Das B, Dhara S, Pal A, Pal T. Orange-red silver emitters for sensing application and bio-imaging. Dalton Trans 2015; 44:11457-69. [DOI: 10.1039/c5dt00928f] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Abstract
Strongly fluorescent HFL-containing Ag@Au particles are synthesized via a modified hydrothermal technique. This solution is used for sulfide sensing and cell imaging.
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Affiliation(s)
| | - Jayasmita Jana
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Bodhisatwa Das
- School of Medical Science & Technology
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Santanu Dhara
- School of Medical Science & Technology
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Anjali Pal
- Department of Civil Engineering
- Indian Institute of Technology
- Kharagpur-721302
- India
| | - Tarasankar Pal
- Department of Chemistry
- Indian Institute of Technology
- Kharagpur-721302
- India
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9
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Ganguly M, Jana J, Mondal C, Pal A, Pal T. Green synthesis of highly fluorescent Au(i)@Ag2/Ag3-thiolate core–shell particles for selective detection of cysteine and Pb(ii). Phys Chem Chem Phys 2014; 16:18185-97. [DOI: 10.1039/c4cp01782j] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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10
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Ganguly M, Mondal C, Pal J, Pal A, Negishi Y, Pal T. Fluorescent Au(i)@Ag2/Ag3giant cluster for selective sensing of mercury(ii) ion. Dalton Trans 2014; 43:11557-65. [DOI: 10.1039/c4dt01158a] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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11
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Ganguly M, Mondal C, Jana J, Pal A, Pal T. Selective dopamine chemosensing using silver-enhanced fluorescence. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:4120-8. [PMID: 24650302 DOI: 10.1021/la404982t] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
Abstract
Condensation product of salicylaldehyde and 1,3 propylenediamine becomes a diiminic Schiff base, which is oxidized by AgNO3 in alkaline solution, and in turn, stable Ag(0) is produced at room temperature. Under this condition, the solution exhibits intense silver nanoparticle enhanced fluorescence (SEF) with the λ(em) at 412 nm. Dopamine is selectively detected down to the nanomolar level via exclusive fluorescence quenching of the SEF. Dopamine-infested solution regains the fluorescence [i.e., SEF in the presence of Hg(II) ions]. Thus dopamine and Hg(II) in succession demonstrate "turn off/on" fluorescence due to the change in the scattering cross section of Ag(0) and gives a quantitative measure of dopamine in real samples. The proposed method is free from interferences of common biocompetitors.
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Affiliation(s)
- Mainak Ganguly
- Department of Chemistry, Indian Institute of Technology , Kharagpur-721302, India
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12
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Synthesis and Characterization of Silica-Coated Silver Nanoprobe for Paraoxon pesticide Detection. BIONANOSCIENCE 2014. [DOI: 10.1007/s12668-014-0129-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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13
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Ganguly M, Mondal C, Jana J, Pal A, Pal T. Photoproduced fluorescent Au(I)@(Ag2/Ag3)-thiolate giant cluster: an intriguing sensing platform for DMSO and Pb(II). LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2014; 30:348-357. [PMID: 24359547 DOI: 10.1021/la403848z] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Synergistic evolution of fluorescent Au(I)@(Ag2/Ag3)-thiolate core-shell particles has been made possible under the Sun in presence of the respective precursor coinage metal compounds and glutathione (GSH). The green chemically synthesized fluorescent clusters are giant (∼600 nm) in size and robust. Among all the common water miscible solvents, exclusively DMSO exhibits selective fluorescence quenching (Turn Off) because of the removal of GSH from the giant cluster. Again, only Pb(II) ion brings back the lost fluorescence (Turn On) leaving aside all other metal ions. This happens owing to the strong affinity of the sulfur donor of DMSO for Pb(II). Thus, employing the aqueous solution containing the giant cluster, we can detect DMSO contamination in water bodies at trace level. Besides, a selective sensing platform has emerged out for Pb(II) ion with a detection limit of 14 × 10(-8) M. Pb(II) induced fluorescence recovery is again vanished by I(-) implying a promising route to sense I(-) ion.
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Affiliation(s)
- Mainak Ganguly
- Department of Chemistry, Indian Institute of Technology , Kharagpur-721302, West Bengal, India
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14
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Ganguly M, Mondal C, Chowdhury J, Pal J, Pal A, Pal T. The tuning of metal enhanced fluorescence for sensing applications. Dalton Trans 2014; 43:1032-47. [DOI: 10.1039/c3dt52258j] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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15
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Li Y, Song L, Qiao Y. Spontaneous assembly and synchronous scan spectra of gold nanoparticle monolayer Janus film with thiol-terminated polystyrene. RSC Adv 2014. [DOI: 10.1039/c4ra10811f] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Abstract
This communication presents a facile method for preparing ordered hydrophilic metal nanoparticles into gold nanoparticle monolayer Janus film. It also reveals the enhanced light source spectrum properties of the gold nanoparticle film.
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Affiliation(s)
- Yunbo Li
- School of Materials Science & Engineering
- Shanghai University
- Shanghai 200444, China
| | - Linlin Song
- School of Materials Science & Engineering
- Shanghai University
- Shanghai 200444, China
| | - Yisha Qiao
- School of Materials Science & Engineering
- Shanghai University
- Shanghai 200444, China
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16
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Racknor C, Singh MR, Zhang Y, Birch DJS, Chen Y. Energy transfer between a biological labelling dye and gold nanorods. Methods Appl Fluoresc 2013; 2:015002. [DOI: 10.1088/2050-6120/2/1/015002] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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17
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Ganguly M, Pal A, Negishi Y, Pal T. Synthesis of highly fluorescent silver clusters on gold(I) surface. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2013; 29:2033-2043. [PMID: 23311433 DOI: 10.1021/la304835p] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/01/2023]
Abstract
Evolution of fluorescence from a giant core-shell particle is new and synergistic, which requires both gold and silver ions in an appropriate ratio in glutathione (GSH) solution. The formation of highly fluorescent Ag(2)/Ag(3) clusters on the surface of Au(I) assembly results in giant Au(I)(core)-Ag(0)(shell) water-soluble microparticles (~500 nm). Here, Au(I) acts as the template for the generation of fluorescent Ag clusters. The presence of gold under the synthetic strategy is selective, and no other metal supports such synergistic evolution. The core-shell particle exhibits stable and static emission (emission maximum, 565 nm; quantum yield, 4.6%; and stroke shift, 179 nm) with an average lifetime of ~25 ns. The drift of electron density by the Au(I) core presumably enhances the fluorescence. The positively charged core offers unprecedented long-term stability to the microparticles in aqueous GSH solution.
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Affiliation(s)
- Mainak Ganguly
- Department of Chemistry, Indian Institute of Technology, Kharagpur 721302, India
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18
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Diiminic Schiff Bases: An Intriguing Class of Compounds for a Copper-Nanoparticle-Induced Fluorescence Study. Chemistry 2012; 18:15845-55. [DOI: 10.1002/chem.201201242] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2012] [Revised: 08/15/2012] [Indexed: 11/07/2022]
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19
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Abstract
Hyperbranched poly (amino amine) s (HPAMAMs), synthesized by Michael addition of 1-(2-aminoethyl) piperazine (AEPZ) and methyl acrylate (MA), can emit blue fluorescence under excitation wavelength. However, the relatively weak fluorescence of HPAMAMs is still an obstacle for its practical applications. Gold is one of the most frequently used metals for fluorescence enhancement. In this research, the influence of gold nanoparticles on fluorescence property of HPAMAMs was investigated by fluorometry. It was found that gold nanoparticles (GNPs) with smaller size (< 5 nm) presented greatly enhanced emission. The GNPs with larger size (~10 nm in diameter) and definite surface plasmon absorption can quench the fluorescence of HPAMAMs.
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20
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Silver nanoparticles fluorescence enhancement effect for determination of nucleic acids with kaempferol–Al(III). Talanta 2011; 84:1188-94. [DOI: 10.1016/j.talanta.2011.03.031] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2011] [Revised: 02/16/2011] [Accepted: 03/12/2011] [Indexed: 11/21/2022]
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21
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Wróbel D, Dudkowiak A, Goc J. Fluorescence Spectroscopy in Optoelectronics, Photomedicine, and Investigation of Biomolecular Systems. REVIEWS IN FLUORESCENCE 2008 2010. [DOI: 10.1007/978-1-4419-1260-2_10] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
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22
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Fu Y, Lakowicz JR. Modification of single molecule fluorescence near metallic nanostructures. LASER & PHOTONICS REVIEWS 2009; 3:221-232. [PMID: 31131065 PMCID: PMC6530590 DOI: 10.1002/lpor.200810035] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2008] [Accepted: 09/26/2008] [Indexed: 05/06/2023]
Abstract
In recent years there has been a growing interest in the interactions of fluorophores with metallic nanostructures or nanoparticles. The spectra properties of fluorophores can be dramatically modified by near-field interactions with the electron clouds present in metals. Near-field interactions are those occurring within a wavelength distance of an excited fluorophore. These interactions modify the emission in ways not seen in ensemble fluorescence experiments. In this review we provide an insightful description of the photophysics of metal plasmons and near-field interactions. Additionally, we summarize recent works on single-molecule studies on metal-fluorophore interactions and suggest how these effects will result in new classes of experimental procedures, novel probes, bioassays and devices. The spectral properties of single fluorophores can be dramatically altered by near-field interactions with the electron clouds presented in metals.
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Affiliation(s)
- Yi Fu
- Center for fluorescence spectroscopy, University of Maryland School of Medicine, 725 W. Lombard Street, Baltimore, MD 21201, USA
| | - Joseph R. Lakowicz
- Center for fluorescence spectroscopy, University of Maryland School of Medicine, 725 W. Lombard Street, Baltimore, MD 21201, USA
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Fu Y, Zhang J, Lakowicz JR. Reduced blinking and long-lasting fluorescence of single fluorophores coupling to silver nanoparticles. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2008; 24:3429-33. [PMID: 18278953 PMCID: PMC2730019 DOI: 10.1021/la702673p] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Abstract
The fluorescence signal of single organic fluorophores is characterized by random blinking and irreversible photobleaching. Photoinduced blinking of Cy5 has posed various limitations of this popular near-infrared (NIR) probe in biological applications. Here we show that fluorophore-metal nanoparticle (NP) complexes greatly suppress Cy5 blinking and noticeably reduce photobleaching events. The blinking behavior of single Cy5 molecules was investigated and compared in the absence and the presence of silver nanostructures. A power-law distribution of off time population was observed for single Cy5 molecules. Average off times were compared to evaluate the plasmonic effect of silver nanoparticles on the triplet decay rates. We furthermore demonstrate enhanced photostability in the presence of silver NPs. The results show that plasmonic-controlled fluorescence can lead to a novel physical mechanism to enhance fluorescence intensity, reduce blinking, and increase photostability.
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Affiliation(s)
- Yi Fu
- Center for Fluorescence Spectroscopy, University of Maryland School of Medicine, Department of Biochemistry and Molecular Biology, 725 West Lombard Street, Baltimore, Maryland 21201
| | - Jian Zhang
- Center for Fluorescence Spectroscopy, University of Maryland School of Medicine, Department of Biochemistry and Molecular Biology, 725 West Lombard Street, Baltimore, Maryland 21201
| | - Joseph R. Lakowicz
- Center for Fluorescence Spectroscopy, University of Maryland School of Medicine, Department of Biochemistry and Molecular Biology, 725 West Lombard Street, Baltimore, Maryland 21201
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Chowdhury MH, Ray K, Geddes CD, Lakowicz JR. Use of silver nanoparticles to enhance surface plasmon-coupled emission (SPCE). Chem Phys Lett 2008; 452:162-167. [PMID: 19777127 DOI: 10.1016/j.cplett.2007.12.047] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
Abstract
We report that self-assembled monolayers of colloidal silver nanoparticles can increase the intensity of the surface plasmon-coupled emission (SPCE) signal from sulforhodamine 101 (S101). The S101 was spin coated on a glass slide coated with a layer of continuous silver, and a silica layer upon which the nanoparticle layer was self-assembled. Of the various colloid sizes studied, the 40 nm colloids showed both the highest enhancements in the SPCE signal and the largest extent of plasmon coupling, defined as the ratio of SPCE to Free Space signal. Our findings reveal a new technique that can be potentially employed to increase the sensitivity of SPCE applications.
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Affiliation(s)
- Mustafa H Chowdhury
- Center for Fluorescence Spectroscopy, Medical Biotechnology Center, University of Maryland School of Medicine, 725 West Lombard Street, Baltimore, MD 21201, USA
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Fouqué B, Brachet AG, Gétin S, Pégon P, Obeïd P, Delapierre G, Chatelain F. Improvement of yeast biochip sensitivity using multilayer inorganic sol–gel substrates. Biosens Bioelectron 2007; 22:2151-7. [PMID: 17085034 DOI: 10.1016/j.bios.2006.09.036] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2006] [Revised: 09/07/2006] [Accepted: 09/29/2006] [Indexed: 11/30/2022]
Abstract
Today, microarray fluorescence detection is still limited because a great proportion of hybrids remain undetectable. In this paper we describe sol-gel optical multilayers (stacks of low- and high-index layers) deposited on glass slides which increase the fluorescence of DNA microarrays and favour the detection of fluorescent targets. An alternative to the expensive and time-consuming physical vapour deposition technology is proposed. It is a low-cost sol-gel coating of glass slides, each layer being made by "dipping" (alternatively in SiO2 or TiO2 solutions), "draining and drying". After the selection of the best surface layer of the substrates, the multilayer mirrors modelled for one (Cy3) or two (Cy3 and Cy5) fluorophores are spotted with a series of Yeast probes and compared to similar microarrays on standard glass slides through hybridisation experiments. The fluorescence images of the mirrors show increased signals for all the probes. The enhancement factors determined for Cy3 and for Cy3/Cy5 mirrors (10-12 and 4-5, respectively) are consistent with the initial modelling. This allows the assessment of the basal expression levels of Yeast low-expressed genes. Moreover, these substrates show a noticeable increase in sensitivity for induction/repression ratio measurements in differential gene expression experiments. So, they could be considered as promising tools for the analysis of small biological samples.
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Affiliation(s)
- B Fouqué
- CEA, DSV/DRDC/Biopuces, Grenoble F-38054, France.
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27
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Sabanayagam CR, Lakowicz JR. Increasing the sensitivity of DNA microarrays by metal-enhanced fluorescence using surface-bound silver nanoparticles. Nucleic Acids Res 2006; 35:e13. [PMID: 17169999 PMCID: PMC1802600 DOI: 10.1093/nar/gkl1054] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2006] [Revised: 10/03/2006] [Accepted: 11/19/2006] [Indexed: 11/15/2022] Open
Abstract
The effects of metal-enhanced fluorescence (MEF) have been measured for two dyes commonly used in DNA microarrays, Cy3 and Cy5. Silver island films (SIFs) grown on glass microscope slides were used as substrates for MEF DNA arrays. We examined MEF by spotting biotinylated, singly-labeled 23 bp DNAs onto avidin-coated SIF substrates. The fluorescence enhancement was found to be dependent on the DNA spotting concentration: below approximately 12.5 muM, MEF increased linearly, and at higher concentrations MEF remained at a constant maximum of 28-fold for Cy5 and 4-fold for Cy3, compared to avidin-coated glass substrates. Hybridization of singly-labeled oligonucleotides to arrayed single-stranded probes showed lower maximal MEF factors of 10-fold for Cy5 and 2.5-fold for Cy3, because of the smaller amount of immobilized fluorophores as a result of reduced surface hybridization efficiencies. We discuss how MEF can be used to increase the sensitivity of DNA arrays, especially for far red emitting fluorophores like Cy5, without significantly altering current microarray protocols.
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Affiliation(s)
- Chandran R Sabanayagam
- Department of Biochemistry and Molecular Biology, Center for Fluorescence Spectroscopy, University of Maryland School of Medicine, 725 West Lombard Street, Baltimore, MD 21201, USA.
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28
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Fu Y, Lakowicz JR. Enhanced fluorescence of Cy5-labeled DNA tethered to silver island films: fluorescence images and time-resolved studies using single-molecule spectroscopy. Anal Chem 2006; 78:6238-45. [PMID: 16944907 PMCID: PMC6830066 DOI: 10.1021/ac060586t] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Methods that increase the total emission per fluorophore would provide increased sensitivity and a wider dynamic range for chemical analysis, medical diagnostics, and in vivo molecular imaging. The use of fluorophore-metal interactions has the potential to dramatically increase the detectability of single fluorophores for bioanalytical monitoring. The fabrication and single-molecule analysis of fluorophore-labeled DNA molecules tethered to silver island films are described in this article. The single-molecule spectroscopic method reveals some insightful information on the behaviors of single molecules, rather than an ensemble of molecules. Analysis of fluorescence images, intensity profiles, total emitted photons, and lifetime distributions reveals some of sample heterogeneities. Investigations of time-dependent emission characteristics of single molecules indicate that the total number of emitted photons on the silvered surface is more than 10 times greater than on free labeled DNA molecules on a glass substrate. In addition, time-correlated single-photon counting results reveal the reduced lifetimes of single molecules tethered to silver island films.
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Affiliation(s)
- Yi Fu
- Center for Fluorescence Spectroscopy, University of Maryland School of Medicine, 725 West Lombard Street, Baltimore, Maryland 21201
| | - Joseph R. Lakowicz
- Center for Fluorescence Spectroscopy, University of Maryland School of Medicine, 725 West Lombard Street, Baltimore, Maryland 21201
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Sapsford KE, Berti L, Medintz IL. Materialien für den resonanten Fluoreszenzenergietransfer (FRET): jenseits klassischer Donor-Acceptor-Kombinationen. Angew Chem Int Ed Engl 2006. [DOI: 10.1002/ange.200503873] [Citation(s) in RCA: 121] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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Sapsford KE, Berti L, Medintz IL. Materials for Fluorescence Resonance Energy Transfer Analysis: Beyond Traditional Donor–Acceptor Combinations. Angew Chem Int Ed Engl 2006; 45:4562-89. [PMID: 16819760 DOI: 10.1002/anie.200503873] [Citation(s) in RCA: 1037] [Impact Index Per Article: 54.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The use of Förster or fluorescence resonance energy transfer (FRET) as a spectroscopic technique has been in practice for over 50 years. A search of ISI Web of Science with just the acronym "FRET" returns more than 2300 citations from various areas such as structural elucidation of biological molecules and their interactions, in vitro assays, in vivo monitoring in cellular research, nucleic acid analysis, signal transduction, light harvesting and metallic nanomaterials. The advent of new classes of fluorophores including nanocrystals, nanoparticles, polymers, and genetically encoded proteins, in conjunction with ever more sophisticated equipment, has been vital in this development. This review gives a critical overview of the major classes of fluorophore materials that may act as donor, acceptor, or both in a FRET configuration. We focus in particular on the benefits and limitations of these materials and their combinations, as well as the available methods of bioconjugation.
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Affiliation(s)
- Kim E Sapsford
- Center for Bio/Molecular Science and Engineering, U.S. Naval Research Laboratory, Code 6910, 4555 Overlook Avenue SW, Washington, DC 20375, USA
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