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For: Blake RD, Delcourt SG. Electrostatic forces at helix-coil boundaries in DNA. Biopolymers 1990;29:393-405. [PMID: 2331505 DOI: 10.1002/bip.360290211] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Number Cited by Other Article(s)
1
Chang CL, Fridman AS, Wartell RM, Hu CK, Lando DY. Relationship between calorimetric profiles and differential melting curves for natural DNAs. Int J Biol Macromol 2017;102:591-598. [DOI: 10.1016/j.ijbiomac.2017.04.048] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2016] [Revised: 04/10/2017] [Accepted: 04/11/2017] [Indexed: 10/19/2022]
2
Chang CL, Fridman AS, Grigoryan IE, Galyuk EN, Murashko ON, Hu CK, Lando DY. Estimation of the diversity between DNA calorimetric profiles, differential melting curves and corresponding melting temperatures. Biopolymers 2016;105:832-9. [PMID: 27422497 DOI: 10.1002/bip.22918] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2016] [Revised: 06/28/2016] [Accepted: 07/13/2016] [Indexed: 11/08/2022]
3
Lando DY, Fridman AS, Chang CL, Grigoryan IE, Galyuk EN, Murashko ON, Chen CC, Hu CK. Determination of melting temperature and temperature melting range for DNA with multi-peak differential melting curves. Anal Biochem 2015;479:28-36. [PMID: 25640587 DOI: 10.1016/j.ab.2015.01.018] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2014] [Revised: 01/09/2015] [Accepted: 01/22/2015] [Indexed: 01/05/2023]
4
Gonzalez O, Petkevičiūtė D, Maddocks JH. A sequence-dependent rigid-base model of DNA. J Chem Phys 2013;138:055102. [DOI: 10.1063/1.4789411] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
5
Völker J, Gindikin V, Klump HH, Plum GE, Breslauer KJ. Energy landscapes of dynamic ensembles of rolling triplet repeat bulge loops: implications for DNA expansion associated with disease states. J Am Chem Soc 2012;134:6033-44. [PMID: 22397401 PMCID: PMC3318849 DOI: 10.1021/ja3010896] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2012] [Indexed: 11/30/2022]
6
Ross PD, Howard FB. The thermodynamic contribution of the 5-methyl group of thymine in the two- and three-stranded complexes formed by poly(dU) and poly(dT) with poly(dA). Biopolymers 2003;68:210-22. [PMID: 12548624 DOI: 10.1002/bip.10306] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
7
Völker J, Klump HH, Manning GS, Breslauer KJ. Counterion association with native and denatured nucleic acids: an experimental approach. J Mol Biol 2001;310:1011-25. [PMID: 11501992 DOI: 10.1006/jmbi.2001.4841] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
8
Völker J, Klump HH, Breslauer KJ. Communication between noncontacting macromolecules. Proc Natl Acad Sci U S A 2001;98:7694-9. [PMID: 11438725 PMCID: PMC35404 DOI: 10.1073/pnas.141221298] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
9
Paner TM, Riccelli PV, Owczarzy R, Benight AS. Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence. Biopolymers 1998. [DOI: 10.1002/(sici)1097-0282(199612)39:6<779::aid-bip5>3.0.co;2-s] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
10
Paner TM, Riccelli PV, Owczarzy R, Benight AS. Studies of DNA dumbbells. VI. Analysis of optical melting curves of dumbbells with a sixteen-base pair duplex stem and end-loops of variable size and sequence. Biopolymers 1996;39:779-93. [PMID: 8946800 DOI: 10.1002/(sici)1097-0282(199612)39:6%3c779::aid-bip5%3e3.0.co;2-s] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
11
Petruska J, Goodman MF. Enthalpy-entropy compensation in DNA melting thermodynamics. J Biol Chem 1995;270:746-50. [PMID: 7822305 DOI: 10.1074/jbc.270.2.746] [Citation(s) in RCA: 87] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
12
Korolev NI, Vlasov AP, Kuznetsov IA. Thermal denaturation of Na- and Li-DNA in salt-free solutions. Biopolymers 1994;34:1275-90. [PMID: 7948739 DOI: 10.1002/bip.360340915] [Citation(s) in RCA: 24] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]
13
Bowater RP, Aboul-ela F, Lilley DM. Large-scale opening of A + T rich regions within supercoiled DNA molecules is suppressed by salt. Nucleic Acids Res 1994;22:2042-50. [PMID: 8029010 PMCID: PMC308119 DOI: 10.1093/nar/22.11.2042] [Citation(s) in RCA: 28] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
14
Gladman DD, Antoni C, Mease P, Clegg DO, Nash P. Parallel-stranded DNA under topological stress: rearrangement of (dA)15.(dT)15 to a d(A.A.T)n triplex. Ann Rheum Dis 1992;64 Suppl 2:ii14-7. [PMID: 15708927 PMCID: PMC1766874 DOI: 10.1136/ard.2004.032482] [Citation(s) in RCA: 613] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
15
Klysik J, Rippe K, Jovin TM. Parallel-stranded DNA under topological stress: rearrangement of (dA)15.(dT)15 to a d(A.A.T)n triplex. Nucleic Acids Res 1991;19:7145-54. [PMID: 1766874 PMCID: PMC332546 DOI: 10.1093/nar/19.25.7145] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
16
Stacking energies in DNA. J Biol Chem 1991. [DOI: 10.1016/s0021-9258(18)98599-6] [Citation(s) in RCA: 136] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
17
Electrostatic effects in biological molecules. Curr Opin Struct Biol 1991. [DOI: 10.1016/0959-440x(91)90058-2] [Citation(s) in RCA: 54] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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